Wall clock time and date at job start Tue Mar 31 2020 07:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47214 * 2 1 4 4 H 1.08999 * 109.47048 * 305.75267 * 3 2 1 5 5 C 1.52998 * 109.46957 * 65.75230 * 3 2 1 6 6 C 1.52995 * 109.47208 * 185.75618 * 3 2 1 7 7 H 1.08995 * 109.47342 * 184.91268 * 6 3 2 8 8 O 1.42902 * 109.46769 * 304.90989 * 6 3 2 9 9 C 1.42903 * 113.99854 * 254.99781 * 8 6 3 10 10 C 1.50706 * 109.47240 * 64.90654 * 6 3 2 11 11 O 1.21290 * 120.00096 * 249.10924 * 10 6 3 12 12 N 1.34774 * 119.99653 * 69.11171 * 10 6 3 13 13 C 1.37095 * 120.00221 * 6.21600 * 12 10 6 14 14 H 1.08000 * 120.00145 * 241.60047 * 13 12 10 15 15 C 1.38950 * 120.00297 * 61.59568 * 13 12 10 16 16 N 1.31409 * 120.00010 * 356.85041 * 15 13 12 17 17 Si 1.86802 * 120.00147 * 176.84463 * 15 13 12 18 18 H 1.48500 * 109.47185 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47153 * 120.00376 * 17 15 13 20 20 H 1.48503 * 109.47197 * 240.00418 * 17 15 13 21 21 C 1.46498 * 119.99891 * 186.21585 * 12 10 6 22 22 C 1.55234 * 110.58074 * 229.93171 * 21 12 10 23 23 C 1.54889 * 102.58907 * 203.33678 * 22 21 12 24 24 C 1.54271 * 104.31320 * 37.93121 * 23 22 21 25 25 C 1.53883 * 106.59405 * 336.32607 * 24 23 22 26 26 H 1.09007 * 109.47267 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47188 * 299.99701 * 1 2 3 28 28 H 1.09001 * 109.47301 * 59.99790 * 1 2 3 29 29 H 1.09005 * 109.46486 * 239.99797 * 2 1 3 30 30 H 1.08993 * 109.46984 * 120.00320 * 2 1 3 31 31 H 1.08995 * 109.47193 * 56.46729 * 5 3 2 32 32 H 1.09001 * 109.46902 * 176.46566 * 5 3 2 33 33 H 1.08992 * 109.47333 * 296.46536 * 5 3 2 34 34 H 1.09000 * 109.47260 * 67.90703 * 9 8 6 35 35 H 1.09005 * 109.46824 * 187.90617 * 9 8 6 36 36 H 1.09000 * 109.46950 * 307.89999 * 9 8 6 37 37 H 0.97000 * 120.00468 * 179.97438 * 16 15 13 38 38 H 1.08999 * 110.43202 * 352.51787 * 21 12 10 39 39 H 1.09007 * 110.89838 * 85.04907 * 22 21 12 40 40 H 1.09004 * 110.76738 * 321.56820 * 22 21 12 41 41 H 1.08998 * 110.48663 * 279.19025 * 23 22 21 42 42 H 1.09000 * 110.48666 * 156.67650 * 23 22 21 43 43 H 1.09003 * 110.03097 * 95.60427 * 24 23 22 44 44 H 1.08994 * 110.03192 * 216.99276 * 24 23 22 45 45 H 1.09003 * 110.02893 * 119.28734 * 25 24 23 46 46 H 1.09005 * 110.02849 * 240.66256 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5950 1.9852 -0.8340 5 6 1.6515 2.1207 1.3152 6 6 3.5631 1.4449 -0.1447 7 1 3.9348 2.4658 -0.0572 8 8 4.1405 0.6381 0.8838 9 6 4.7538 1.3873 1.9349 10 6 3.9406 0.8865 -1.4926 11 8 4.4928 -0.1907 -1.5698 12 7 3.6647 1.5841 -2.6122 13 6 3.1578 2.8546 -2.5209 14 1 2.1838 3.0782 -2.9302 15 6 3.8973 3.8548 -1.9015 16 7 5.0548 3.5695 -1.3488 17 14 3.2460 5.6049 -1.8547 18 1 1.9309 5.6623 -2.5421 19 1 3.0851 6.0356 -0.4426 20 1 4.2039 6.5081 -2.5416 21 6 3.9063 0.9846 -3.9269 22 6 4.7191 1.9534 -4.8273 23 6 4.3575 1.4716 -6.2542 24 6 2.8633 1.0987 -6.1637 25 6 2.5765 0.7892 -4.6838 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 2.0439 1.5428 2.1519 32 1 2.0685 3.1275 1.3418 33 1 0.5655 2.1752 1.3890 34 1 3.9865 1.9191 2.4975 35 1 5.2881 0.7093 2.6004 36 1 5.4546 2.1049 1.5083 37 1 5.5712 4.2677 -0.9167 38 1 4.4285 0.0337 -3.8214 39 1 5.7886 1.8495 -4.6440 40 1 4.3982 2.9839 -4.6746 41 1 4.9526 0.5993 -6.5246 42 1 4.5075 2.2735 -6.9771 43 1 2.2488 1.9355 -6.4959 44 1 2.6599 0.2202 -6.7759 45 1 1.8228 1.4757 -4.2981 46 1 2.2331 -0.2399 -4.5774 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331057955.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:49 Heat of formation + Delta-G solvation = -102.713739 kcal Electronic energy + Delta-G solvation = -25190.274063 eV Core-core repulsion = 21886.267284 eV Total energy + Delta-G solvation = -3304.006779 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.27047 -37.58137 -35.99294 -34.71500 -34.05605 -31.43882 -29.51266 -27.97055 -27.78923 -26.65397 -25.12023 -24.47113 -22.96653 -20.03462 -19.80383 -19.44868 -19.06045 -16.74244 -16.05139 -15.30121 -15.18809 -14.97527 -14.57243 -14.43422 -14.08218 -13.76550 -13.32585 -13.07015 -12.68379 -12.63191 -12.55904 -11.97856 -11.89080 -11.62299 -11.50676 -11.28490 -11.17611 -11.07385 -10.92256 -10.64054 -10.58288 -10.50608 -10.39322 -10.36931 -10.28061 -9.92718 -9.92191 -9.69743 -9.60693 -9.21421 -8.52688 -7.88666 -7.11911 -6.44837 -4.37568 3.05153 3.16000 3.17872 3.97675 4.24983 4.41928 4.82668 5.19810 5.34878 5.36713 5.51281 5.53039 5.61312 5.69619 5.92510 5.95136 6.04150 6.08879 6.09311 6.10680 6.20311 6.24922 6.26929 6.30661 6.37221 6.40386 6.50518 6.51506 6.52194 6.58804 6.60569 6.65853 6.70232 6.75010 6.91461 6.97681 7.04861 7.08224 7.18916 7.28203 7.40829 8.01775 8.14696 8.65103 8.91575 9.65885 10.09619 10.59957 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.013367 B = 0.008418 C = 0.006946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.247507 B = 3325.270131 C = 4030.064870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.112 4.112 3 C -0.096 4.096 4 H 0.095 0.905 5 C -0.143 4.143 6 C 0.081 3.919 7 H 0.124 0.876 8 O -0.370 6.370 9 C 0.034 3.966 10 C 0.529 3.471 11 O -0.595 6.595 12 N -0.456 5.456 13 C -0.323 4.323 14 H 0.079 0.921 15 C 0.047 3.953 16 N -0.863 5.863 17 Si 0.904 3.096 18 H -0.265 1.265 19 H -0.279 1.279 20 H -0.279 1.279 21 C 0.138 3.862 22 C -0.117 4.117 23 C -0.124 4.124 24 C -0.116 4.116 25 C -0.130 4.130 26 H 0.044 0.956 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.031 0.969 35 H 0.070 0.930 36 H 0.043 0.957 37 H 0.271 0.729 38 H 0.078 0.922 39 H 0.054 0.946 40 H 0.083 0.917 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.052 0.948 45 H 0.071 0.929 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.387 0.310 -0.174 5.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C -0.115 4.115 4 H 0.113 0.887 5 C -0.201 4.201 6 C 0.021 3.979 7 H 0.141 0.859 8 O -0.288 6.288 9 C -0.063 4.063 10 C 0.319 3.681 11 O -0.479 6.479 12 N -0.178 5.178 13 C -0.451 4.451 14 H 0.097 0.903 15 C -0.158 4.158 16 N -0.500 5.500 17 Si 0.730 3.270 18 H -0.189 1.189 19 H -0.205 1.205 20 H -0.205 1.205 21 C 0.034 3.966 22 C -0.155 4.155 23 C -0.162 4.162 24 C -0.154 4.154 25 C -0.169 4.169 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.050 0.950 35 H 0.089 0.911 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.073 0.927 40 H 0.102 0.898 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.090 0.910 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.964 -0.344 -0.118 4.977 hybrid contribution -0.085 1.424 0.078 1.428 sum -5.049 1.079 -0.040 5.163 Atomic orbital electron populations 1.21817 0.96999 1.00516 1.01240 1.21439 0.94233 0.96969 1.02317 1.21487 0.95218 0.96194 0.98639 0.88731 1.21875 1.00401 0.99985 0.97789 1.22323 0.91948 0.97756 0.85890 0.85934 1.87849 1.74706 1.33204 1.32993 1.22755 0.96466 0.96488 0.90611 1.20334 0.78489 0.83236 0.86071 1.90490 1.45907 1.23863 1.87599 1.43126 1.59420 1.13502 1.01792 1.19126 1.01419 0.84594 1.39988 0.90296 1.25723 0.94630 0.99486 0.95974 1.69855 1.12119 1.33946 1.34042 0.86211 0.79403 0.83030 0.78359 1.18944 1.20469 1.20456 1.21779 0.93748 0.96490 0.84630 1.22679 0.99164 1.01232 0.92413 1.22314 0.96010 0.99975 0.97950 1.22028 0.96560 1.00103 0.96757 1.22424 0.99472 1.00567 0.94431 0.93675 0.93135 0.93071 0.92191 0.92046 0.92964 0.93232 0.93084 0.95033 0.91131 0.93872 0.91885 0.90340 0.92708 0.89835 0.92512 0.92513 0.92392 0.92904 0.91049 0.93032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.68 37.16 0.36 -1.90 16 2 C -0.11 -2.12 5.00 -26.73 -0.13 -2.25 16 3 C -0.10 -1.91 2.10 -90.62 -0.19 -2.10 16 4 H 0.09 1.96 6.53 -51.93 -0.34 1.62 16 5 C -0.14 -2.42 8.05 37.16 0.30 -2.12 16 6 C 0.08 1.88 1.52 -27.88 -0.04 1.83 16 7 H 0.12 2.99 4.10 -51.93 -0.21 2.77 16 8 O -0.37 -8.50 8.83 -54.97 -0.49 -8.98 16 9 C 0.03 0.63 10.51 101.05 1.06 1.70 16 10 C 0.53 13.74 5.16 -10.98 -0.06 13.68 16 11 O -0.60 -17.27 15.91 -14.19 -0.23 -17.50 16 12 N -0.46 -11.04 2.43 -105.78 -0.26 -11.29 16 13 C -0.32 -7.57 5.02 -14.93 -0.07 -7.65 16 14 H 0.08 1.81 7.17 -52.49 -0.38 1.44 16 15 C 0.05 1.11 4.38 -17.47 -0.08 1.04 16 16 N -0.86 -21.72 10.91 55.50 0.61 -21.12 16 17 Si 0.90 18.41 29.55 -169.99 -5.02 13.38 16 18 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 19 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 20 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 21 C 0.14 3.02 3.25 -66.09 -0.21 2.81 16 22 C -0.12 -2.34 6.39 -24.55 -0.16 -2.50 16 23 C -0.12 -2.00 6.82 -25.07 -0.17 -2.17 16 24 C -0.12 -1.81 6.80 -25.61 -0.17 -1.99 16 25 C -0.13 -2.41 6.43 -25.61 -0.16 -2.58 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.70 6.67 -51.93 -0.35 0.35 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.06 1.29 7.20 -51.93 -0.37 0.91 16 30 H 0.06 1.18 7.76 -51.93 -0.40 0.78 16 31 H 0.05 0.85 6.68 -51.93 -0.35 0.51 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.75 6.76 -51.93 -0.35 0.40 16 34 H 0.03 0.52 6.43 -51.93 -0.33 0.19 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.04 0.84 7.95 -51.93 -0.41 0.43 16 37 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 38 H 0.08 1.87 7.00 -51.93 -0.36 1.51 16 39 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.08 1.80 7.01 -51.93 -0.36 1.44 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.07 1.37 6.90 -51.93 -0.36 1.01 16 46 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 347.99 15.07 5.24 5.24 Total: -1.00 -28.21 347.99 -7.82 -36.03 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -7.95 Total: 8.43 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: 0.26 Total: -4.20 kcal Atomic # 7 Polarization: -32.76 SS G_CDS: 0.35 Total: -32.41 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.71 Total: -26.48 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.02 Total: 13.38 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.21 -7.82 -36.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331057955.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.682 kcal (2) G-P(sol) polarization free energy of solvation -28.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds