Wall clock time and date at job start Tue Mar 31 2020 05:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47473 * 2 1 4 4 C 1.53006 * 109.47141 * 119.99931 * 2 1 3 5 5 H 1.08995 * 109.49125 * 185.34307 * 4 2 1 6 6 O 1.42907 * 109.47610 * 305.37392 * 4 2 1 7 7 C 1.42900 * 114.09242 * 181.13970 * 6 4 2 8 8 C 1.53095 * 109.41861 * 298.83906 * 7 6 4 9 9 C 1.53184 * 109.15967 * 57.61221 * 8 7 6 10 10 C 1.53090 * 109.47898 * 65.31378 * 4 2 1 11 11 H 1.08997 * 109.57881 * 302.34574 * 10 4 2 12 12 C 1.53002 * 109.52167 * 62.50747 * 10 4 2 13 13 N 1.46504 * 109.47065 * 183.87735 * 12 10 4 14 14 C 1.34776 * 120.00248 * 179.97438 * 13 12 10 15 15 O 1.21287 * 119.99566 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00274 * 179.97438 * 14 13 12 17 17 C 1.52993 * 109.47235 * 180.02562 * 16 14 13 18 18 C 1.50697 * 109.47235 * 180.02562 * 17 16 14 19 19 H 1.08000 * 120.00190 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99945 * 179.72623 * 18 17 16 21 21 N 1.31516 * 119.99553 * 180.02562 * 20 18 17 22 22 Si 1.86792 * 120.00261 * 359.97438 * 20 18 17 23 23 H 1.48507 * 109.47078 * 90.00006 * 22 20 18 24 24 H 1.48496 * 109.47755 * 210.00296 * 22 20 18 25 25 H 1.48507 * 109.47054 * 330.00805 * 22 20 18 26 26 H 1.09005 * 109.47074 * 60.00624 * 1 2 3 27 27 H 1.08999 * 109.47234 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47375 * 300.00426 * 1 2 3 29 29 H 1.09004 * 109.47602 * 239.99721 * 2 1 3 30 30 H 1.08996 * 109.47554 * 175.85230 * 3 2 1 31 31 H 1.09009 * 109.47014 * 295.85256 * 3 2 1 32 32 H 1.09000 * 109.47095 * 55.84606 * 3 2 1 33 33 H 1.08999 * 109.48052 * 178.85612 * 7 6 4 34 34 H 1.09004 * 109.48251 * 58.82554 * 7 6 4 35 35 H 1.08997 * 109.52030 * 297.70858 * 8 7 6 36 36 H 1.08997 * 109.57624 * 177.54331 * 8 7 6 37 37 H 1.08996 * 109.54012 * 183.15720 * 9 8 7 38 38 H 1.08993 * 109.61704 * 62.93214 * 9 8 7 39 39 H 1.08993 * 109.47415 * 63.87362 * 12 10 4 40 40 H 1.09003 * 109.46656 * 303.87046 * 12 10 4 41 41 H 0.97001 * 119.99534 * 359.97438 * 13 12 10 42 42 H 1.08999 * 109.47082 * 59.99369 * 16 14 13 43 43 H 1.09007 * 109.46909 * 299.99987 * 16 14 13 44 44 H 1.09007 * 109.47447 * 59.99880 * 17 16 14 45 45 H 1.08998 * 109.47126 * 300.00076 * 17 16 14 46 46 H 0.97008 * 119.99663 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 3.1257 -0.6393 1.2988 6 8 1.4635 -0.1245 2.4128 7 6 1.8953 -0.7091 3.6431 8 6 1.4914 -2.1854 3.6746 9 6 2.1031 -2.8999 2.4655 10 6 1.6418 -2.1981 1.1845 11 1 0.5588 -2.2807 1.0936 12 6 2.3081 -2.8545 -0.0264 13 7 1.8539 -4.2427 -0.1408 14 6 2.3115 -5.0212 -1.1412 15 8 3.0991 -4.5725 -1.9470 16 6 1.8448 -6.4493 -1.2586 17 6 2.5109 -7.1057 -2.4694 18 6 2.0436 -8.5336 -2.5871 19 1 1.3420 -8.9331 -1.8698 20 6 2.5078 -9.3284 -3.6136 21 7 2.0996 -10.5744 -3.7166 22 14 3.7153 -8.6353 -4.8588 23 1 5.1034 -8.8669 -4.3843 24 1 3.5202 -9.3108 -6.1668 25 1 3.4826 -7.1769 -5.0152 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 3.1275 1.4433 0.0743 31 1 1.7386 1.9344 -0.9249 32 1 1.6172 1.9773 0.8504 33 1 1.4278 -0.1865 4.4777 34 1 2.9792 -0.6270 3.7239 35 1 0.4052 -2.2668 3.6346 36 1 1.8576 -2.6448 4.5927 37 1 1.7738 -3.9388 2.4509 38 1 3.1905 -2.8629 2.5302 39 1 3.3905 -2.8356 0.0998 40 1 2.0380 -2.3083 -0.9302 41 1 1.2237 -4.6014 0.5035 42 1 0.7622 -6.4685 -1.3840 43 1 2.1155 -6.9954 -0.3549 44 1 3.5934 -7.0865 -2.3434 45 1 2.2405 -6.5597 -3.3732 46 1 2.4259 -11.1335 -4.4390 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330887521.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:23 Heat of formation + Delta-G solvation = -119.692581 kcal Electronic energy + Delta-G solvation = -22960.086027 eV Core-core repulsion = 19655.342990 eV Total energy + Delta-G solvation = -3304.743037 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.44145 -39.05827 -35.84480 -35.33675 -33.46885 -33.11649 -31.38312 -30.64016 -27.38128 -27.01440 -25.74197 -25.02227 -22.58115 -21.16098 -20.88384 -20.09073 -19.54323 -17.26582 -16.80404 -16.24227 -15.82902 -15.58381 -15.55957 -14.96972 -14.66301 -14.33718 -14.07903 -14.06017 -13.62080 -13.30943 -13.08180 -12.80218 -12.63119 -12.54039 -12.30487 -12.12632 -11.80630 -11.68488 -11.40873 -11.35417 -11.15138 -10.96243 -10.90701 -10.61459 -10.43022 -10.15888 -10.03831 -9.78793 -9.72085 -9.22397 -9.15069 -8.84768 -8.50207 -6.02671 -4.01314 3.13782 3.36745 3.38358 3.44858 3.53409 3.56020 4.25935 4.37809 4.46657 4.51460 4.59966 4.75478 4.79269 4.86692 4.96967 5.08701 5.13279 5.31835 5.32881 5.34250 5.38481 5.43837 5.51005 5.53628 5.58976 5.67127 5.69492 5.75434 5.78892 5.86330 5.91042 5.99272 6.08832 6.10259 6.12850 6.22051 6.62142 6.70561 6.93708 7.37296 7.44409 7.76185 7.81101 8.50661 8.66783 9.00479 9.60491 11.10190 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.027393 B = 0.003154 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.928200 B = 8876.109822 C = 9459.983983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.144 4.144 4 C 0.106 3.894 5 H 0.060 0.940 6 O -0.371 6.371 7 C 0.060 3.940 8 C -0.155 4.155 9 C -0.119 4.119 10 C -0.131 4.131 11 H 0.090 0.910 12 C 0.124 3.876 13 N -0.740 5.740 14 C 0.509 3.491 15 O -0.541 6.541 16 C -0.122 4.122 17 C 0.002 3.998 18 C -0.525 4.525 19 H 0.072 0.928 20 C 0.068 3.932 21 N -0.904 5.904 22 Si 0.878 3.122 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.261 1.261 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.048 0.952 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.398 0.602 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.019 0.981 45 H 0.023 0.977 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.389 23.168 15.615 28.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 C -0.201 4.201 4 C 0.047 3.953 5 H 0.078 0.922 6 O -0.290 6.290 7 C -0.017 4.017 8 C -0.193 4.193 9 C -0.157 4.157 10 C -0.150 4.150 11 H 0.108 0.892 12 C 0.000 4.000 13 N -0.395 5.395 14 C 0.298 3.702 15 O -0.417 6.417 16 C -0.162 4.162 17 C -0.036 4.036 18 C -0.563 4.563 19 H 0.090 0.910 20 C -0.133 4.133 21 N -0.543 5.543 22 Si 0.705 3.295 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.185 1.185 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.105 0.895 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.232 0.768 42 H 0.104 0.896 43 H 0.103 0.897 44 H 0.037 0.963 45 H 0.042 0.958 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.918 23.493 14.893 27.882 hybrid contribution 0.520 -0.285 -0.231 0.636 sum -1.398 23.208 14.662 27.487 Atomic orbital electron populations 1.21775 0.94419 1.01936 1.01946 1.21282 0.97153 0.96724 0.96059 1.21785 1.00711 0.95665 1.01967 1.22028 0.96657 0.90487 0.86100 0.92212 1.87932 1.69496 1.58273 1.13313 1.22559 0.98930 0.93236 0.86962 1.22190 1.01926 0.96379 0.98815 1.21675 1.00884 0.99692 0.93426 1.22097 1.02129 0.95781 0.94981 0.89227 1.21299 0.98861 0.82631 0.97213 1.46159 1.49138 1.12308 1.31857 1.21532 0.80221 0.88993 0.79478 1.90653 1.34317 1.75383 1.41386 1.21664 1.02153 0.89372 1.03037 1.19364 0.96001 0.95764 0.92505 1.21120 1.27646 0.94406 1.13099 0.90958 1.24977 0.96143 0.94636 0.97521 1.69917 1.44732 1.06883 1.32762 0.86790 0.81759 0.80222 0.80753 1.20249 1.21440 1.18519 0.92896 0.92621 0.91813 0.89529 0.92916 0.92686 0.92029 0.89006 0.93344 0.90972 0.90837 0.91041 0.91551 0.91843 0.91272 0.76825 0.89634 0.89697 0.96301 0.95832 0.92726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.76 37.16 0.33 -0.91 16 2 C -0.09 -0.81 2.59 -90.62 -0.23 -1.05 16 3 C -0.14 -1.15 9.05 37.15 0.34 -0.82 16 4 C 0.11 0.92 1.82 -26.68 -0.05 0.87 16 5 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 6 O -0.37 -3.36 9.14 -35.23 -0.32 -3.68 16 7 C 0.06 0.42 6.84 37.21 0.25 0.68 16 8 C -0.16 -1.06 6.14 -26.59 -0.16 -1.22 16 9 C -0.12 -0.95 5.14 -26.54 -0.14 -1.09 16 10 C -0.13 -1.15 1.75 -90.48 -0.16 -1.31 16 11 H 0.09 0.80 6.48 -51.93 -0.34 0.46 16 12 C 0.12 1.43 4.89 -4.04 -0.02 1.41 16 13 N -0.74 -9.67 5.31 -60.29 -0.32 -9.99 16 14 C 0.51 9.24 7.83 -10.99 -0.09 9.15 16 15 O -0.54 -12.04 15.98 5.55 0.09 -11.95 16 16 C -0.12 -2.37 5.64 -27.89 -0.16 -2.53 16 17 C 0.00 0.04 3.33 -27.89 -0.09 -0.05 16 18 C -0.52 -15.10 9.66 -34.44 -0.33 -15.43 16 19 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 20 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 21 N -0.90 -28.15 13.96 55.43 0.77 -27.38 16 22 Si 0.88 22.72 27.47 -169.99 -4.67 18.05 16 23 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H -0.26 -6.73 6.53 56.52 0.37 -6.36 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.49 6.53 -51.93 -0.34 0.15 16 28 H 0.06 0.57 7.55 -51.93 -0.39 0.18 16 29 H 0.09 0.79 6.17 -51.93 -0.32 0.47 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 32 H 0.06 0.51 7.94 -51.93 -0.41 0.10 16 33 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.56 7.22 -51.93 -0.38 0.19 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.07 0.86 6.21 -51.93 -0.32 0.53 16 41 H 0.40 4.12 7.62 -40.82 -0.31 3.80 16 42 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 43 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 44 H 0.02 0.49 7.54 -51.93 -0.39 0.10 16 45 H 0.02 0.62 7.14 -51.93 -0.37 0.25 16 46 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 355.90 15.07 5.36 5.36 Total: -1.00 -33.72 355.90 -7.93 -41.65 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -8.23 Total: -1.72 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: -0.61 Total: -10.34 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.45 Total: -37.37 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.23 Total: -15.64 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.67 Total: 18.05 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.72 -7.93 -41.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330887521.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.046 kcal (2) G-P(sol) polarization free energy of solvation -33.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds