Wall clock time and date at job start Tue Mar 31 2020 05:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.46942 * 2 1 4 4 C 1.53002 * 109.47154 * 120.00530 * 2 1 3 5 5 H 1.08994 * 109.47719 * 299.97625 * 4 2 1 6 6 C 1.53281 * 109.45237 * 179.97438 * 4 2 1 7 7 C 1.53179 * 109.05955 * 182.44586 * 6 4 2 8 8 H 1.09005 * 109.54126 * 176.85091 * 7 6 4 9 9 C 1.52997 * 109.54595 * 297.02910 * 7 6 4 10 10 C 1.50701 * 109.47212 * 184.82207 * 9 7 6 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 7 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 7 13 13 C 1.46490 * 120.00111 * 0.02562 * 12 10 9 14 14 C 1.46497 * 119.99566 * 180.02562 * 12 10 9 15 15 C 1.50707 * 109.47162 * 90.00410 * 14 12 10 16 16 H 1.07998 * 119.99576 * 359.97438 * 15 14 12 17 17 C 1.37873 * 120.00057 * 179.97438 * 15 14 12 18 18 N 1.31510 * 120.00061 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 120.00225 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.46861 * 89.99972 * 19 17 15 21 21 H 1.48498 * 109.47453 * 210.00313 * 19 17 15 22 22 H 1.48505 * 109.46941 * 330.00240 * 19 17 15 23 23 C 1.53183 * 109.11115 * 56.94352 * 7 6 4 24 24 C 1.53092 * 109.15811 * 302.97376 * 23 7 6 25 25 O 1.42898 * 109.48253 * 59.99857 * 4 2 1 26 26 H 1.09004 * 109.46894 * 299.99482 * 1 2 3 27 27 H 1.08995 * 109.47572 * 59.99926 * 1 2 3 28 28 H 1.09002 * 109.47257 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46405 * 240.00485 * 2 1 3 30 30 H 1.09000 * 109.47475 * 300.00571 * 3 2 1 31 31 H 1.09004 * 109.46903 * 60.00523 * 3 2 1 32 32 H 1.08997 * 109.46886 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.64316 * 62.52880 * 6 4 2 34 34 H 1.09000 * 109.50371 * 302.27706 * 6 4 2 35 35 H 1.09002 * 109.47153 * 64.82208 * 9 7 6 36 36 H 1.09001 * 109.46832 * 304.82399 * 9 7 6 37 37 H 1.08995 * 109.47620 * 89.99771 * 13 12 10 38 38 H 1.09006 * 109.47028 * 209.99878 * 13 12 10 39 39 H 1.09002 * 109.47109 * 329.99455 * 13 12 10 40 40 H 1.09000 * 109.47018 * 209.99971 * 14 12 10 41 41 H 1.09000 * 109.47828 * 330.00266 * 14 12 10 42 42 H 0.96997 * 120.00410 * 179.97438 * 18 17 15 43 43 H 1.08995 * 109.52049 * 62.87614 * 23 7 6 44 44 H 1.09001 * 109.52530 * 183.00703 * 23 7 6 45 45 H 1.09006 * 109.47665 * 177.59231 * 24 23 7 46 46 H 1.09001 * 109.48330 * 297.62323 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7214 1.2492 5 1 1.6771 -0.2075 2.1392 6 6 3.5729 -0.7217 1.2484 7 6 4.0735 -1.4985 2.4700 8 1 5.1620 -1.5515 2.4474 9 6 3.6222 -0.7888 3.7481 10 6 4.2139 -1.4864 4.9458 11 8 4.9268 -2.4554 4.7921 12 7 3.9516 -1.0327 6.1875 13 6 3.0909 0.1381 6.3730 14 6 4.5272 -1.7105 7.3517 15 6 5.8628 -1.0952 7.6817 16 1 6.2447 -0.2810 7.0837 17 6 6.5970 -1.5717 8.7469 18 7 7.7622 -1.0344 9.0352 19 14 5.9361 -2.9795 9.7817 20 1 6.3929 -4.2714 9.2093 21 1 6.4382 -2.8494 11.1731 22 1 4.4517 -2.9369 9.7851 23 6 3.4908 -2.9147 2.4372 24 6 1.9630 -2.8284 2.3919 25 8 1.5638 -2.0687 1.2493 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8932 -0.5138 -0.8901 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9562 0.8901 32 1 3.1299 1.4424 -0.0005 33 1 3.9395 0.3038 1.2935 34 1 3.9362 -1.1998 0.3388 35 1 2.5344 -0.8147 3.8133 36 1 3.9604 0.2472 3.7272 37 1 2.0542 -0.1845 6.4691 38 1 3.3909 0.6703 7.2757 39 1 3.1872 0.7999 5.5122 40 1 3.8565 -1.6016 8.2040 41 1 4.6604 -2.7688 7.1271 42 1 8.2787 -1.3694 9.7848 43 1 3.8525 -3.4369 1.5515 44 1 3.7996 -3.4566 3.3311 45 1 1.5440 -3.8326 2.3253 46 1 1.5993 -2.3421 3.2971 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330780823.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:12 Heat of formation + Delta-G solvation = -102.008254 kcal Electronic energy + Delta-G solvation = -23720.018007 eV Core-core repulsion = 20416.041820 eV Total energy + Delta-G solvation = -3303.976187 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.33196 -38.72940 -35.62173 -35.03807 -34.24137 -32.54569 -30.11353 -29.42083 -27.76420 -27.15631 -25.81345 -24.46955 -23.57950 -22.30544 -20.40973 -19.42473 -18.06330 -16.98110 -16.64776 -16.42606 -16.03127 -15.34563 -15.28121 -14.56303 -14.38265 -14.19648 -13.88100 -13.60998 -13.35999 -13.15174 -12.82963 -12.48427 -12.40197 -12.35389 -12.22725 -11.97674 -11.64388 -11.56547 -11.39318 -11.23189 -11.14676 -11.04200 -10.91420 -10.87833 -10.52742 -10.38896 -10.14716 -10.04043 -9.54913 -9.27201 -8.90983 -8.60257 -7.70059 -6.09980 -4.08820 3.28038 3.33865 3.34339 3.35723 3.70479 3.85013 4.38344 4.50588 4.69454 4.83171 4.89062 4.96042 5.00043 5.15053 5.18985 5.22339 5.29197 5.34932 5.40825 5.46315 5.52155 5.61128 5.62637 5.67381 5.68374 5.75943 5.76928 5.82983 5.92273 5.94800 6.08390 6.10921 6.13824 6.19659 6.31071 6.37999 6.47551 6.69305 6.93483 7.26084 7.33349 7.59931 8.24829 8.45959 8.91807 8.99160 9.50360 11.03476 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.030375 B = 0.003785 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.585550 B = 7396.640680 C = 7600.494138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 C -0.149 4.149 4 C 0.094 3.906 5 H 0.058 0.942 6 C -0.146 4.146 7 C -0.073 4.073 8 H 0.084 0.916 9 C -0.140 4.140 10 C 0.506 3.494 11 O -0.538 6.538 12 N -0.600 5.600 13 C 0.083 3.917 14 C 0.215 3.785 15 C -0.529 4.529 16 H 0.073 0.927 17 C 0.072 3.928 18 N -0.898 5.898 19 Si 0.877 3.123 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.266 1.266 23 C -0.155 4.155 24 C 0.061 3.939 25 O -0.380 6.380 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.044 0.956 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.029 0.971 41 H 0.036 0.964 42 H 0.265 0.735 43 H 0.066 0.934 44 H 0.096 0.904 45 H 0.090 0.910 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.128 3.415 -16.058 22.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 C -0.206 4.206 4 C 0.036 3.964 5 H 0.076 0.924 6 C -0.183 4.183 7 C -0.092 4.092 8 H 0.102 0.898 9 C -0.180 4.180 10 C 0.293 3.707 11 O -0.416 6.416 12 N -0.331 5.331 13 C -0.061 4.061 14 C 0.094 3.906 15 C -0.567 4.567 16 H 0.092 0.908 17 C -0.131 4.131 18 N -0.536 5.536 19 Si 0.704 3.296 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.191 1.191 23 C -0.193 4.193 24 C -0.016 4.016 25 O -0.300 6.300 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.062 0.938 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.046 0.954 41 H 0.054 0.946 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.114 0.886 45 H 0.108 0.892 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -14.713 2.820 -16.125 22.010 hybrid contribution 0.055 -0.439 1.001 1.094 sum -14.659 2.381 -15.124 21.196 Atomic orbital electron populations 1.21767 0.94786 1.02330 1.01206 1.21099 0.96380 0.95636 0.97584 1.21881 1.01495 0.95198 1.02041 1.22181 0.93023 0.83406 0.97785 0.92445 1.22351 0.96035 1.01128 0.98807 1.20914 1.01528 0.94513 0.92196 0.89803 1.21873 1.01577 1.00759 0.93806 1.20364 0.81356 0.84824 0.84107 1.90624 1.37786 1.27777 1.85407 1.47866 1.48448 1.29835 1.07001 1.21654 0.93261 0.88423 1.02738 1.19650 0.94330 0.93906 0.82667 1.21331 1.01797 1.19427 1.14158 0.90841 1.24866 0.94617 0.96503 0.97078 1.69895 1.12450 1.42069 1.29222 0.86838 0.79674 0.83333 0.79755 1.19898 1.21059 1.19098 1.22307 0.95276 0.97458 1.04234 1.22620 0.94927 0.95840 0.88198 1.87863 1.74657 1.23255 1.44185 0.92952 0.93012 0.91877 0.90637 0.92315 0.92451 0.92055 0.90688 0.90974 0.89730 0.89307 0.93761 0.90589 0.92178 0.95355 0.94583 0.92557 0.91533 0.88555 0.89198 0.93407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.05 37.16 0.34 -0.88 16 2 C -0.09 -0.79 2.72 -90.62 -0.25 -1.03 16 3 C -0.15 -1.11 8.84 37.15 0.33 -0.78 16 4 C 0.09 0.99 1.95 -26.58 -0.05 0.93 16 5 H 0.06 0.60 6.72 -51.93 -0.35 0.25 16 6 C -0.15 -1.58 4.50 -26.49 -0.12 -1.70 16 7 C -0.07 -0.99 2.33 -90.43 -0.21 -1.20 16 8 H 0.08 1.31 7.96 -51.93 -0.41 0.89 16 9 C -0.14 -1.98 3.16 -27.88 -0.09 -2.07 16 10 C 0.51 10.00 7.37 -10.98 -0.08 9.92 16 11 O -0.54 -12.71 13.58 5.56 0.08 -12.63 16 12 N -0.60 -12.22 2.86 -182.96 -0.52 -12.74 16 13 C 0.08 1.26 10.24 59.84 0.61 1.87 16 14 C 0.22 5.26 4.23 -5.19 -0.02 5.24 16 15 C -0.53 -15.25 9.94 -34.44 -0.34 -15.59 16 16 H 0.07 2.33 8.06 -52.49 -0.42 1.90 16 17 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 18 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 19 Si 0.88 21.62 27.47 -169.99 -4.67 16.96 16 20 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 23 C -0.16 -2.15 5.40 -26.59 -0.14 -2.30 16 24 C 0.06 0.74 6.57 37.20 0.24 0.99 16 25 O -0.38 -4.68 9.73 -35.23 -0.34 -5.02 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.60 7.68 -51.93 -0.40 0.20 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.45 6.49 -51.93 -0.34 0.11 16 33 H 0.07 0.72 6.58 -51.93 -0.34 0.38 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 1.04 4.99 -51.93 -0.26 0.78 16 36 H 0.09 1.14 7.40 -51.93 -0.38 0.75 16 37 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 39 H 0.06 0.75 6.44 -51.93 -0.33 0.42 16 40 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 41 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16 42 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.10 1.60 5.94 -51.93 -0.31 1.29 16 45 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.05 0.58 6.49 -51.93 -0.34 0.25 16 LS Contribution 348.51 15.07 5.25 5.25 Total: -1.00 -33.23 348.51 -7.32 -40.55 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -8.00 Total: -0.76 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: 0.12 Total: -4.59 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: 0.25 Total: -39.75 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.27 Total: -17.65 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.23 -7.32 -40.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330780823.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.462 kcal (2) G-P(sol) polarization free energy of solvation -33.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds