Wall clock time and date at job start Tue Mar 31 2020 06:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46897 * 2 1 4 4 C 1.53006 * 109.46897 * 180.02562 * 3 2 1 5 5 O 1.42902 * 109.46937 * 179.97438 * 4 3 2 6 6 C 1.42896 * 113.99946 * 179.97438 * 5 4 3 7 7 H 1.09007 * 112.85165 * 21.68911 * 6 5 4 8 8 C 1.53785 * 113.61502 * 250.49509 * 6 5 4 9 9 C 1.53780 * 87.07939 * 219.93131 * 8 6 5 10 10 H 1.08999 * 113.61708 * 270.79749 * 9 8 6 11 11 N 1.46500 * 113.61270 * 139.98027 * 9 8 6 12 12 C 1.46509 * 119.99948 * 356.19158 * 11 9 8 13 13 C 1.34778 * 120.00482 * 176.18924 * 11 9 8 14 14 O 1.21684 * 119.99558 * 0.02562 * 13 11 9 15 15 C 1.46368 * 120.00243 * 179.97438 * 13 11 9 16 16 H 1.07999 * 120.00233 * 6.24207 * 15 13 11 17 17 C 1.40044 * 120.00113 * 186.23898 * 15 13 11 18 18 N 1.30674 * 119.99847 * 7.07633 * 17 15 13 19 19 Si 1.86795 * 120.00444 * 187.07639 * 17 15 13 20 20 H 1.48496 * 109.47210 * 84.98964 * 19 17 15 21 21 H 1.48504 * 109.46877 * 324.98936 * 19 17 15 22 22 H 1.48500 * 109.47294 * 204.99340 * 19 17 15 23 23 C 1.53776 * 87.17528 * 25.39058 * 9 8 6 24 24 C 1.53000 * 113.61876 * 89.15282 * 23 9 8 25 25 C 1.52999 * 113.61665 * 220.06052 * 23 9 8 26 26 H 1.08997 * 109.47085 * 300.00173 * 1 2 3 27 27 H 1.08997 * 109.46575 * 60.00206 * 1 2 3 28 28 H 1.09000 * 109.46887 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47265 * 239.99446 * 2 1 3 30 30 H 1.09009 * 109.46961 * 119.99724 * 2 1 3 31 31 H 1.08997 * 109.47394 * 60.00017 * 3 2 1 32 32 H 1.08997 * 109.47340 * 299.99325 * 3 2 1 33 33 H 1.08991 * 109.47265 * 59.99446 * 4 3 2 34 34 H 1.08997 * 109.46575 * 299.99793 * 4 3 2 35 35 H 1.09006 * 113.61202 * 105.38209 * 8 6 5 36 36 H 1.08995 * 113.69106 * 334.49549 * 8 6 5 37 37 H 1.09005 * 109.46782 * 269.99083 * 12 11 9 38 38 H 1.09000 * 109.46846 * 29.98515 * 12 11 9 39 39 H 1.08994 * 109.47191 * 149.98774 * 12 11 9 40 40 H 0.96997 * 120.00178 * 180.02562 * 18 17 15 41 41 H 1.09001 * 109.46625 * 65.17186 * 24 23 9 42 42 H 1.08991 * 109.47506 * 185.17434 * 24 23 9 43 43 H 1.09007 * 109.47092 * 305.17887 * 24 23 9 44 44 H 1.08996 * 109.46875 * 59.99402 * 25 23 9 45 45 H 1.09000 * 109.47550 * 179.97438 * 25 23 9 46 46 H 1.09006 * 109.46784 * 299.99941 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 8 4.0464 2.7898 -0.0012 6 6 5.4708 2.9027 -0.0013 7 1 5.9666 2.0055 -0.3721 8 6 6.0478 3.4209 1.3267 9 6 7.0331 4.2487 0.4848 10 1 7.9565 3.7201 0.2481 11 7 7.2677 5.5954 1.0116 12 6 6.5242 6.0631 2.1842 13 6 8.1675 6.4042 0.4177 14 8 8.7847 6.0159 -0.5565 15 6 8.4014 7.7499 0.9437 16 1 7.9297 8.0593 1.8647 17 6 9.2370 8.6364 0.2529 18 7 9.6968 8.3153 -0.9274 19 14 9.6942 10.2777 1.0184 20 1 10.8644 10.0970 1.9147 21 1 8.5447 10.7951 1.8034 22 1 10.0370 11.2459 -0.0541 23 6 5.9898 4.2019 -0.6439 24 6 4.9835 5.3534 -0.5966 25 6 6.5983 3.9995 -2.0330 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 1.6767 1.9564 0.8899 32 1 1.6768 1.9563 -0.8900 33 1 3.9330 0.9288 -0.8907 34 1 3.9337 0.9286 0.8891 35 1 6.5281 2.6471 1.9256 36 1 5.3478 4.0274 1.9013 37 1 5.6030 6.5478 1.8607 38 1 6.2828 5.2140 2.8237 39 1 7.1336 6.7752 2.7405 40 1 10.2758 8.9290 -1.4058 41 1 5.5014 6.2959 -0.7740 42 1 4.2252 5.2051 -1.3653 43 1 4.5070 5.3795 0.3835 44 1 7.1452 3.0570 -2.0563 45 1 5.8031 3.9763 -2.7782 46 1 7.2801 4.8208 -2.2542 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332073928.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:23 Heat of formation + Delta-G solvation = -75.579564 kcal Electronic energy + Delta-G solvation = -23485.994081 eV Core-core repulsion = 20183.163928 eV Total energy + Delta-G solvation = -3302.830153 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.07708 -37.50411 -36.25525 -34.70146 -32.98220 -32.40425 -30.04923 -29.17832 -26.86862 -26.51838 -25.74385 -23.86007 -22.94199 -21.77941 -21.29965 -19.57785 -17.59331 -16.66995 -16.26434 -16.09507 -15.49521 -15.02898 -14.94546 -14.42474 -14.16422 -13.99950 -13.61713 -13.27612 -12.86275 -12.67499 -12.36139 -12.23101 -12.00758 -11.77440 -11.57508 -11.47889 -11.40932 -11.30857 -11.19208 -11.14051 -11.02593 -10.91886 -10.79341 -10.73710 -10.30871 -10.19380 -10.11256 -9.94564 -9.85889 -9.01960 -8.80173 -7.50647 -7.07944 -6.18354 -4.58849 3.16061 3.22767 3.24897 3.72016 4.13060 4.58638 4.64967 4.70044 4.82398 4.87716 4.95329 4.97045 5.13797 5.15661 5.26758 5.35270 5.42367 5.58483 5.61987 5.65163 5.76052 5.80906 5.84157 5.89097 5.98375 6.00413 6.05650 6.08866 6.12089 6.20466 6.33038 6.42852 6.48205 6.58443 6.66337 6.69067 6.82135 7.01425 7.04576 7.48429 7.48892 7.68010 8.20189 8.42443 9.06601 9.50070 10.62289 10.81475 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.037152 B = 0.003425 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.476176 B = 8174.288131 C = 8400.739176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.119 4.119 4 C 0.060 3.940 5 O -0.367 6.367 6 C 0.069 3.931 7 H 0.081 0.919 8 C -0.166 4.166 9 C 0.153 3.847 10 H 0.089 0.911 11 N -0.632 5.632 12 C 0.099 3.901 13 C 0.562 3.438 14 O -0.575 6.575 15 C -0.545 4.545 16 H 0.071 0.929 17 C 0.090 3.910 18 N -0.769 5.769 19 Si 0.904 3.096 20 H -0.272 1.272 21 H -0.266 1.266 22 H -0.281 1.281 23 C -0.084 4.084 24 C -0.102 4.102 25 C -0.132 4.132 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.044 0.956 34 H 0.044 0.956 35 H 0.064 0.936 36 H 0.097 0.903 37 H 0.032 0.968 38 H 0.044 0.956 39 H 0.069 0.931 40 H 0.268 0.732 41 H 0.061 0.939 42 H 0.044 0.956 43 H 0.052 0.948 44 H 0.044 0.956 45 H 0.043 0.957 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.385 -12.609 3.242 18.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.156 4.156 4 C -0.017 4.017 5 O -0.286 6.286 6 C 0.011 3.989 7 H 0.099 0.901 8 C -0.204 4.204 9 C 0.047 3.953 10 H 0.107 0.893 11 N -0.369 5.369 12 C -0.046 4.046 13 C 0.368 3.632 14 O -0.458 6.458 15 C -0.582 4.582 16 H 0.089 0.911 17 C -0.130 4.130 18 N -0.398 5.398 19 Si 0.729 3.271 20 H -0.197 1.197 21 H -0.190 1.190 22 H -0.206 1.206 23 C -0.086 4.086 24 C -0.159 4.159 25 C -0.190 4.190 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.083 0.917 36 H 0.115 0.885 37 H 0.050 0.950 38 H 0.062 0.938 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.046 -12.597 2.543 18.312 hybrid contribution 0.354 0.523 0.476 0.791 sum -12.692 -12.074 3.020 17.776 Atomic orbital electron populations 1.21754 0.95551 1.01548 1.02033 1.21447 0.96116 0.96342 1.02081 1.21542 0.93924 0.96873 1.03294 1.22500 0.94759 0.84841 0.99618 1.87955 1.20991 1.25048 1.94592 1.23793 0.80341 0.97911 0.96859 0.90118 1.23867 0.99378 0.99866 0.97322 1.21799 0.95094 0.85660 0.92716 0.89323 1.47822 1.44148 1.13123 1.31844 1.21477 0.96076 0.98369 0.88633 1.18162 0.77536 0.85007 0.82544 1.90572 1.50788 1.75890 1.28537 1.20995 1.30589 0.96936 1.09687 0.91080 1.25693 0.94284 0.99040 0.93958 1.69986 1.24699 1.34695 1.10408 0.86453 0.79482 0.81846 0.79358 1.19708 1.19010 1.20604 1.22590 0.96226 0.93742 0.96063 1.21195 0.96739 0.97183 1.00789 1.21688 1.00141 1.02174 0.94961 0.92631 0.92620 0.92760 0.91948 0.91952 0.91224 0.91218 0.93791 0.93813 0.91686 0.88520 0.94956 0.93758 0.91233 0.92158 0.91983 0.93673 0.92931 0.93657 0.93803 0.90293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.68 16 2 C -0.12 -0.94 5.93 -26.73 -0.16 -1.10 16 3 C -0.12 -1.15 5.58 -26.73 -0.15 -1.30 16 4 C 0.06 0.67 5.79 37.16 0.22 0.89 16 5 O -0.37 -5.38 9.56 -35.23 -0.34 -5.71 16 6 C 0.07 1.05 3.72 -25.82 -0.10 0.95 16 7 H 0.08 1.12 7.72 -51.93 -0.40 0.71 16 8 C -0.17 -2.59 6.32 -25.92 -0.16 -2.75 16 9 C 0.15 3.01 3.32 -67.12 -0.22 2.79 16 10 H 0.09 1.88 7.98 -51.93 -0.41 1.46 16 11 N -0.63 -14.24 2.19 -174.66 -0.38 -14.62 16 12 C 0.10 1.85 8.89 59.85 0.53 2.39 16 13 C 0.56 15.72 7.59 -12.99 -0.10 15.62 16 14 O -0.58 -18.06 14.38 5.20 0.07 -17.98 16 15 C -0.55 -15.22 8.76 -35.64 -0.31 -15.54 16 16 H 0.07 1.83 5.95 -52.49 -0.31 1.52 16 17 C 0.09 2.49 5.48 -17.37 -0.10 2.40 16 18 N -0.77 -22.88 11.91 55.55 0.66 -22.22 16 19 Si 0.90 20.17 29.56 -169.99 -5.03 15.15 16 20 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 23 C -0.08 -1.54 1.35 -153.61 -0.21 -1.74 16 24 C -0.10 -1.90 7.30 37.16 0.27 -1.63 16 25 C -0.13 -2.46 9.20 37.16 0.34 -2.11 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.10 1.51 5.62 -51.93 -0.29 1.22 16 37 H 0.03 0.59 7.27 -51.93 -0.38 0.21 16 38 H 0.04 0.70 6.04 -51.93 -0.31 0.39 16 39 H 0.07 1.35 6.02 -51.93 -0.31 1.03 16 40 H 0.27 7.27 8.29 -40.82 -0.34 6.93 16 41 H 0.06 1.35 7.96 -51.93 -0.41 0.94 16 42 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.05 0.94 6.39 -51.92 -0.33 0.61 16 44 H 0.04 0.76 7.95 -51.93 -0.41 0.34 16 45 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.08 1.78 7.48 -51.93 -0.39 1.39 16 LS Contribution 360.44 15.07 5.43 5.43 Total: -1.00 -32.47 360.44 -7.53 -40.00 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -8.18 Total: 1.79 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: 0.22 Total: -1.82 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.28 Total: -36.84 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -0.26 Total: -23.70 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.03 Total: 15.15 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.47 -7.53 -40.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332073928.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.583 kcal (2) G-P(sol) polarization free energy of solvation -32.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds