Wall clock time and date at job start Tue Mar 31 2020 06:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47155 * 2 1 4 4 C 1.53004 * 109.46984 * 239.99761 * 2 1 3 5 5 O 1.45204 * 109.47368 * 119.99899 * 2 1 3 6 6 C 1.34233 * 116.99555 * 59.99855 * 5 2 1 7 7 O 1.20819 * 120.00137 * 359.97438 * 6 5 2 8 8 C 1.50702 * 119.99458 * 180.02562 * 6 5 2 9 9 C 1.53006 * 109.46734 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47042 * 179.97438 * 9 8 6 11 11 C 1.52993 * 109.47105 * 179.97438 * 10 9 8 12 12 N 1.46504 * 109.47058 * 179.97438 * 11 10 9 13 13 C 1.36935 * 119.99937 * 270.00095 * 12 11 10 14 14 H 1.08003 * 119.99855 * 144.92770 * 13 12 11 15 15 C 1.38814 * 120.00273 * 324.92932 * 13 12 11 16 16 N 1.31620 * 119.99838 * 337.93463 * 15 13 12 17 17 Si 1.86801 * 120.00091 * 157.93681 * 15 13 12 18 18 H 1.48501 * 109.46754 * 89.99914 * 17 15 13 19 19 H 1.48495 * 109.46949 * 209.99670 * 17 15 13 20 20 H 1.48495 * 109.47225 * 330.00128 * 17 15 13 21 21 C 1.46494 * 119.99631 * 90.00309 * 12 11 10 22 22 C 1.53008 * 117.49603 * 183.23516 * 21 12 11 23 23 C 1.53005 * 117.50060 * 114.58020 * 21 12 11 24 24 H 1.09004 * 109.46832 * 300.00156 * 1 2 3 25 25 H 1.08993 * 109.47297 * 59.99509 * 1 2 3 26 26 H 1.08997 * 109.47200 * 180.02562 * 1 2 3 27 27 H 1.09010 * 109.47060 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.46880 * 299.99690 * 3 2 1 29 29 H 1.08991 * 109.47568 * 60.00505 * 3 2 1 30 30 H 1.08997 * 109.47203 * 300.00060 * 4 2 1 31 31 H 1.09000 * 109.46756 * 60.00545 * 4 2 1 32 32 H 1.09000 * 109.46840 * 179.97438 * 4 2 1 33 33 H 1.08992 * 109.47344 * 59.99977 * 8 6 5 34 34 H 1.09002 * 109.47061 * 299.99545 * 8 6 5 35 35 H 1.08999 * 109.46781 * 59.99849 * 9 8 6 36 36 H 1.08998 * 109.46898 * 300.00127 * 9 8 6 37 37 H 1.09002 * 109.46733 * 59.99631 * 10 9 8 38 38 H 1.09002 * 109.46889 * 300.00588 * 10 9 8 39 39 H 1.09004 * 109.46724 * 60.00538 * 11 10 9 40 40 H 1.08991 * 109.47467 * 300.00398 * 11 10 9 41 41 H 0.96995 * 119.99672 * 176.06957 * 16 15 13 42 42 H 1.08998 * 115.55292 * 328.90743 * 21 12 11 43 43 H 1.09004 * 117.49709 * 0.02562 * 22 21 12 44 44 H 1.09001 * 117.49616 * 145.02232 * 22 21 12 45 45 H 1.08992 * 117.50031 * 214.97936 * 23 21 12 46 46 H 1.09007 * 117.49694 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1856 6 6 1.6533 -1.9684 1.3379 7 8 0.9559 -2.5025 0.5083 8 6 2.1174 -2.7434 2.5442 9 6 1.5698 -4.1704 2.4751 10 6 2.0415 -4.9575 3.6995 11 6 1.4935 -6.3842 3.6307 12 7 1.9456 -7.1380 4.8028 13 6 3.1244 -7.8333 4.7567 14 1 3.7444 -7.9040 5.6383 15 6 3.5226 -8.4471 3.5771 16 7 2.6302 -8.7455 2.6568 17 14 5.3249 -8.8498 3.2959 18 1 5.6139 -10.2122 3.8112 19 1 5.6228 -8.7970 1.8421 20 1 6.1705 -7.8604 4.0108 21 6 1.1365 -7.1479 6.0240 22 6 1.6986 -7.8906 7.2378 23 6 0.5239 -8.4822 6.4548 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.1301 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9563 0.8899 30 1 1.6766 -1.7490 -1.2492 31 1 1.6766 -0.2074 -2.1392 32 1 3.1299 -0.7209 -1.2495 33 1 1.7532 -2.2584 3.4498 34 1 3.2069 -2.7722 2.5604 35 1 1.9337 -4.6557 1.5694 36 1 0.4804 -4.1412 2.4590 37 1 1.6780 -4.4722 4.6053 38 1 3.1310 -4.9866 3.7151 39 1 1.8567 -6.8696 2.7248 40 1 0.4041 -6.3547 3.6153 41 1 2.9148 -9.1221 1.8094 42 1 0.5565 -6.2442 6.2111 43 1 2.6707 -8.3714 7.1279 44 1 1.4882 -7.4756 8.2236 45 1 -0.4587 -8.4561 6.9256 46 1 0.7226 -9.3525 5.8293 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343536148.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:52 Heat of formation + Delta-G solvation = -60.914422 kcal Electronic energy + Delta-G solvation = -22702.381949 eV Core-core repulsion = 19400.187724 eV Total energy + Delta-G solvation = -3302.194225 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.81204 -37.35151 -36.97089 -34.77737 -34.15465 -33.00994 -30.72120 -28.35435 -27.61035 -27.57056 -24.99350 -23.42194 -21.60985 -21.26440 -20.34209 -19.66200 -19.48959 -17.03060 -16.52802 -16.34377 -16.15699 -15.41226 -14.85524 -14.55993 -14.21465 -14.14564 -13.85202 -13.70981 -12.90328 -12.69640 -12.55157 -12.24282 -12.18583 -12.08527 -12.08091 -11.83391 -11.55054 -11.48203 -11.30689 -11.08631 -10.72414 -10.61125 -10.57798 -10.50310 -10.44971 -10.10832 -9.99595 -9.79791 -9.57913 -9.45163 -9.20541 -8.42441 -6.52169 -5.74524 -3.35005 2.32298 2.69013 3.35808 3.44075 3.46773 4.47120 4.51959 4.56399 4.68163 4.74284 4.97440 5.10322 5.25084 5.25675 5.32789 5.33725 5.40938 5.47707 5.52903 5.60506 5.64925 5.77703 5.79387 5.93999 5.97968 6.07785 6.10270 6.13939 6.18519 6.33671 6.38835 6.52372 6.53842 6.57228 6.68000 6.85522 6.87998 7.08692 7.24137 7.27457 7.76361 7.84357 7.91319 8.51447 9.19533 9.83189 10.39034 11.20691 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.019630 B = 0.003439 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.025512 B = 8140.510238 C = 8975.558830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.114 3.886 3 C -0.140 4.140 4 C -0.183 4.183 5 O -0.356 6.356 6 C 0.462 3.538 7 O -0.502 6.502 8 C -0.113 4.113 9 C -0.103 4.103 10 C -0.133 4.133 11 C 0.146 3.854 12 N -0.554 5.554 13 C -0.256 4.256 14 H 0.065 0.935 15 C 0.010 3.990 16 N -0.883 5.883 17 Si 0.894 3.106 18 H -0.286 1.286 19 H -0.289 1.289 20 H -0.278 1.278 21 C 0.122 3.878 22 C -0.197 4.197 23 C -0.223 4.223 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.085 0.915 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.044 0.956 38 H 0.061 0.939 39 H 0.100 0.900 40 H 0.024 0.976 41 H 0.254 0.746 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.452 17.760 -3.505 18.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.078 3.922 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.274 6.274 6 C 0.306 3.694 7 O -0.389 6.389 8 C -0.151 4.151 9 C -0.141 4.141 10 C -0.172 4.172 11 C 0.020 3.980 12 N -0.270 5.270 13 C -0.386 4.386 14 H 0.082 0.918 15 C -0.190 4.190 16 N -0.526 5.526 17 Si 0.723 3.277 18 H -0.213 1.213 19 H -0.215 1.215 20 H -0.203 1.203 21 C 0.013 3.987 22 C -0.236 4.236 23 C -0.265 4.265 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.104 0.896 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.118 0.882 40 H 0.043 0.957 41 H 0.064 0.936 42 H 0.103 0.897 43 H 0.114 0.886 44 H 0.091 0.909 45 H 0.087 0.913 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.642 17.507 -3.965 18.144 hybrid contribution 0.852 -0.239 -0.282 0.929 sum -1.790 17.268 -4.247 17.873 Atomic orbital electron populations 1.22485 0.94148 1.04875 1.02481 1.22136 0.94351 0.92235 0.83433 1.21841 1.02185 0.92821 1.02854 1.22492 1.01674 1.03356 0.96541 1.86575 1.70050 1.25962 1.44807 1.24016 0.77279 0.80166 0.87975 1.90569 1.35203 1.69777 1.43387 1.21579 1.03563 0.96160 0.93771 1.21412 1.00906 0.91206 1.00607 1.22173 1.01572 0.98608 0.94896 1.20964 0.95030 0.88302 0.93719 1.43462 1.21216 1.53512 1.08835 1.19048 0.95379 1.26265 0.97877 0.91772 1.25109 0.97679 0.97059 0.99154 1.70047 1.31831 1.43273 1.07412 0.86457 0.85743 0.78357 0.77190 1.21301 1.21460 1.20305 1.21216 0.96507 0.92092 0.88923 1.23026 0.99131 1.06626 0.94772 1.23366 0.95056 1.02594 1.05443 0.92104 0.91259 0.89635 0.91528 0.90558 0.91554 0.89603 0.91264 0.92043 0.88137 0.87935 0.91211 0.91730 0.93728 0.92063 0.88203 0.95727 0.93582 0.89663 0.88555 0.90859 0.91324 0.89101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.88 8.37 37.15 0.31 -1.57 16 2 C 0.11 1.22 1.13 -90.62 -0.10 1.12 16 3 C -0.14 -1.10 8.85 37.16 0.33 -0.78 16 4 C -0.18 -1.96 8.37 37.16 0.31 -1.65 16 5 O -0.36 -4.53 9.89 -39.27 -0.39 -4.92 16 6 C 0.46 6.48 7.27 36.01 0.26 6.74 16 7 O -0.50 -8.09 11.48 -18.74 -0.22 -8.31 16 8 C -0.11 -1.48 5.81 -27.88 -0.16 -1.64 16 9 C -0.10 -1.66 4.51 -26.73 -0.12 -1.78 16 10 C -0.13 -2.48 5.54 -26.73 -0.15 -2.63 16 11 C 0.15 3.34 5.34 -4.04 -0.02 3.32 16 12 N -0.55 -13.65 2.78 -165.66 -0.46 -14.11 16 13 C -0.26 -6.85 8.63 -15.06 -0.13 -6.98 16 14 H 0.06 1.72 6.55 -52.48 -0.34 1.38 16 15 C 0.01 0.28 4.96 -17.43 -0.09 0.19 16 16 N -0.88 -25.17 11.33 55.49 0.63 -24.54 16 17 Si 0.89 21.33 29.61 -169.99 -5.03 16.29 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 C 0.12 2.63 6.56 -67.93 -0.45 2.19 16 22 C -0.20 -3.94 9.80 -26.69 -0.26 -4.21 16 23 C -0.22 -4.65 10.36 -26.69 -0.28 -4.93 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.08 1.08 5.89 -51.93 -0.31 0.78 16 27 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 1.13 5.89 -51.93 -0.31 0.82 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.07 1.23 8.10 -51.93 -0.42 0.81 16 36 H 0.06 1.05 8.10 -51.93 -0.42 0.63 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.10 2.61 5.35 -51.93 -0.28 2.34 16 40 H 0.02 0.55 8.07 -51.93 -0.42 0.13 16 41 H 0.25 7.01 8.32 -40.82 -0.34 6.67 16 42 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 43 H 0.10 2.09 6.37 -51.93 -0.33 1.76 16 44 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 46 H 0.09 2.16 8.14 -51.93 -0.42 1.74 16 LS Contribution 366.67 15.07 5.53 5.53 Total: -1.00 -29.45 366.67 -8.79 -38.23 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -8.30 Total: 4.44 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: -0.54 Total: -12.61 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.17 Total: -38.65 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -0.60 Total: -13.23 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.45 -8.79 -38.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343536148.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.682 kcal (2) G-P(sol) polarization free energy of solvation -29.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds