Wall clock time and date at job start Tue Mar 31 2020 05:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47130 * 2 1 4 4 C 1.53002 * 109.47223 * 120.00182 * 2 1 3 5 5 H 1.09001 * 109.48726 * 59.97057 * 4 2 1 6 6 C 1.53090 * 109.47965 * 180.02562 * 4 2 1 7 7 C 1.53185 * 109.15979 * 177.59125 * 6 4 2 8 8 H 1.08997 * 109.54179 * 62.97517 * 7 6 4 9 9 C 1.52995 * 109.54078 * 183.15521 * 7 6 4 10 10 C 1.50706 * 109.47023 * 185.00058 * 9 7 6 11 11 O 1.21281 * 119.99958 * 359.97438 * 10 9 7 12 12 N 1.34774 * 120.00041 * 179.97438 * 10 9 7 13 13 C 1.46498 * 120.00377 * 359.97438 * 12 10 9 14 14 C 1.46506 * 119.99676 * 180.02562 * 12 10 9 15 15 C 1.50698 * 109.47006 * 269.99477 * 14 12 10 16 16 H 1.08005 * 119.99819 * 0.02562 * 15 14 12 17 17 C 1.37875 * 120.00046 * 179.97438 * 15 14 12 18 18 N 1.31511 * 120.00192 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99979 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47261 * 60.00310 * 19 17 15 22 22 H 1.48500 * 109.47454 * 300.00304 * 19 17 15 23 23 C 1.53185 * 109.03667 * 303.02097 * 7 6 4 24 24 C 1.53095 * 109.16268 * 56.97708 * 23 7 6 25 25 O 1.42901 * 109.41649 * 302.39333 * 24 23 7 26 26 H 1.09009 * 109.46910 * 60.00392 * 1 2 3 27 27 H 1.09003 * 109.46854 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47437 * 299.99791 * 1 2 3 29 29 H 1.09004 * 109.47761 * 240.00248 * 2 1 3 30 30 H 1.09000 * 109.47485 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47363 * 300.00193 * 3 2 1 32 32 H 1.09012 * 109.46748 * 60.00151 * 3 2 1 33 33 H 1.08996 * 109.52292 * 57.68904 * 6 4 2 34 34 H 1.08998 * 109.57698 * 297.52548 * 6 4 2 35 35 H 1.08999 * 109.47686 * 64.99903 * 9 7 6 36 36 H 1.09000 * 109.47325 * 304.99875 * 9 7 6 37 37 H 1.09005 * 109.47203 * 270.00640 * 13 12 10 38 38 H 1.08999 * 109.46777 * 29.99653 * 13 12 10 39 39 H 1.08997 * 109.47570 * 149.99964 * 13 12 10 40 40 H 1.09001 * 109.47068 * 150.00142 * 14 12 10 41 41 H 1.08993 * 109.47068 * 29.99595 * 14 12 10 42 42 H 0.97001 * 119.99934 * 359.97438 * 18 17 15 43 43 H 1.08996 * 109.51720 * 176.88592 * 23 7 6 44 44 H 1.09001 * 109.52002 * 297.07425 * 23 7 6 45 45 H 1.08994 * 109.47829 * 182.40357 * 24 23 7 46 46 H 1.09004 * 109.47475 * 62.37944 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6764 -1.7489 1.2497 6 6 3.5709 -0.7208 1.2497 7 6 4.0735 -1.3911 2.5322 8 1 3.7525 -2.4326 2.5491 9 6 5.6013 -1.3254 2.5791 10 6 6.1005 -2.0911 3.7773 11 8 5.3118 -2.6354 4.5207 12 7 7.4233 -2.1711 4.0227 13 6 8.3760 -1.5142 3.1244 14 6 7.9085 -2.9160 5.1872 15 6 8.0005 -1.9904 6.3729 16 1 7.7247 -0.9513 6.2694 17 6 8.4357 -2.4703 7.5899 18 7 8.7711 -3.7357 7.7160 19 14 8.5491 -1.3232 9.0598 20 1 9.0410 -2.0781 10.2402 21 1 7.2060 -0.7624 9.3549 22 1 9.4908 -0.2168 8.7528 23 6 3.4914 -0.6540 3.7423 24 6 1.9635 -0.6569 3.6454 25 8 1.5643 -0.0473 2.4161 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8901 33 1 3.9349 0.3057 1.2086 34 1 3.9366 -1.2720 0.3834 35 1 5.9181 -0.2852 2.6549 36 1 6.0120 -1.7649 1.6701 37 1 8.6659 -2.2059 2.3334 38 1 7.9109 -0.6325 2.6834 39 1 9.2599 -1.2153 3.6878 40 1 8.8942 -3.3276 4.9703 41 1 7.2173 -3.7280 5.4129 42 1 8.7119 -4.3315 6.9528 43 1 3.7994 -1.1580 4.6584 44 1 3.8538 0.3740 3.7515 45 1 1.5452 -0.0969 4.4817 46 1 1.5994 -1.6839 3.6771 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330780822.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:08 Heat of formation + Delta-G solvation = -112.808621 kcal Electronic energy + Delta-G solvation = -23412.081656 eV Core-core repulsion = 20107.637130 eV Total energy + Delta-G solvation = -3304.444526 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.05986 -38.83302 -35.52074 -35.00812 -34.29241 -32.83335 -30.04460 -29.18679 -27.35896 -27.15173 -25.63122 -24.05567 -23.43894 -22.47094 -20.21837 -19.83113 -18.48929 -16.94134 -16.42624 -16.30509 -15.71505 -15.54411 -14.98930 -14.75431 -14.43871 -14.29747 -13.75609 -13.62834 -13.40741 -12.83767 -12.73714 -12.43115 -12.33634 -12.23508 -12.02945 -11.88035 -11.74126 -11.68627 -11.32194 -11.20859 -11.01005 -10.90461 -10.85487 -10.65039 -10.57883 -10.33386 -10.12272 -10.10453 -9.43589 -9.11838 -8.85325 -8.39758 -7.62466 -6.39567 -4.11637 3.36062 3.42419 3.46122 3.63495 3.78883 3.86757 4.50711 4.54569 4.67244 4.84819 4.87444 4.92262 5.05539 5.14516 5.30180 5.33465 5.39666 5.42206 5.47756 5.52172 5.58323 5.60454 5.65679 5.68149 5.76201 5.76845 5.82888 5.88697 5.94980 5.96581 6.00127 6.12146 6.15105 6.17802 6.28429 6.50060 6.53903 6.80269 7.11769 7.30016 7.39779 8.03066 8.29136 8.42337 8.76797 9.02453 9.58325 10.97694 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.027653 B = 0.003573 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.303364 B = 7834.934623 C = 8268.130594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 C -0.145 4.145 4 C 0.096 3.904 5 H 0.055 0.945 6 C -0.147 4.147 7 C -0.070 4.070 8 H 0.076 0.924 9 C -0.133 4.133 10 C 0.504 3.496 11 O -0.540 6.540 12 N -0.601 5.601 13 C 0.084 3.916 14 C 0.235 3.765 15 C -0.606 4.606 16 H 0.050 0.950 17 C 0.019 3.981 18 N -0.910 5.910 19 Si 1.071 2.929 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.288 1.288 23 C -0.155 4.155 24 C 0.065 3.935 25 O -0.378 6.378 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.043 0.957 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.020 0.980 41 H 0.033 0.967 42 H 0.267 0.733 43 H 0.098 0.902 44 H 0.062 0.938 45 H 0.091 0.909 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.023 8.173 -17.126 21.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 C -0.203 4.203 4 C 0.039 3.961 5 H 0.072 0.928 6 C -0.184 4.184 7 C -0.089 4.089 8 H 0.095 0.905 9 C -0.173 4.173 10 C 0.291 3.709 11 O -0.419 6.419 12 N -0.333 5.333 13 C -0.060 4.060 14 C 0.115 3.885 15 C -0.645 4.645 16 H 0.069 0.931 17 C -0.185 4.185 18 N -0.546 5.546 19 Si 0.899 3.101 20 H -0.206 1.206 21 H -0.214 1.214 22 H -0.215 1.215 23 C -0.193 4.193 24 C -0.012 4.012 25 O -0.298 6.298 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.038 0.962 41 H 0.051 0.949 42 H 0.078 0.922 43 H 0.116 0.884 44 H 0.081 0.919 45 H 0.109 0.891 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.114 8.102 -15.121 20.441 hybrid contribution 0.042 -0.255 -1.659 1.679 sum -11.072 7.847 -16.781 21.581 Atomic orbital electron populations 1.21769 0.94808 1.01581 1.01979 1.21147 0.96402 0.97061 0.95948 1.21824 1.00975 0.95603 1.01856 1.22059 0.92775 0.95329 0.85985 0.92753 1.22358 0.96135 1.01979 0.97969 1.20908 0.93371 1.00327 0.94324 0.90540 1.21738 0.96561 1.01337 0.97697 1.20390 0.82500 0.81528 0.86478 1.90618 1.54409 1.47332 1.49501 1.47990 1.05259 1.52398 1.27646 1.21628 0.94344 0.96416 0.93582 1.19321 0.93923 0.92537 0.82694 1.22243 1.48864 0.97174 0.96170 0.93118 1.25818 0.93527 0.98531 1.00617 1.70804 1.45129 1.04324 1.34312 0.83512 0.76518 0.74545 0.75514 1.20640 1.21377 1.21456 1.22353 0.95498 1.00917 1.00495 1.22560 0.94644 0.97809 0.86185 1.87863 1.74669 1.53787 1.13443 0.93015 0.93055 0.91742 0.90426 0.92533 0.93189 0.91755 0.90671 0.91251 0.89532 0.89748 0.93816 0.92264 0.90877 0.96239 0.94901 0.92247 0.88384 0.91880 0.89095 0.93372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.05 37.16 0.34 -0.91 16 2 C -0.09 -0.79 2.81 -90.62 -0.25 -1.04 16 3 C -0.15 -1.29 8.70 37.16 0.32 -0.97 16 4 C 0.10 1.05 2.38 -26.68 -0.06 0.99 16 5 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 6 C -0.15 -1.60 4.41 -26.59 -0.12 -1.71 16 7 C -0.07 -0.97 1.92 -90.43 -0.17 -1.15 16 8 H 0.08 1.17 7.95 -51.93 -0.41 0.75 16 9 C -0.13 -1.93 3.73 -27.88 -0.10 -2.04 16 10 C 0.50 10.34 7.41 -10.98 -0.08 10.25 16 11 O -0.54 -13.21 13.58 5.56 0.08 -13.13 16 12 N -0.60 -12.85 2.86 -182.95 -0.52 -13.37 16 13 C 0.08 1.35 10.24 59.85 0.61 1.96 16 14 C 0.24 6.18 4.47 -5.19 -0.02 6.16 16 15 C -0.61 -17.49 9.39 -34.44 -0.32 -17.81 16 16 H 0.05 1.48 7.81 -52.48 -0.41 1.07 16 17 C 0.02 0.56 5.46 -17.82 -0.10 0.46 16 18 N -0.91 -27.96 13.65 55.43 0.76 -27.20 16 19 Si 1.07 25.73 29.90 -169.99 -5.08 20.64 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 23 C -0.16 -2.32 5.13 -26.59 -0.14 -2.45 16 24 C 0.06 0.84 6.84 37.21 0.25 1.10 16 25 O -0.38 -4.81 9.06 -35.23 -0.32 -5.13 16 26 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.63 7.68 -51.93 -0.40 0.23 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.49 6.38 -51.93 -0.33 0.16 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.66 7.68 -51.92 -0.40 0.26 16 33 H 0.07 0.81 6.31 -51.93 -0.33 0.48 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.09 1.15 7.40 -51.93 -0.38 0.77 16 36 H 0.08 1.03 8.11 -51.93 -0.42 0.61 16 37 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.77 6.44 -51.93 -0.33 0.44 16 39 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 40 H 0.02 0.51 7.94 -51.93 -0.41 0.10 16 41 H 0.03 0.96 7.29 -51.93 -0.38 0.58 16 42 H 0.27 8.16 7.22 -40.82 -0.29 7.86 16 43 H 0.10 1.81 6.07 -51.93 -0.32 1.49 16 44 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 356.09 15.07 5.37 5.37 Total: -1.00 -33.21 356.09 -7.84 -41.05 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -8.26 Total: -1.07 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: 0.15 Total: -7.16 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: 0.23 Total: -40.57 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.24 Total: -18.26 kcal Atomic # 14 Polarization: 25.73 SS G_CDS: -5.08 Total: 20.64 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.21 -7.84 -41.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330780822.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.762 kcal (2) G-P(sol) polarization free energy of solvation -33.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds