Wall clock time and date at job start Tue Mar 31 2020 05:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47473 * 2 1 4 4 C 1.53006 * 109.47141 * 119.99931 * 2 1 3 5 5 H 1.08995 * 109.49125 * 185.34307 * 4 2 1 6 6 O 1.42907 * 109.47610 * 305.37392 * 4 2 1 7 7 C 1.42900 * 114.09242 * 181.13970 * 6 4 2 8 8 C 1.53095 * 109.41861 * 298.83906 * 7 6 4 9 9 C 1.53184 * 109.15967 * 57.61221 * 8 7 6 10 10 C 1.53090 * 109.47898 * 65.31378 * 4 2 1 11 11 H 1.08997 * 109.57881 * 302.34574 * 10 4 2 12 12 C 1.53002 * 109.52167 * 62.50747 * 10 4 2 13 13 N 1.46504 * 109.47065 * 183.87735 * 12 10 4 14 14 C 1.34776 * 120.00248 * 179.97438 * 13 12 10 15 15 O 1.21287 * 119.99566 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00274 * 179.97438 * 14 13 12 17 17 C 1.52993 * 109.47235 * 180.02562 * 16 14 13 18 18 C 1.50697 * 109.47235 * 180.02562 * 17 16 14 19 19 H 1.08000 * 120.00190 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99945 * 179.72623 * 18 17 16 21 21 N 1.31516 * 119.99553 * 180.02562 * 20 18 17 22 22 Si 1.86792 * 120.00261 * 359.97438 * 20 18 17 23 23 H 1.48507 * 109.47078 * 90.00006 * 22 20 18 24 24 H 1.48496 * 109.47755 * 210.00296 * 22 20 18 25 25 H 1.48507 * 109.47054 * 330.00805 * 22 20 18 26 26 H 1.09005 * 109.47074 * 60.00624 * 1 2 3 27 27 H 1.08999 * 109.47234 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47375 * 300.00426 * 1 2 3 29 29 H 1.09004 * 109.47602 * 239.99721 * 2 1 3 30 30 H 1.08996 * 109.47554 * 175.85230 * 3 2 1 31 31 H 1.09009 * 109.47014 * 295.85256 * 3 2 1 32 32 H 1.09000 * 109.47095 * 55.84606 * 3 2 1 33 33 H 1.08999 * 109.48052 * 178.85612 * 7 6 4 34 34 H 1.09004 * 109.48251 * 58.82554 * 7 6 4 35 35 H 1.08997 * 109.52030 * 297.70858 * 8 7 6 36 36 H 1.08997 * 109.57624 * 177.54331 * 8 7 6 37 37 H 1.08996 * 109.54012 * 183.15720 * 9 8 7 38 38 H 1.08993 * 109.61704 * 62.93214 * 9 8 7 39 39 H 1.08993 * 109.47415 * 63.87362 * 12 10 4 40 40 H 1.09003 * 109.46656 * 303.87046 * 12 10 4 41 41 H 0.97001 * 119.99534 * 359.97438 * 13 12 10 42 42 H 1.08999 * 109.47082 * 59.99369 * 16 14 13 43 43 H 1.09007 * 109.46909 * 299.99987 * 16 14 13 44 44 H 1.09007 * 109.47447 * 59.99880 * 17 16 14 45 45 H 1.08998 * 109.47126 * 300.00076 * 17 16 14 46 46 H 0.97008 * 119.99663 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 3.1257 -0.6393 1.2988 6 8 1.4635 -0.1245 2.4128 7 6 1.8953 -0.7091 3.6431 8 6 1.4914 -2.1854 3.6746 9 6 2.1031 -2.8999 2.4655 10 6 1.6418 -2.1981 1.1845 11 1 0.5588 -2.2807 1.0936 12 6 2.3081 -2.8545 -0.0264 13 7 1.8539 -4.2427 -0.1408 14 6 2.3115 -5.0212 -1.1412 15 8 3.0991 -4.5725 -1.9470 16 6 1.8448 -6.4493 -1.2586 17 6 2.5109 -7.1057 -2.4694 18 6 2.0436 -8.5336 -2.5871 19 1 1.3420 -8.9331 -1.8698 20 6 2.5078 -9.3284 -3.6136 21 7 2.0996 -10.5744 -3.7166 22 14 3.7153 -8.6353 -4.8588 23 1 5.1034 -8.8669 -4.3843 24 1 3.5202 -9.3108 -6.1668 25 1 3.4826 -7.1769 -5.0152 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 3.1275 1.4433 0.0743 31 1 1.7386 1.9344 -0.9249 32 1 1.6172 1.9773 0.8504 33 1 1.4278 -0.1865 4.4777 34 1 2.9792 -0.6270 3.7239 35 1 0.4052 -2.2668 3.6346 36 1 1.8576 -2.6448 4.5927 37 1 1.7738 -3.9388 2.4509 38 1 3.1905 -2.8629 2.5302 39 1 3.3905 -2.8356 0.0998 40 1 2.0380 -2.3083 -0.9302 41 1 1.2237 -4.6014 0.5035 42 1 0.7622 -6.4685 -1.3840 43 1 2.1155 -6.9954 -0.3549 44 1 3.5934 -7.0865 -2.3434 45 1 2.2405 -6.5597 -3.3732 46 1 2.4259 -11.1335 -4.4390 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330887521.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:22 Heat of formation + Delta-G solvation = -141.663744 kcal Electronic energy + Delta-G solvation = -22961.038768 eV Core-core repulsion = 19655.342990 eV Total energy + Delta-G solvation = -3305.695778 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.26517 -40.34378 -36.74485 -36.11141 -35.52815 -34.07423 -33.26701 -31.51939 -28.51296 -28.03963 -26.75705 -25.99598 -23.55557 -22.77124 -21.53104 -21.27349 -20.57165 -19.20749 -17.75010 -17.46994 -16.90889 -16.74759 -16.42609 -16.22482 -15.84387 -15.56097 -15.23845 -14.77812 -14.71084 -14.53695 -14.44802 -14.18751 -13.72554 -13.50737 -13.36436 -13.20626 -12.90284 -12.81928 -12.49388 -12.37273 -12.11707 -11.99229 -11.96903 -11.78836 -11.76038 -11.61194 -11.40052 -11.29153 -11.09063 -10.82178 -10.78317 -10.31387 -10.03687 -8.31778 -6.34608 1.33133 1.35162 1.50275 1.69498 2.23605 2.34971 2.84591 3.04000 3.56999 3.66767 3.75095 3.99427 4.03245 4.09708 4.15452 4.24747 4.29843 4.36531 4.41264 4.47783 4.52306 4.61282 4.64775 4.76037 4.85144 4.87609 4.93529 4.99752 5.02107 5.04067 5.08480 5.11382 5.15995 5.25638 5.32367 5.35685 5.44632 5.45165 5.50507 5.53704 5.61349 6.23327 6.31505 6.58487 6.71938 7.30728 7.31384 8.83932 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.027393 B = 0.003154 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.928200 B = 8876.109822 C = 9459.983983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.097 4.097 3 C -0.141 4.141 4 C 0.108 3.892 5 H 0.059 0.941 6 O -0.382 6.382 7 C 0.054 3.946 8 C -0.150 4.150 9 C -0.121 4.121 10 C -0.119 4.119 11 H 0.093 0.907 12 C 0.125 3.875 13 N -0.716 5.716 14 C 0.514 3.486 15 O -0.587 6.587 16 C -0.117 4.117 17 C 0.005 3.995 18 C -0.529 4.529 19 H 0.050 0.950 20 C 0.013 3.987 21 N -0.944 5.944 22 Si 0.939 3.061 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.262 1.262 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.106 0.894 34 H 0.052 0.948 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.063 0.937 41 H 0.414 0.586 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.008 0.992 45 H 0.009 0.991 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.381 24.548 16.727 29.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.115 4.115 3 C -0.198 4.198 4 C 0.050 3.950 5 H 0.076 0.924 6 O -0.301 6.301 7 C -0.023 4.023 8 C -0.188 4.188 9 C -0.158 4.158 10 C -0.138 4.138 11 H 0.111 0.889 12 C 0.001 3.999 13 N -0.370 5.370 14 C 0.302 3.698 15 O -0.467 6.467 16 C -0.157 4.157 17 C -0.033 4.033 18 C -0.567 4.567 19 H 0.069 0.931 20 C -0.185 4.185 21 N -0.585 5.585 22 Si 0.763 3.237 23 H -0.194 1.194 24 H -0.203 1.203 25 H -0.186 1.186 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.098 0.902 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.124 0.876 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.251 0.749 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.027 0.973 45 H 0.028 0.972 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.942 24.888 16.062 29.684 hybrid contribution 0.459 -0.704 -0.482 0.969 sum -1.483 24.184 15.580 28.806 Atomic orbital electron populations 1.21735 0.94283 1.01732 1.01943 1.21297 0.97259 0.97092 0.95855 1.21753 1.00773 0.95218 1.02081 1.21963 0.96558 0.90227 0.86270 0.92351 1.87926 1.69708 1.58623 1.13843 1.22737 0.99403 0.93559 0.86559 1.22154 1.01800 0.96052 0.98748 1.21702 1.00815 0.99904 0.93422 1.21989 1.01901 0.95765 0.94131 0.88924 1.21383 0.98705 0.81422 0.98341 1.45891 1.48122 1.12541 1.30411 1.21179 0.79857 0.88759 0.79989 1.90641 1.36573 1.76063 1.43428 1.21496 1.02628 0.90322 1.01248 1.19220 0.95690 0.93837 0.94576 1.21440 1.26769 0.96187 1.12300 0.93144 1.25811 0.98053 0.94946 0.99659 1.70027 1.46345 1.08187 1.33898 0.85825 0.79773 0.79340 0.78753 1.19351 1.20339 1.18595 0.92586 0.92886 0.92107 0.90192 0.92758 0.92234 0.92291 0.87604 0.92959 0.91006 0.89482 0.90722 0.91854 0.92572 0.91915 0.74873 0.87990 0.87924 0.97328 0.97226 0.92374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 8.76 71.98 0.63 -1.59 16 2 C -0.10 -1.57 2.59 -10.79 -0.03 -1.60 16 3 C -0.14 -2.10 9.05 71.98 0.65 -1.45 16 4 C 0.11 1.73 1.82 30.63 0.06 1.79 16 5 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 6 O -0.38 -6.21 9.14 -148.98 -1.36 -7.57 16 7 C 0.05 0.64 6.84 72.01 0.49 1.13 16 8 C -0.15 -1.66 6.14 30.69 0.19 -1.47 16 9 C -0.12 -1.65 5.14 30.72 0.16 -1.49 16 10 C -0.12 -1.87 1.75 -10.70 -0.02 -1.89 16 11 H 0.09 1.45 6.48 -2.39 -0.02 1.43 16 12 C 0.13 2.71 4.89 86.38 0.42 3.13 16 13 N -0.72 -17.34 5.31 -463.05 -2.46 -19.79 16 14 C 0.51 17.98 7.83 87.66 0.69 18.67 16 15 O -0.59 -25.83 15.98 -3.05 -0.05 -25.88 16 16 C -0.12 -4.39 5.64 29.84 0.17 -4.22 16 17 C 0.00 0.24 3.33 29.84 0.10 0.34 16 18 C -0.53 -30.60 9.66 25.60 0.25 -30.35 16 19 H 0.05 3.06 7.99 -2.91 -0.02 3.04 16 20 C 0.01 0.77 5.47 84.66 0.46 1.24 16 21 N -0.94 -59.28 13.96 21.45 0.30 -58.98 16 22 Si 0.94 46.96 27.47 68.60 1.88 48.84 16 23 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 24 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 25 H -0.26 -13.03 6.53 99.48 0.65 -12.38 16 26 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 27 H 0.05 0.85 6.53 -2.39 -0.02 0.84 16 28 H 0.06 1.00 7.55 -2.39 -0.02 0.98 16 29 H 0.08 1.41 6.17 -2.38 -0.01 1.39 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.06 0.91 7.94 -2.39 -0.02 0.89 16 33 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.07 0.97 7.22 -2.39 -0.02 0.96 16 38 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.06 1.49 6.21 -2.39 -0.01 1.48 16 41 H 0.41 7.45 7.62 -92.71 -0.71 6.74 16 42 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 43 H 0.10 3.47 8.14 -2.38 -0.02 3.45 16 44 H 0.01 0.43 7.54 -2.38 -0.02 0.41 16 45 H 0.01 0.49 7.14 -2.39 -0.02 0.48 16 46 H 0.27 15.68 8.31 -92.70 -0.77 14.91 16 Total: -1.00 -72.10 355.90 2.71 -69.39 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 0.18 Total: 11.76 kcal Atomic # 6 Polarization: -21.99 SS G_CDS: 4.22 Total: -17.77 kcal Atomic # 7 Polarization: -76.61 SS G_CDS: -2.16 Total: -78.77 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -1.41 Total: -33.45 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 1.88 Total: 48.84 kcal Total: -72.10 2.71 -69.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330887521.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.273 kcal (2) G-P(sol) polarization free energy of solvation -72.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds