Wall clock time and date at job start Tue Mar 31 2020 07:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46941 * 2 1 4 4 H 1.09001 * 109.47698 * 306.07725 * 3 2 1 5 5 N 1.46900 * 109.47307 * 186.07449 * 3 2 1 6 6 C 1.46898 * 111.00086 * 88.55182 * 5 3 2 7 7 C 1.52994 * 109.47102 * 184.72932 * 6 5 3 8 8 C 1.53004 * 109.46916 * 180.02562 * 7 6 5 9 9 C 1.50704 * 109.47147 * 180.02562 * 8 7 6 10 10 H 1.07997 * 119.99828 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00211 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99837 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00124 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46678 * 60.00523 * 13 11 9 15 15 H 1.48499 * 109.47080 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47194 * 300.00174 * 13 11 9 17 17 C 1.53002 * 109.47032 * 66.07570 * 3 2 1 18 18 C 1.50703 * 112.84803 * 55.00234 * 17 3 2 19 19 O 1.20827 * 120.00025 * 7.86745 * 18 17 3 20 20 O 1.34231 * 119.99787 * 187.86136 * 18 17 3 21 21 C 1.45199 * 116.99875 * 180.02562 * 20 18 17 22 22 C 1.53778 * 113.61551 * 283.70092 * 17 3 2 23 23 C 1.53782 * 87.08151 * 220.01746 * 22 17 3 24 24 C 1.53780 * 87.08244 * 25.42974 * 23 22 17 25 25 H 1.08992 * 109.47360 * 52.40191 * 1 2 3 26 26 H 1.09002 * 109.47131 * 292.39772 * 1 2 3 27 27 H 1.08999 * 109.46757 * 172.40570 * 1 2 3 28 28 H 1.09000 * 109.47362 * 120.00375 * 2 1 3 29 29 H 1.09003 * 109.47051 * 240.00711 * 2 1 3 30 30 H 1.00898 * 110.99707 * 324.59998 * 5 3 2 31 31 H 1.08998 * 109.47223 * 304.73572 * 6 5 3 32 32 H 1.09005 * 109.46721 * 64.72666 * 6 5 3 33 33 H 1.08997 * 109.47507 * 299.99860 * 7 6 5 34 34 H 1.08996 * 109.47596 * 60.00524 * 7 6 5 35 35 H 1.09000 * 109.47281 * 299.99563 * 8 7 6 36 36 H 1.09004 * 109.47127 * 60.00238 * 8 7 6 37 37 H 0.97002 * 119.99948 * 180.02562 * 12 11 9 38 38 H 1.09002 * 109.46840 * 299.99705 * 21 20 18 39 39 H 1.09002 * 109.47430 * 59.99885 * 21 20 18 40 40 H 1.08999 * 109.47258 * 180.02562 * 21 20 18 41 41 H 1.09003 * 113.61337 * 334.56383 * 22 17 3 42 42 H 1.08997 * 113.61676 * 105.46744 * 22 17 3 43 43 H 1.08995 * 113.61143 * 270.87907 * 23 22 17 44 44 H 1.09000 * 113.68803 * 139.99350 * 23 22 17 45 45 H 1.08996 * 113.61637 * 220.01900 * 24 23 22 46 46 H 1.09004 * 113.61175 * 89.11339 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5906 1.9869 -0.8306 5 7 3.5017 1.4452 -0.1466 6 6 3.8886 1.4599 -1.5636 7 6 5.4098 1.3434 -1.6780 8 6 5.8129 1.3593 -3.1539 9 6 7.3113 1.2439 -3.2667 10 1 7.9156 1.1673 -2.3750 11 6 7.9106 1.2361 -4.5084 12 7 7.1747 1.3299 -5.5943 13 14 9.7679 1.0937 -4.6482 14 1 10.2150 -0.1784 -4.0261 15 1 10.1591 1.1091 -6.0806 16 1 10.4061 2.2379 -3.9490 17 6 1.6584 2.1183 1.3186 18 6 2.1411 1.3580 2.5269 19 8 2.8777 0.4101 2.3897 20 8 1.7529 1.7341 3.7556 21 6 2.2572 0.9562 4.8731 22 6 0.1777 2.5259 1.3960 23 6 0.6503 3.8167 2.0853 24 6 1.9924 3.6189 1.3611 25 1 -0.3633 0.6269 -0.8142 26 1 -0.3633 0.3916 0.9502 27 1 -0.3633 -1.0187 -0.1358 28 1 1.8934 -0.5139 0.8899 29 1 1.8934 -0.5137 -0.8901 30 1 3.9145 0.6593 0.3329 31 1 3.4202 0.6202 -2.0769 32 1 3.5603 2.3936 -2.0202 33 1 5.8783 2.1831 -1.1648 34 1 5.7382 0.4096 -1.2215 35 1 5.3446 0.5197 -3.6676 36 1 5.4847 2.2933 -3.6101 37 1 7.5963 1.3240 -6.4679 38 1 1.9359 -0.0802 4.7688 39 1 3.3463 0.9996 4.8840 40 1 1.8677 1.3648 5.8055 41 1 -0.2805 2.6939 0.4213 42 1 -0.4197 1.8806 2.0400 43 1 0.7225 3.7314 3.1695 44 1 0.1089 4.7072 1.7659 45 1 2.8599 3.8559 1.9768 46 1 2.0303 4.0857 0.3768 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353538733.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:22 Heat of formation + Delta-G solvation = -83.950470 kcal Electronic energy + Delta-G solvation = -23382.297878 eV Core-core repulsion = 20079.104735 eV Total energy + Delta-G solvation = -3303.193143 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.36936 -38.79199 -36.91176 -36.00970 -33.96340 -32.53090 -30.63967 -28.43545 -27.55719 -25.88182 -25.55705 -23.98881 -22.60756 -22.22204 -20.62612 -20.07796 -19.47078 -17.42244 -16.49882 -16.41680 -16.24911 -15.44166 -15.07597 -14.86880 -14.70208 -14.33237 -13.85184 -13.58085 -13.53756 -13.20599 -12.56512 -12.42623 -12.34824 -12.25394 -12.05618 -11.88052 -11.73785 -11.54133 -11.46406 -11.18295 -10.91939 -10.83183 -10.70352 -10.56200 -10.50532 -10.33214 -10.17261 -10.01193 -9.62763 -9.26193 -9.00191 -8.29271 -7.99605 -5.94787 -3.96547 2.12179 2.57500 3.37298 3.40904 3.44143 4.17455 4.28701 4.40949 4.50874 4.68057 4.87856 4.89037 4.91123 4.99163 5.06725 5.14580 5.28800 5.32014 5.40845 5.43516 5.51268 5.61382 5.65531 5.71601 5.76169 5.87722 5.91680 5.97500 5.98690 6.02618 6.10152 6.22927 6.25942 6.40410 6.44271 6.80772 6.86723 7.20828 7.45663 7.69358 7.74118 7.84181 7.90894 8.06140 8.49898 9.10495 9.67069 11.16685 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.023710 B = 0.003304 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.670347 B = 8472.399138 C = 8774.937077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.168 4.168 3 C 0.116 3.884 4 H 0.088 0.912 5 N -0.686 5.686 6 C 0.060 3.940 7 C -0.108 4.108 8 C 0.023 3.977 9 C -0.518 4.518 10 H 0.054 0.946 11 C 0.056 3.944 12 N -0.897 5.897 13 Si 0.892 3.108 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.277 1.277 17 C -0.069 4.069 18 C 0.490 3.510 19 O -0.494 6.494 20 O -0.357 6.357 21 C 0.034 3.966 22 C -0.118 4.118 23 C -0.148 4.148 24 C -0.101 4.101 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.049 0.951 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.349 0.651 31 H 0.024 0.976 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.044 0.956 35 H 0.013 0.987 36 H 0.016 0.984 37 H 0.260 0.740 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.073 0.927 43 H 0.090 0.910 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.761 2.101 18.685 25.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.207 4.207 3 C 0.005 3.995 4 H 0.106 0.894 5 N -0.317 5.317 6 C -0.068 4.068 7 C -0.146 4.146 8 C -0.014 4.014 9 C -0.557 4.557 10 H 0.072 0.928 11 C -0.145 4.145 12 N -0.537 5.537 13 Si 0.720 3.280 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.071 4.071 18 C 0.332 3.668 19 O -0.381 6.381 20 O -0.274 6.274 21 C -0.060 4.060 22 C -0.156 4.156 23 C -0.185 4.185 24 C -0.138 4.138 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.100 0.900 29 H 0.083 0.917 30 H 0.169 0.831 31 H 0.042 0.958 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.031 0.969 36 H 0.034 0.966 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.117 0.883 41 H 0.112 0.888 42 H 0.092 0.908 43 H 0.108 0.892 44 H 0.089 0.911 45 H 0.091 0.909 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -17.430 2.487 18.551 25.576 hybrid contribution 1.010 -1.296 -0.362 1.683 sum -16.419 1.191 18.189 24.532 Atomic orbital electron populations 1.21917 0.95923 1.01451 1.01815 1.22468 0.96358 0.98202 1.03649 1.21375 0.89986 0.94425 0.93731 0.89426 1.60608 1.06499 1.50474 1.14082 1.22137 0.98054 0.99854 0.86766 1.21628 0.91722 1.00501 1.00739 1.19053 0.95990 0.97057 0.89334 1.21239 0.92455 1.49859 0.92115 0.92762 1.25024 0.98097 0.95435 0.95956 1.69960 1.35212 1.50916 0.97611 0.86659 0.85872 0.78660 0.76821 1.20283 1.21328 1.20234 1.21761 0.98221 0.96648 0.90474 1.23055 0.77580 0.82300 0.83833 1.90591 1.33593 1.27611 1.86256 1.86513 1.68321 1.56825 1.15750 1.23242 1.00199 0.95907 0.86652 1.23040 0.93242 0.97495 1.01838 1.23036 0.97033 0.97638 1.00783 1.22716 0.97786 0.91374 1.01967 0.92671 0.92410 0.93149 0.90013 0.91693 0.83090 0.95810 0.91657 0.92651 0.93738 0.96857 0.96601 0.93030 0.92110 0.91833 0.88345 0.88754 0.90826 0.89171 0.91082 0.90941 0.88564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 8.81 37.16 0.33 -1.19 16 2 C -0.17 -2.10 5.14 -26.73 -0.14 -2.23 16 3 C 0.12 1.48 1.53 -67.71 -0.10 1.37 16 4 H 0.09 1.08 7.72 -51.93 -0.40 0.68 16 5 N -0.69 -10.78 5.93 -106.73 -0.63 -11.41 16 6 C 0.06 1.09 5.47 -3.83 -0.02 1.06 16 7 C -0.11 -2.35 5.36 -26.73 -0.14 -2.49 16 8 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 9 C -0.52 -15.19 9.11 -34.44 -0.31 -15.51 16 10 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 12 N -0.90 -27.58 13.29 55.43 0.74 -26.84 16 13 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 15 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 C -0.07 -0.77 0.57 -154.85 -0.09 -0.85 16 18 C 0.49 6.09 6.62 36.01 0.24 6.33 16 19 O -0.49 -7.36 12.45 -18.75 -0.23 -7.60 16 20 O -0.36 -3.76 8.68 -39.26 -0.34 -4.10 16 21 C 0.03 0.27 10.56 101.05 1.07 1.34 16 22 C -0.12 -1.00 4.85 -25.92 -0.13 -1.13 16 23 C -0.15 -1.21 7.64 -25.92 -0.20 -1.41 16 24 C -0.10 -1.05 7.11 -25.92 -0.18 -1.23 16 25 H 0.05 0.50 8.12 -51.93 -0.42 0.08 16 26 H 0.06 0.52 5.31 -51.93 -0.28 0.24 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 1.14 5.54 -51.93 -0.29 0.85 16 29 H 0.06 0.89 7.55 -51.93 -0.39 0.49 16 30 H 0.35 5.90 6.98 -39.29 -0.27 5.62 16 31 H 0.02 0.43 7.54 -51.93 -0.39 0.04 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 38 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 39 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 40 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.09 0.71 7.87 -51.93 -0.41 0.30 16 42 H 0.07 0.59 7.05 -51.93 -0.37 0.23 16 43 H 0.09 0.76 6.88 -51.93 -0.36 0.40 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 46 H 0.10 1.00 8.10 -51.93 -0.42 0.58 16 LS Contribution 358.59 15.07 5.40 5.40 Total: -1.00 -31.76 358.59 -8.19 -39.95 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -8.18 Total: 1.31 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: 0.08 Total: -13.92 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.10 Total: -38.26 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: -0.57 Total: -11.69 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.76 -8.19 -39.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353538733.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.000 kcal (2) G-P(sol) polarization free energy of solvation -31.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds