Wall clock time and date at job start Tue Mar 31 2020 07:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47319 * 2 1 4 4 H 1.08997 * 109.47877 * 182.65208 * 3 2 1 5 5 N 1.46902 * 109.47067 * 302.65740 * 3 2 1 6 6 C 1.46894 * 110.99748 * 275.41411 * 5 3 2 7 7 C 1.53006 * 109.47023 * 176.13798 * 6 5 3 8 8 C 1.52999 * 109.47064 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.47007 * 179.97438 * 8 7 6 10 10 H 1.08000 * 120.00282 * 0.02562 * 9 8 7 11 11 C 1.37885 * 119.99972 * 179.97438 * 9 8 7 12 12 N 1.31510 * 119.99881 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99972 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.46965 * 90.00186 * 13 11 9 15 15 H 1.48501 * 109.46878 * 209.99989 * 13 11 9 16 16 H 1.48505 * 109.47087 * 330.00250 * 13 11 9 17 17 C 1.53004 * 109.46772 * 62.65418 * 3 2 1 18 18 C 1.50698 * 112.85140 * 54.57766 * 17 3 2 19 19 O 1.20819 * 119.99987 * 7.17057 * 18 17 3 20 20 O 1.34225 * 119.99896 * 187.16387 * 18 17 3 21 21 C 1.45204 * 116.99683 * 179.97438 * 20 18 17 22 22 C 1.53785 * 113.61494 * 283.26948 * 17 3 2 23 23 C 1.53782 * 87.08321 * 220.02039 * 22 17 3 24 24 C 1.53785 * 87.08156 * 25.43264 * 23 22 17 25 25 H 1.09000 * 109.46779 * 292.17785 * 1 2 3 26 26 H 1.08998 * 109.46935 * 52.17666 * 1 2 3 27 27 H 1.08996 * 109.46827 * 172.17605 * 1 2 3 28 28 H 1.08997 * 109.47601 * 240.00250 * 2 1 3 29 29 H 1.08997 * 109.47489 * 120.00173 * 2 1 3 30 30 H 1.00898 * 110.99876 * 39.36921 * 5 3 2 31 31 H 1.09006 * 109.46905 * 296.13056 * 6 5 3 32 32 H 1.09000 * 109.47579 * 56.13641 * 6 5 3 33 33 H 1.08998 * 109.47007 * 299.99946 * 7 6 5 34 34 H 1.08998 * 109.47318 * 60.00014 * 7 6 5 35 35 H 1.08998 * 109.47499 * 300.00054 * 8 7 6 36 36 H 1.09000 * 109.47225 * 60.00034 * 8 7 6 37 37 H 0.97003 * 120.00130 * 180.02562 * 12 11 9 38 38 H 1.09000 * 109.46741 * 180.02562 * 21 20 18 39 39 H 1.08994 * 109.47180 * 300.00240 * 21 20 18 40 40 H 1.08996 * 109.47201 * 60.00948 * 21 20 18 41 41 H 1.08998 * 113.61257 * 334.56734 * 22 17 3 42 42 H 1.08999 * 113.61141 * 105.47116 * 22 17 3 43 43 H 1.09000 * 113.61704 * 270.88950 * 23 22 17 44 44 H 1.08994 * 113.61526 * 139.97820 * 23 22 17 45 45 H 1.08994 * 113.61597 * 220.02324 * 24 23 22 46 46 H 1.09000 * 113.61332 * 89.11505 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1290 1.4430 -0.0475 5 7 1.4987 2.1533 -1.1661 6 6 2.3258 1.9175 -2.3569 7 6 1.6797 2.5927 -3.5684 8 6 2.5414 2.3477 -4.8086 9 6 1.9047 3.0121 -6.0020 10 1 0.9783 3.5552 -5.8873 11 6 2.5055 2.9276 -7.2402 12 7 3.6339 2.2667 -7.3798 13 14 1.7166 3.7518 -8.7193 14 1 2.2267 5.1410 -8.8423 15 1 2.0537 2.9900 -9.9487 16 1 0.2424 3.7795 -8.5427 17 6 1.5853 2.1442 1.2814 18 6 1.9899 1.4031 2.5296 19 8 2.7166 0.4409 2.4521 20 8 1.5430 1.8119 3.7274 21 6 1.9729 1.0501 4.8864 22 6 0.1054 2.5618 1.2630 23 6 0.5450 3.8621 1.9564 24 6 1.9265 3.6433 1.3171 25 1 -0.3633 0.3879 0.9517 26 1 -0.3633 0.6302 -0.8117 27 1 -0.3633 -1.0181 -0.1399 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8899 30 1 0.5388 1.8923 -1.3350 31 1 3.3204 2.3337 -2.1966 32 1 2.4052 0.8456 -2.5378 33 1 0.6850 2.1766 -3.7287 34 1 1.6003 3.6646 -3.3876 35 1 3.5359 2.7640 -4.6482 36 1 2.6212 1.2758 -4.9897 37 1 4.0567 2.2075 -8.2508 38 1 1.5411 1.4853 5.7877 39 1 1.6395 0.0173 4.7864 40 1 3.0604 1.0759 4.9552 41 1 -0.2927 2.7149 0.2599 42 1 -0.5338 1.9317 1.8816 43 1 0.5521 3.7960 3.0444 44 1 0.0293 4.7490 1.5885 45 1 2.7574 3.8862 1.9793 46 1 2.0262 4.0921 0.3288 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353538732.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:18 Heat of formation + Delta-G solvation = -75.390572 kcal Electronic energy + Delta-G solvation = -23382.082761 eV Core-core repulsion = 20079.260803 eV Total energy + Delta-G solvation = -3302.821958 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.45328 -39.03684 -36.82706 -36.21744 -33.98441 -32.35488 -30.33509 -28.60730 -27.76609 -25.91611 -25.73560 -24.36363 -22.89088 -21.89171 -20.31766 -20.08606 -19.23919 -17.50609 -16.61661 -16.57162 -16.29945 -15.66320 -15.29924 -14.84381 -14.54063 -14.33456 -13.91803 -13.74662 -13.44047 -13.30365 -12.92852 -12.43749 -12.35627 -12.16217 -12.04463 -11.88872 -11.75402 -11.51931 -11.25024 -11.08049 -10.92805 -10.83917 -10.65682 -10.54820 -10.53422 -10.24400 -10.15434 -10.07581 -9.67560 -9.31722 -9.03249 -8.32331 -8.14659 -5.97413 -3.99502 1.99993 2.46316 3.33682 3.39730 3.43110 4.25720 4.38794 4.44002 4.49843 4.58867 4.77254 4.82679 4.90436 4.94798 5.08737 5.15599 5.21944 5.30731 5.38406 5.41766 5.62588 5.71297 5.74904 5.77502 5.88452 5.88838 5.93161 5.97441 6.02015 6.07147 6.11257 6.22547 6.32557 6.36637 6.47828 6.74228 6.79955 7.15330 7.33148 7.59861 7.65102 7.71147 7.86252 8.03185 8.46143 9.07858 9.64384 11.14032 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.033178 B = 0.003092 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.727449 B = 9052.983299 C = 9287.244413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.167 4.167 3 C 0.116 3.884 4 H 0.084 0.916 5 N -0.682 5.682 6 C 0.060 3.940 7 C -0.107 4.107 8 C 0.022 3.978 9 C -0.518 4.518 10 H 0.055 0.945 11 C 0.055 3.945 12 N -0.896 5.896 13 Si 0.892 3.108 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.274 1.274 17 C -0.078 4.078 18 C 0.487 3.513 19 O -0.501 6.501 20 O -0.353 6.353 21 C 0.033 3.967 22 C -0.111 4.111 23 C -0.144 4.144 24 C -0.107 4.107 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.340 0.660 31 H 0.067 0.933 32 H 0.027 0.973 33 H 0.044 0.956 34 H 0.056 0.944 35 H 0.016 0.984 36 H 0.013 0.987 37 H 0.260 0.740 38 H 0.100 0.900 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.103 0.897 42 H 0.067 0.933 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.061 0.939 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.288 -1.132 24.292 25.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.206 4.206 3 C 0.005 3.995 4 H 0.102 0.898 5 N -0.315 5.315 6 C -0.068 4.068 7 C -0.145 4.145 8 C -0.015 4.015 9 C -0.557 4.557 10 H 0.073 0.927 11 C -0.145 4.145 12 N -0.536 5.536 13 Si 0.720 3.280 14 H -0.207 1.207 15 H -0.213 1.213 16 H -0.199 1.199 17 C -0.080 4.080 18 C 0.330 3.670 19 O -0.388 6.388 20 O -0.270 6.270 21 C -0.061 4.061 22 C -0.149 4.149 23 C -0.181 4.181 24 C -0.145 4.145 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.102 0.898 30 H 0.161 0.839 31 H 0.086 0.914 32 H 0.045 0.955 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.034 0.966 36 H 0.032 0.968 37 H 0.070 0.930 38 H 0.118 0.882 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.121 0.879 42 H 0.086 0.914 43 H 0.104 0.896 44 H 0.090 0.910 45 H 0.080 0.920 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.630 -0.889 24.311 24.970 hybrid contribution -0.360 -0.832 -0.959 1.320 sum -5.991 -1.721 23.352 24.169 Atomic orbital electron populations 1.22003 0.96112 1.01657 1.01920 1.22349 0.96286 0.98171 1.03758 1.21038 0.99590 0.90279 0.88602 0.89791 1.60642 1.06590 1.60144 1.04171 1.22151 0.97136 0.98371 0.89190 1.21629 0.99085 0.99657 0.94113 1.19054 0.94880 0.96883 0.90708 1.21257 1.08162 1.33068 0.93192 0.92693 1.25034 0.95002 0.95503 0.99006 1.69967 1.17726 1.41993 1.23904 0.86602 0.79674 0.79459 0.82313 1.20662 1.21282 1.19899 1.21659 1.00369 0.96632 0.89336 1.23172 0.77014 0.82246 0.84611 1.90612 1.34447 1.26843 1.86945 1.86534 1.68538 1.56149 1.15733 1.23261 1.00865 0.96385 0.85562 1.22976 0.92615 0.96949 1.02326 1.22943 0.96763 0.98015 1.00357 1.22876 0.97316 0.91180 1.03106 0.92312 0.92330 0.92889 0.91681 0.89808 0.83858 0.91409 0.95501 0.93753 0.92532 0.96576 0.96837 0.93049 0.88179 0.92014 0.91960 0.87862 0.91408 0.89591 0.90971 0.91989 0.86798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 8.55 37.16 0.32 -1.42 16 2 C -0.17 -2.12 5.46 -26.73 -0.15 -2.26 16 3 C 0.12 1.49 1.89 -67.71 -0.13 1.36 16 4 H 0.08 1.22 7.85 -51.93 -0.41 0.81 16 5 N -0.68 -9.34 4.71 -106.72 -0.50 -9.85 16 6 C 0.06 1.01 5.48 -3.82 -0.02 0.99 16 7 C -0.11 -2.17 5.37 -26.73 -0.14 -2.31 16 8 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 9 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 10 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 11 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 12 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 13 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 16 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 17 C -0.08 -0.88 0.75 -154.84 -0.12 -0.99 16 18 C 0.49 5.83 6.72 36.00 0.24 6.08 16 19 O -0.50 -7.16 13.81 -18.74 -0.26 -7.42 16 20 O -0.35 -3.56 8.67 -39.24 -0.34 -3.90 16 21 C 0.03 0.24 10.56 101.05 1.07 1.31 16 22 C -0.11 -1.08 4.70 -25.92 -0.12 -1.20 16 23 C -0.14 -1.31 7.64 -25.92 -0.20 -1.51 16 24 C -0.11 -1.14 7.09 -25.91 -0.18 -1.32 16 25 H 0.06 0.59 5.30 -51.93 -0.27 0.31 16 26 H 0.06 0.63 5.73 -51.93 -0.30 0.33 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.89 7.43 -51.93 -0.39 0.50 16 29 H 0.08 1.15 5.56 -51.93 -0.29 0.86 16 30 H 0.34 4.41 4.88 -39.29 -0.19 4.22 16 31 H 0.07 1.19 8.13 -51.93 -0.42 0.76 16 32 H 0.03 0.47 7.37 -51.93 -0.38 0.09 16 33 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 40 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 41 H 0.10 1.02 6.16 -51.93 -0.32 0.70 16 42 H 0.07 0.62 6.91 -51.93 -0.36 0.26 16 43 H 0.09 0.76 6.87 -51.93 -0.36 0.40 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 46 H 0.11 1.34 7.48 -51.93 -0.39 0.95 16 LS Contribution 352.18 15.07 5.31 5.31 Total: -1.00 -30.98 352.18 -7.90 -38.89 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -7.84 Total: 1.12 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: 0.02 Total: -14.43 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.23 Total: -36.37 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: -0.60 Total: -11.32 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.98 -7.90 -38.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353538732.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.505 kcal (2) G-P(sol) polarization free energy of solvation -30.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds