Wall clock time and date at job start Tue Mar 31 2020 07:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47229 * 2 1 4 4 H 1.09001 * 109.46927 * 305.00082 * 3 2 1 5 5 C 1.53000 * 109.47066 * 64.99690 * 3 2 1 6 6 C 1.53005 * 109.47336 * 184.99812 * 3 2 1 7 7 H 1.08998 * 109.46616 * 54.55588 * 6 3 2 8 8 O 1.42905 * 109.46821 * 294.55855 * 6 3 2 9 9 C 1.42898 * 113.99503 * 149.99641 * 8 6 3 10 10 C 1.50699 * 109.47041 * 174.55689 * 6 3 2 11 11 O 1.21297 * 119.99391 * 111.42190 * 10 6 3 12 12 N 1.34770 * 119.99860 * 291.41921 * 10 6 3 13 13 C 1.37097 * 120.00436 * 3.38556 * 12 10 6 14 14 H 1.07996 * 119.99905 * 122.38530 * 13 12 10 15 15 C 1.38949 * 119.99662 * 302.38199 * 13 12 10 16 16 N 1.31411 * 119.99709 * 154.91415 * 15 13 12 17 17 Si 1.86798 * 120.00415 * 334.92095 * 15 13 12 18 18 H 1.48502 * 109.47293 * 89.83656 * 17 15 13 19 19 H 1.48500 * 109.46983 * 209.83932 * 17 15 13 20 20 H 1.48496 * 109.46822 * 329.83827 * 17 15 13 21 21 C 1.46505 * 119.99931 * 183.38383 * 12 10 6 22 22 C 1.55234 * 110.47031 * 232.92402 * 21 12 10 23 23 C 1.54893 * 102.58651 * 203.39233 * 22 21 12 24 24 C 1.54272 * 104.31377 * 37.93022 * 23 22 21 25 25 C 1.53871 * 106.59525 * 336.32093 * 24 23 22 26 26 H 1.08996 * 109.47370 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47165 * 300.00096 * 1 2 3 28 28 H 1.09002 * 109.47017 * 60.00435 * 1 2 3 29 29 H 1.08996 * 109.47093 * 239.99407 * 2 1 3 30 30 H 1.09002 * 109.47017 * 119.99565 * 2 1 3 31 31 H 1.08999 * 109.47027 * 180.02562 * 5 3 2 32 32 H 1.08997 * 109.47257 * 299.99676 * 5 3 2 33 33 H 1.08996 * 109.47330 * 60.00176 * 5 3 2 34 34 H 1.09004 * 109.46756 * 179.97438 * 9 8 6 35 35 H 1.08997 * 109.47508 * 300.00011 * 9 8 6 36 36 H 1.09000 * 109.47170 * 60.00468 * 9 8 6 37 37 H 0.97003 * 120.00595 * 180.02562 * 16 15 13 38 38 H 1.09005 * 110.43169 * 355.57333 * 21 12 10 39 39 H 1.08992 * 110.90240 * 85.09841 * 22 21 12 40 40 H 1.09002 * 110.76200 * 321.61748 * 22 21 12 41 41 H 1.08996 * 110.48459 * 279.18486 * 23 22 21 42 42 H 1.09007 * 110.48579 * 156.66872 * 23 22 21 43 43 H 1.08999 * 110.03642 * 95.60724 * 24 23 22 44 44 H 1.09002 * 110.03201 * 216.99286 * 24 23 22 45 45 H 1.09006 * 110.03142 * 119.28679 * 25 24 23 46 46 H 1.08998 * 110.03698 * 240.66846 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 3.5649 1.4443 -0.1257 7 1 3.8574 0.8734 -1.0069 8 8 4.1396 0.8496 1.0397 9 6 5.3846 0.1899 0.8017 10 6 4.0561 2.8627 -0.2601 11 8 4.6952 3.3707 0.6370 12 7 3.7853 3.5665 -1.3771 13 6 3.0047 3.0172 -2.3612 14 1 2.1009 3.5178 -2.6759 15 6 3.3763 1.8166 -2.9536 16 7 2.4648 1.0440 -3.5005 17 14 5.1715 1.3006 -2.9725 18 1 5.4720 0.5091 -1.7525 19 1 5.4360 0.4732 -4.1770 20 1 6.0336 2.5093 -3.0032 21 6 4.3252 4.9187 -1.5397 22 6 3.1881 5.9204 -1.8765 23 6 3.9484 7.0676 -2.5872 24 6 5.0223 6.3488 -3.4298 25 6 5.2619 4.9826 -2.7637 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.9981 3.1543 1.3071 32 1 0.5489 2.1253 1.3968 33 1 2.0697 1.5876 2.1491 34 1 5.7551 -0.2344 1.7349 35 1 5.2400 -0.6068 0.0720 36 1 6.1086 0.9081 0.4169 37 1 2.7240 0.2055 -3.9137 38 1 4.8540 5.2283 -0.6382 39 1 2.7059 6.2812 -0.9681 40 1 2.4592 5.4661 -2.5477 41 1 4.4156 7.7264 -1.8553 42 1 3.2731 7.6316 -3.2307 43 1 4.6649 6.2092 -4.4501 44 1 5.9445 6.9299 -3.4338 45 1 5.0207 4.1799 -3.4607 46 1 6.3008 4.8999 -2.4445 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331057957.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:57 Heat of formation + Delta-G solvation = -92.193762 kcal Electronic energy + Delta-G solvation = -25354.786104 eV Core-core repulsion = 22051.235505 eV Total energy + Delta-G solvation = -3303.550599 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.67092 -37.72440 -36.15156 -35.06105 -34.05017 -31.86994 -29.73496 -28.12831 -27.57882 -26.56502 -25.37604 -24.70554 -23.24907 -20.13832 -20.02346 -19.30233 -19.04614 -17.28726 -16.21832 -15.86529 -15.18280 -14.99169 -14.77414 -14.32652 -14.05040 -13.83757 -13.56799 -13.07563 -13.05334 -12.83115 -12.57058 -12.33325 -12.09312 -11.62203 -11.56193 -11.43351 -11.24153 -11.17523 -10.90810 -10.83048 -10.66007 -10.51764 -10.35599 -10.13373 -10.03293 -9.95531 -9.83409 -9.71685 -9.62015 -9.39776 -8.86995 -8.17693 -7.46344 -6.58169 -4.29599 2.97168 3.14248 3.22385 3.69870 4.02270 4.19142 4.70484 4.75808 5.22870 5.25936 5.41501 5.55965 5.65932 5.70984 5.79664 5.86191 5.98313 6.00952 6.05539 6.10480 6.12414 6.13047 6.15759 6.23433 6.25422 6.30357 6.39979 6.41458 6.42328 6.46081 6.58066 6.69600 6.71386 6.77245 6.84598 6.84717 6.90187 7.06699 7.10982 7.36724 7.61022 7.76446 7.85781 8.42964 8.94013 9.27476 9.72778 10.49862 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.016216 B = 0.007879 C = 0.007569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.318479 B = 3552.907129 C = 3698.282324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C -0.073 4.073 4 H 0.121 0.879 5 C -0.139 4.139 6 C 0.085 3.915 7 H 0.087 0.913 8 O -0.365 6.365 9 C 0.034 3.966 10 C 0.478 3.522 11 O -0.582 6.582 12 N -0.464 5.464 13 C -0.346 4.346 14 H 0.100 0.900 15 C 0.083 3.917 16 N -0.841 5.841 17 Si 0.827 3.173 18 H -0.265 1.265 19 H -0.283 1.283 20 H -0.250 1.250 21 C 0.128 3.872 22 C -0.124 4.124 23 C -0.121 4.121 24 C -0.117 4.117 25 C -0.133 4.133 26 H 0.043 0.957 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.079 0.921 35 H 0.034 0.966 36 H 0.035 0.965 37 H 0.275 0.725 38 H 0.082 0.918 39 H 0.056 0.944 40 H 0.083 0.917 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.053 0.947 45 H 0.082 0.918 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.334 1.421 1.592 2.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.147 4.147 3 C -0.091 4.091 4 H 0.138 0.862 5 C -0.196 4.196 6 C 0.025 3.975 7 H 0.104 0.896 8 O -0.282 6.282 9 C -0.063 4.063 10 C 0.267 3.733 11 O -0.464 6.464 12 N -0.187 5.187 13 C -0.473 4.473 14 H 0.117 0.883 15 C -0.126 4.126 16 N -0.474 5.474 17 Si 0.651 3.349 18 H -0.191 1.191 19 H -0.209 1.209 20 H -0.174 1.174 21 C 0.024 3.976 22 C -0.163 4.163 23 C -0.159 4.159 24 C -0.155 4.155 25 C -0.172 4.172 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.075 0.925 40 H 0.101 0.899 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.072 0.928 45 H 0.101 0.899 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.501 1.508 2.107 2.639 hybrid contribution 1.319 -0.479 -0.668 1.554 sum 1.820 1.030 1.439 2.538 Atomic orbital electron populations 1.21750 0.96382 1.00457 1.01715 1.21420 0.95361 0.96684 1.01200 1.21192 0.90924 0.96944 1.00083 0.86162 1.21755 0.99718 1.00390 0.97783 1.22193 0.95175 0.91494 0.88673 0.89555 1.87859 1.35604 1.71679 1.33057 1.22741 0.87024 0.95679 1.00837 1.21330 0.80966 0.89282 0.81754 1.90529 1.43650 1.71879 1.40388 1.43722 1.46271 1.12944 1.15777 1.18725 1.05018 1.06040 1.17542 0.88251 1.25583 0.96648 0.95809 0.94598 1.69774 1.32919 1.10289 1.34466 0.87912 0.88157 0.80337 0.78447 1.19094 1.20906 1.17365 1.21956 0.93599 0.84873 0.97155 1.22763 0.98351 0.95098 1.00048 1.22277 0.97548 0.97517 0.98571 1.22039 0.98102 0.96162 0.99213 1.22534 0.98404 0.97608 0.98638 0.93826 0.93206 0.92255 0.92113 0.92834 0.93267 0.93362 0.92777 0.90289 0.94701 0.94596 0.91430 0.89960 0.92475 0.89861 0.92363 0.92220 0.92104 0.92848 0.89934 0.93261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.67 37.16 0.36 -1.97 16 2 C -0.11 -2.02 5.25 -26.73 -0.14 -2.16 16 3 C -0.07 -1.51 1.96 -90.62 -0.18 -1.69 16 4 H 0.12 2.74 5.95 -51.93 -0.31 2.43 16 5 C -0.14 -2.69 8.56 37.16 0.32 -2.37 16 6 C 0.08 1.92 1.10 -27.88 -0.03 1.89 16 7 H 0.09 2.03 2.86 -51.93 -0.15 1.88 16 8 O -0.36 -8.00 8.64 -54.99 -0.48 -8.48 16 9 C 0.03 0.65 9.83 101.05 0.99 1.65 16 10 C 0.48 11.61 4.85 -10.99 -0.05 11.56 16 11 O -0.58 -15.40 15.89 -14.22 -0.23 -15.62 16 12 N -0.46 -10.73 1.83 -105.77 -0.19 -10.93 16 13 C -0.35 -8.23 5.51 -14.93 -0.08 -8.31 16 14 H 0.10 2.51 7.00 -52.49 -0.37 2.14 16 15 C 0.08 1.99 3.81 -17.47 -0.07 1.93 16 16 N -0.84 -20.77 13.96 55.50 0.77 -19.99 16 17 Si 0.83 18.84 24.36 -169.99 -4.14 14.70 16 18 H -0.26 -5.92 4.49 56.52 0.25 -5.67 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.25 -5.74 5.57 56.52 0.31 -5.43 16 21 C 0.13 2.66 3.26 -66.08 -0.22 2.45 16 22 C -0.12 -2.23 6.42 -24.55 -0.16 -2.39 16 23 C -0.12 -1.81 6.82 -25.07 -0.17 -1.98 16 24 C -0.12 -1.84 6.80 -25.61 -0.17 -2.01 16 25 C -0.13 -2.58 5.60 -25.62 -0.14 -2.72 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.74 6.56 -51.93 -0.34 0.40 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.05 0.96 7.97 -51.93 -0.41 0.54 16 31 H 0.05 1.03 7.40 -51.93 -0.38 0.64 16 32 H 0.05 0.81 6.56 -51.93 -0.34 0.47 16 33 H 0.05 1.04 7.55 -51.93 -0.39 0.65 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.03 0.63 7.52 -51.93 -0.39 0.24 16 36 H 0.04 0.73 8.00 -51.93 -0.42 0.31 16 37 H 0.28 6.51 8.31 -40.82 -0.34 6.17 16 38 H 0.08 1.81 6.98 -51.93 -0.36 1.45 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.08 1.59 6.48 -51.93 -0.34 1.25 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.08 1.76 5.20 -51.93 -0.27 1.49 16 46 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 337.07 15.07 5.08 5.08 Total: -1.00 -26.47 337.07 -6.99 -33.46 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -8.07 Total: 7.93 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: 0.26 Total: -6.14 kcal Atomic # 7 Polarization: -31.50 SS G_CDS: 0.58 Total: -30.92 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.70 Total: -24.10 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -4.14 Total: 14.70 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -26.47 -6.99 -33.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331057957.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.736 kcal (2) G-P(sol) polarization free energy of solvation -26.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds