Wall clock time and date at job start Tue Mar 31 2020 06:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47120 * 2 1 4 4 C 1.52999 * 109.47072 * 180.02562 * 3 2 1 5 5 O 1.42908 * 109.47020 * 179.97438 * 4 3 2 6 6 C 1.42899 * 113.99960 * 179.97438 * 5 4 3 7 7 H 1.09002 * 112.84648 * 18.80570 * 6 5 4 8 8 C 1.53777 * 113.61302 * 247.50080 * 6 5 4 9 9 C 1.53784 * 87.07699 * 220.01727 * 8 6 5 10 10 H 1.09006 * 113.69003 * 139.99145 * 9 8 6 11 11 N 1.46498 * 113.61578 * 270.88172 * 9 8 6 12 12 C 1.46499 * 119.99862 * 31.22438 * 11 9 8 13 13 C 1.34779 * 120.00387 * 211.22759 * 11 9 8 14 14 O 1.21691 * 119.99762 * 359.97438 * 13 11 9 15 15 C 1.46371 * 120.00156 * 180.02562 * 13 11 9 16 16 H 1.08000 * 120.00282 * 359.97438 * 15 13 11 17 17 C 1.40052 * 119.99835 * 180.02562 * 15 13 11 18 18 N 1.30675 * 119.99905 * 359.97438 * 17 15 13 19 19 Si 1.86794 * 119.99887 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47309 * 59.99618 * 19 17 15 21 21 H 1.48502 * 109.47245 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47250 * 300.00039 * 19 17 15 23 23 C 1.53775 * 87.08340 * 25.43211 * 9 8 6 24 24 C 1.53001 * 113.61685 * 220.01948 * 23 9 8 25 25 C 1.52999 * 113.69213 * 89.12576 * 23 9 8 26 26 H 1.08992 * 109.47330 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47562 * 59.99580 * 1 2 3 28 28 H 1.09009 * 109.46828 * 299.99910 * 1 2 3 29 29 H 1.08996 * 109.47285 * 119.99744 * 2 1 3 30 30 H 1.08998 * 109.46658 * 240.00571 * 2 1 3 31 31 H 1.09001 * 109.47247 * 300.00613 * 3 2 1 32 32 H 1.09004 * 109.47101 * 59.99835 * 3 2 1 33 33 H 1.08996 * 109.47061 * 299.99577 * 4 3 2 34 34 H 1.08998 * 109.46929 * 60.00434 * 4 3 2 35 35 H 1.08997 * 113.61532 * 334.56131 * 8 6 5 36 36 H 1.08994 * 113.61760 * 105.47150 * 8 6 5 37 37 H 1.09001 * 109.46928 * 90.78440 * 12 11 9 38 38 H 1.09005 * 109.47246 * 210.77984 * 12 11 9 39 39 H 1.08995 * 109.47528 * 330.78562 * 12 11 9 40 40 H 0.97001 * 119.99381 * 179.97438 * 18 17 15 41 41 H 1.08997 * 109.47076 * 163.29095 * 24 23 9 42 42 H 1.09005 * 109.46799 * 283.28999 * 24 23 9 43 43 H 1.08999 * 109.46680 * 43.28924 * 24 23 9 44 44 H 1.09001 * 109.47048 * 302.96374 * 25 23 9 45 45 H 1.09002 * 109.47360 * 62.96157 * 25 23 9 46 46 H 1.08998 * 109.47554 * 182.96184 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 8 4.0464 2.7898 -0.0012 6 6 5.4709 2.9027 -0.0013 7 1 5.9679 1.9880 -0.3247 8 6 6.0424 3.4894 1.3002 9 6 7.0298 4.2740 0.4203 10 1 7.2028 5.2954 0.7597 11 7 8.2720 3.5490 0.1420 12 6 8.2621 2.0868 0.0516 13 6 9.4239 4.2270 -0.0309 14 8 9.4320 5.4416 0.0438 15 6 10.6649 3.5026 -0.3095 16 1 10.6576 2.4247 -0.3761 17 6 11.8619 4.2072 -0.4885 18 7 11.8708 5.5114 -0.4073 19 14 13.4458 3.2826 -0.8433 20 1 13.2949 2.5064 -2.1003 21 1 14.5618 4.2511 -0.9911 22 1 13.7397 2.3553 0.2787 23 6 5.9887 4.1674 -0.7064 24 6 6.6001 3.8953 -2.0823 25 6 4.9794 5.3172 -0.7217 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 0.5139 0.8901 29 1 1.8934 -0.5138 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.9337 0.9286 0.8891 34 1 3.9330 0.9288 -0.8909 35 1 5.3387 4.1237 1.8391 36 1 6.5214 2.7483 1.9399 37 1 8.0848 1.7879 -0.9815 38 1 9.2242 1.6958 0.3829 39 1 7.4702 1.6889 0.6860 40 1 12.7000 5.9993 -0.5310 41 1 5.8241 3.5420 -2.7612 42 1 7.0353 4.8144 -2.4746 43 1 7.3765 3.1357 -1.9910 44 1 4.4722 5.3683 0.2418 45 1 5.5010 6.2561 -0.9079 46 1 4.2460 5.1465 -1.5097 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332073930.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:31 Heat of formation + Delta-G solvation = -71.542578 kcal Electronic energy + Delta-G solvation = -23518.500901 eV Core-core repulsion = 20215.845805 eV Total energy + Delta-G solvation = -3302.655096 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.31046 -37.49707 -36.31800 -34.71849 -32.93080 -32.44450 -30.13154 -29.17113 -27.01468 -26.63921 -25.90185 -23.81207 -22.75654 -22.02811 -21.30272 -19.75002 -17.51587 -16.84126 -16.33562 -16.12639 -15.49377 -15.09578 -14.84819 -14.53804 -14.16738 -14.02807 -13.69412 -13.33489 -13.03924 -12.48222 -12.37626 -12.22453 -12.08287 -11.96441 -11.75050 -11.60610 -11.52900 -11.32489 -11.23059 -11.16525 -11.05289 -10.98045 -10.87722 -10.71741 -10.41233 -10.31496 -10.12372 -10.04572 -9.66254 -9.03640 -8.85177 -7.59046 -7.19362 -6.20224 -4.65954 3.14114 3.19399 3.20819 3.76707 4.06073 4.47197 4.53198 4.69970 4.78587 4.86265 4.93770 4.94554 5.15059 5.22390 5.27379 5.37476 5.43146 5.58460 5.61919 5.65299 5.69061 5.79140 5.82292 5.86494 5.88066 6.00400 6.04683 6.07494 6.14382 6.15492 6.20489 6.28570 6.33818 6.46275 6.50726 6.55955 6.67257 6.83600 6.91431 7.43113 7.46013 7.64253 8.13435 8.35289 9.00895 9.41849 10.57060 10.75793 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.030691 B = 0.003573 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.108189 B = 7834.763621 C = 8313.753464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.118 4.118 4 C 0.060 3.940 5 O -0.373 6.373 6 C 0.068 3.932 7 H 0.089 0.911 8 C -0.168 4.168 9 C 0.149 3.851 10 H 0.100 0.900 11 N -0.626 5.626 12 C 0.091 3.909 13 C 0.560 3.440 14 O -0.574 6.574 15 C -0.543 4.543 16 H 0.071 0.929 17 C 0.087 3.913 18 N -0.766 5.766 19 Si 0.906 3.094 20 H -0.268 1.268 21 H -0.280 1.280 22 H -0.268 1.268 23 C -0.097 4.097 24 C -0.131 4.131 25 C -0.111 4.111 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.044 0.956 34 H 0.044 0.956 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.033 0.967 38 H 0.072 0.928 39 H 0.045 0.955 40 H 0.269 0.731 41 H 0.042 0.958 42 H 0.056 0.944 43 H 0.066 0.934 44 H 0.056 0.944 45 H 0.054 0.946 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.321 -10.070 0.224 19.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.156 4.156 4 C -0.017 4.017 5 O -0.292 6.292 6 C 0.010 3.990 7 H 0.107 0.893 8 C -0.207 4.207 9 C 0.042 3.958 10 H 0.118 0.882 11 N -0.362 5.362 12 C -0.053 4.053 13 C 0.366 3.634 14 O -0.456 6.456 15 C -0.580 4.580 16 H 0.089 0.911 17 C -0.133 4.133 18 N -0.395 5.395 19 Si 0.731 3.269 20 H -0.193 1.193 21 H -0.206 1.206 22 H -0.193 1.193 23 C -0.099 4.099 24 C -0.188 4.188 25 C -0.169 4.169 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.051 0.949 38 H 0.091 0.909 39 H 0.064 0.936 40 H 0.080 0.920 41 H 0.061 0.939 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.073 0.927 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.292 -9.056 0.258 18.642 hybrid contribution 0.927 -0.901 -0.202 1.308 sum -15.365 -9.957 0.056 18.309 Atomic orbital electron populations 1.21754 0.95575 1.01565 1.01969 1.21450 0.96080 0.96350 1.02160 1.21539 0.93968 0.96889 1.03169 1.22496 0.94675 0.84834 0.99691 1.87917 1.21487 1.25157 1.94603 1.24135 0.79855 0.98200 0.96767 0.89341 1.23855 0.98880 1.00735 0.97224 1.21382 0.83912 0.97412 0.93103 0.88194 1.47688 1.06987 1.04909 1.76636 1.21608 1.01709 0.82898 0.99053 1.18222 0.81681 0.86877 0.76629 1.90599 1.85098 1.14156 1.55796 1.20951 0.91399 0.93838 1.51764 0.91077 1.25730 1.00002 0.94591 0.92928 1.70012 1.27419 1.07001 1.35066 0.86459 0.81067 0.79831 0.79557 1.19282 1.20562 1.19289 1.22663 0.96204 0.94575 0.96453 1.21656 0.99772 1.02555 0.94797 1.21312 0.97422 0.96506 1.01656 0.92742 0.92655 0.92665 0.91904 0.91906 0.91294 0.91290 0.93779 0.93778 0.89162 0.91197 0.94864 0.90925 0.93602 0.92042 0.93942 0.92498 0.91471 0.92529 0.92650 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.66 16 2 C -0.12 -0.95 5.93 -26.73 -0.16 -1.11 16 3 C -0.12 -1.12 5.58 -26.73 -0.15 -1.27 16 4 C 0.06 0.68 5.78 37.16 0.21 0.89 16 5 O -0.37 -5.33 9.50 -35.23 -0.33 -5.66 16 6 C 0.07 1.03 3.09 -25.92 -0.08 0.95 16 7 H 0.09 1.31 5.51 -51.93 -0.29 1.02 16 8 C -0.17 -2.70 6.76 -25.92 -0.18 -2.88 16 9 C 0.15 2.95 3.86 -67.12 -0.26 2.69 16 10 H 0.10 2.26 7.29 -51.93 -0.38 1.88 16 11 N -0.63 -13.94 2.10 -174.66 -0.37 -14.31 16 12 C 0.09 1.66 7.95 59.85 0.48 2.14 16 13 C 0.56 15.70 7.61 -12.99 -0.10 15.61 16 14 O -0.57 -18.41 14.55 5.20 0.08 -18.34 16 15 C -0.54 -15.02 8.74 -35.63 -0.31 -15.33 16 16 H 0.07 1.79 6.01 -52.49 -0.32 1.47 16 17 C 0.09 2.41 5.50 -17.36 -0.10 2.32 16 18 N -0.77 -22.82 11.83 55.55 0.66 -22.16 16 19 Si 0.91 19.94 29.56 -169.99 -5.02 14.91 16 20 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 21 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 23 C -0.10 -1.66 1.31 -153.70 -0.20 -1.86 16 24 C -0.13 -2.33 8.89 37.16 0.33 -2.00 16 25 C -0.11 -1.75 8.42 37.16 0.31 -1.43 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.09 1.37 7.63 -51.93 -0.40 0.97 16 36 H 0.07 1.09 6.97 -51.93 -0.36 0.73 16 37 H 0.03 0.57 6.46 -51.93 -0.34 0.24 16 38 H 0.07 1.36 6.14 -51.93 -0.32 1.04 16 39 H 0.05 0.70 4.95 -51.93 -0.26 0.45 16 40 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 41 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.07 1.27 5.06 -51.93 -0.26 1.01 16 44 H 0.06 0.84 7.25 -51.93 -0.38 0.47 16 45 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 355.59 15.07 5.36 5.36 Total: -1.00 -32.61 355.59 -7.38 -39.99 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -7.92 Total: 2.17 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 0.17 Total: -1.96 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.29 Total: -36.47 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.26 Total: -24.00 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.61 -7.38 -39.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332073930.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.557 kcal (2) G-P(sol) polarization free energy of solvation -32.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds