Wall clock time and date at job start Tue Mar 31 2020 06:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47418 * 2 1 4 4 C 1.53004 * 109.46985 * 179.97438 * 3 2 1 5 5 O 1.42902 * 109.46813 * 180.02562 * 4 3 2 6 6 C 1.42905 * 113.99568 * 180.02562 * 5 4 3 7 7 H 1.09002 * 112.85073 * 338.30446 * 6 5 4 8 8 C 1.53781 * 113.61164 * 109.50426 * 6 5 4 9 9 C 1.53788 * 87.07969 * 89.20040 * 8 6 5 10 10 H 1.08997 * 113.60673 * 270.79342 * 9 8 6 11 11 N 1.46495 * 113.61283 * 139.98074 * 9 8 6 12 12 C 1.46502 * 120.00371 * 356.16265 * 11 9 8 13 13 C 1.34780 * 119.99914 * 176.16472 * 11 9 8 14 14 O 1.21695 * 119.99888 * 359.97438 * 13 11 9 15 15 C 1.46373 * 120.00187 * 179.97438 * 13 11 9 16 16 H 1.07991 * 119.99912 * 359.97438 * 15 13 11 17 17 C 1.40052 * 119.99661 * 180.27610 * 15 13 11 18 18 N 1.30668 * 120.00232 * 359.71828 * 17 15 13 19 19 Si 1.86801 * 119.99537 * 179.72510 * 17 15 13 20 20 H 1.48497 * 109.47268 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47048 * 120.00069 * 19 17 15 22 22 H 1.48498 * 109.46968 * 239.99594 * 19 17 15 23 23 C 1.53777 * 113.68562 * 207.03937 * 6 5 4 24 24 C 1.53003 * 113.61424 * 156.32630 * 23 6 5 25 25 C 1.52998 * 113.61741 * 25.42070 * 23 6 5 26 26 H 1.08995 * 109.47845 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47122 * 300.00530 * 1 2 3 28 28 H 1.09010 * 109.46669 * 59.99950 * 1 2 3 29 29 H 1.09007 * 109.46933 * 239.99546 * 2 1 3 30 30 H 1.09004 * 109.46760 * 120.00490 * 2 1 3 31 31 H 1.08997 * 109.46893 * 59.99763 * 3 2 1 32 32 H 1.09003 * 109.46840 * 299.99787 * 3 2 1 33 33 H 1.09007 * 109.47164 * 60.00298 * 4 3 2 34 34 H 1.08997 * 109.47394 * 300.00122 * 4 3 2 35 35 H 1.08993 * 113.61922 * 334.64664 * 8 6 5 36 36 H 1.09001 * 113.61007 * 203.73918 * 8 6 5 37 37 H 1.09006 * 109.46859 * 270.71963 * 12 11 9 38 38 H 1.08999 * 109.46930 * 30.72024 * 12 11 9 39 39 H 1.09001 * 109.46854 * 150.71946 * 12 11 9 40 40 H 0.97003 * 119.99946 * 180.02562 * 18 17 15 41 41 H 1.08998 * 109.47458 * 162.03697 * 24 23 6 42 42 H 1.09002 * 109.46683 * 282.03521 * 24 23 6 43 43 H 1.08999 * 109.47316 * 42.03091 * 24 23 6 44 44 H 1.08998 * 109.47423 * 322.50030 * 25 23 6 45 45 H 1.09007 * 109.46987 * 82.50328 * 25 23 6 46 46 H 1.09000 * 109.47229 * 202.49815 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4423 0.0006 5 8 4.0464 2.7896 0.0012 6 6 5.4710 2.9023 0.0013 7 1 5.9666 2.0051 0.3722 8 6 6.0480 3.4205 -1.3267 9 6 5.8846 4.8383 -0.7537 10 1 4.9115 5.2834 -0.9610 11 7 6.9994 5.7329 -1.0746 12 6 8.1646 5.2204 -1.7999 13 6 6.9532 7.0274 -0.7024 14 8 5.9852 7.4533 -0.1003 15 6 8.0673 7.9212 -1.0225 16 1 8.9265 7.5433 -1.5564 17 6 8.0217 9.2651 -0.6306 18 7 6.9822 9.7223 0.0158 19 14 9.4469 10.4038 -1.0324 20 1 10.4941 9.6470 -1.7644 21 1 8.9623 11.5238 -1.8784 22 1 10.0176 10.9458 0.2269 23 6 5.9880 4.2011 0.6421 24 6 7.4225 4.0983 1.1641 25 6 5.0240 4.8060 1.6647 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9338 0.9284 -0.8892 34 1 3.9330 0.9286 0.8908 35 1 5.4098 3.2211 -2.1874 36 1 7.0864 3.1338 -1.4929 37 1 8.8978 4.8412 -1.0880 38 1 7.8532 4.4147 -2.4647 39 1 8.6096 6.0241 -2.3866 40 1 6.9505 10.6531 0.2869 41 1 7.8305 5.0992 1.3051 42 1 7.4255 3.5673 2.1160 43 1 8.0335 3.5551 0.4432 44 1 3.9984 4.6717 1.3210 45 1 5.1536 4.3074 2.6254 46 1 5.2334 5.8698 1.7765 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332073929.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:26 Heat of formation + Delta-G solvation = -72.550701 kcal Electronic energy + Delta-G solvation = -23533.947839 eV Core-core repulsion = 20231.249028 eV Total energy + Delta-G solvation = -3302.698812 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.12303 -37.48324 -36.20824 -34.66852 -32.94171 -32.37255 -30.05201 -29.07481 -26.99150 -26.43418 -25.70985 -23.78370 -23.16486 -21.70810 -21.26454 -19.56699 -17.75884 -16.49590 -16.16415 -15.97640 -15.53949 -15.02162 -14.85103 -14.63109 -14.21823 -13.98598 -13.69251 -12.96210 -12.77103 -12.70951 -12.41024 -12.18707 -11.99261 -11.83708 -11.64654 -11.48323 -11.42377 -11.31643 -11.22055 -11.06032 -11.02954 -10.94132 -10.82786 -10.70063 -10.34420 -10.23344 -10.05247 -9.80838 -9.64838 -9.08508 -8.80162 -7.46548 -7.03900 -6.13037 -4.57870 3.14830 3.23252 3.27060 3.63783 4.13008 4.61649 4.66402 4.72513 4.77355 4.88936 4.90965 5.06432 5.16613 5.28436 5.30513 5.39496 5.46776 5.57499 5.64101 5.64697 5.76168 5.78753 5.85556 5.91283 5.95339 6.03978 6.06282 6.08928 6.15337 6.17562 6.27312 6.39974 6.54708 6.59527 6.63687 6.72424 6.85862 6.94388 7.16129 7.48318 7.49893 7.71575 8.22661 8.45355 9.08423 9.53812 10.65265 10.85672 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.033064 B = 0.003536 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.641600 B = 7915.601392 C = 8171.403656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.120 4.120 4 C 0.062 3.938 5 O -0.359 6.359 6 C 0.072 3.928 7 H 0.067 0.933 8 C -0.170 4.170 9 C 0.162 3.838 10 H 0.092 0.908 11 N -0.637 5.637 12 C 0.098 3.902 13 C 0.559 3.441 14 O -0.571 6.571 15 C -0.544 4.544 16 H 0.071 0.929 17 C 0.088 3.912 18 N -0.767 5.767 19 Si 0.903 3.097 20 H -0.264 1.264 21 H -0.277 1.277 22 H -0.277 1.277 23 C -0.090 4.090 24 C -0.113 4.113 25 C -0.126 4.126 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.044 0.956 34 H 0.044 0.956 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.029 0.971 38 H 0.043 0.957 39 H 0.070 0.930 40 H 0.266 0.734 41 H 0.071 0.929 42 H 0.044 0.956 43 H 0.050 0.950 44 H 0.059 0.941 45 H 0.036 0.964 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.060 -17.649 -0.598 18.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.158 4.158 4 C -0.015 4.015 5 O -0.278 6.278 6 C 0.013 3.987 7 H 0.085 0.915 8 C -0.208 4.208 9 C 0.057 3.943 10 H 0.110 0.890 11 N -0.374 5.374 12 C -0.046 4.046 13 C 0.364 3.636 14 O -0.453 6.453 15 C -0.581 4.581 16 H 0.089 0.911 17 C -0.132 4.132 18 N -0.396 5.396 19 Si 0.728 3.272 20 H -0.188 1.188 21 H -0.203 1.203 22 H -0.203 1.203 23 C -0.092 4.092 24 C -0.171 4.171 25 C -0.184 4.184 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.088 0.912 36 H 0.111 0.889 37 H 0.048 0.952 38 H 0.061 0.939 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.055 0.945 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.812 -17.076 -0.186 17.742 hybrid contribution 1.000 0.245 -0.286 1.069 sum -3.812 -16.830 -0.472 17.263 Atomic orbital electron populations 1.21755 0.95515 1.01528 1.02119 1.21438 0.96159 0.96271 1.02020 1.21552 0.93762 0.96928 1.03526 1.22519 0.94847 0.84477 0.99641 1.87911 1.20085 1.25254 1.94503 1.23082 0.80907 0.97779 0.96926 0.91476 1.23860 1.01340 0.98053 0.97594 1.22018 0.92362 0.87531 0.92383 0.89043 1.47931 1.17670 1.10412 1.61419 1.21467 0.88973 0.98807 0.95398 1.18191 0.87896 0.78712 0.78814 1.90596 1.35819 1.74361 1.44521 1.21053 1.04097 0.93903 1.39034 0.91125 1.25717 0.95822 0.98486 0.93150 1.70034 1.26924 1.14622 1.28038 0.86391 0.81856 0.80294 0.78656 1.18837 1.20256 1.20264 1.22519 0.95691 0.93669 0.97317 1.21418 0.93980 1.02662 0.99007 1.21514 0.98768 1.01794 0.96289 0.92771 0.92580 0.92586 0.91971 0.91976 0.91076 0.91086 0.93740 0.93724 0.91185 0.88875 0.95215 0.93864 0.91143 0.92306 0.91026 0.93697 0.93144 0.92216 0.94472 0.91007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.12 -0.97 5.93 -26.73 -0.16 -1.13 16 3 C -0.12 -1.23 5.58 -26.73 -0.15 -1.38 16 4 C 0.06 0.72 5.79 37.16 0.22 0.93 16 5 O -0.36 -5.50 8.82 -35.23 -0.31 -5.81 16 6 C 0.07 1.09 3.79 -25.92 -0.10 0.99 16 7 H 0.07 0.89 7.85 -51.93 -0.41 0.48 16 8 C -0.17 -2.66 6.32 -25.92 -0.16 -2.83 16 9 C 0.16 3.29 3.26 -67.12 -0.22 3.08 16 10 H 0.09 2.13 7.98 -51.93 -0.41 1.72 16 11 N -0.64 -14.44 2.18 -174.66 -0.38 -14.82 16 12 C 0.10 1.81 8.86 59.85 0.53 2.34 16 13 C 0.56 15.79 7.61 -12.99 -0.10 15.69 16 14 O -0.57 -18.25 14.30 5.19 0.07 -18.17 16 15 C -0.54 -15.25 8.74 -35.63 -0.31 -15.56 16 16 H 0.07 1.82 5.98 -52.49 -0.31 1.51 16 17 C 0.09 2.45 5.50 -17.37 -0.10 2.35 16 18 N -0.77 -23.04 11.83 55.55 0.66 -22.38 16 19 Si 0.90 20.22 29.56 -169.99 -5.02 15.20 16 20 H -0.26 -5.70 7.11 56.52 0.40 -5.29 16 21 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 23 C -0.09 -1.64 1.35 -153.70 -0.21 -1.84 16 24 C -0.11 -1.95 7.95 37.16 0.30 -1.65 16 25 C -0.13 -2.45 9.04 37.16 0.34 -2.12 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.09 1.32 5.63 -51.93 -0.29 1.03 16 37 H 0.03 0.51 7.24 -51.93 -0.38 0.14 16 38 H 0.04 0.67 6.09 -51.93 -0.32 0.35 16 39 H 0.07 1.36 6.05 -51.93 -0.31 1.05 16 40 H 0.27 7.27 8.29 -40.82 -0.34 6.94 16 41 H 0.07 1.47 7.94 -51.93 -0.41 1.06 16 42 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.05 0.77 6.43 -51.93 -0.33 0.44 16 44 H 0.06 1.15 6.97 -51.93 -0.36 0.79 16 45 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.07 1.67 7.50 -51.93 -0.39 1.28 16 LS Contribution 359.31 15.07 5.41 5.41 Total: -1.00 -33.05 359.31 -7.47 -40.52 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -8.14 Total: 1.93 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: 0.24 Total: -1.88 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.28 Total: -37.20 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.24 Total: -23.99 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.05 -7.47 -40.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332073929.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.032 kcal (2) G-P(sol) polarization free energy of solvation -33.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds