Wall clock time and date at job start Tue Mar 31 2020 07:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47043 * 2 1 4 4 H 1.09006 * 109.46922 * 55.00480 * 3 2 1 5 5 C 1.52994 * 109.47449 * 295.00404 * 3 2 1 6 6 C 1.53001 * 109.47365 * 175.00008 * 3 2 1 7 7 H 1.09009 * 109.46542 * 63.61558 * 6 3 2 8 8 O 1.42898 * 109.47143 * 303.61957 * 6 3 2 9 9 C 1.42908 * 114.00125 * 149.99595 * 8 6 3 10 10 C 1.50695 * 109.47361 * 183.61629 * 6 3 2 11 11 O 1.21272 * 120.00228 * 83.69411 * 10 6 3 12 12 N 1.34785 * 119.99941 * 263.69039 * 10 6 3 13 13 C 1.46499 * 119.99768 * 4.47076 * 12 10 6 14 14 C 1.50698 * 109.47143 * 269.45394 * 13 12 10 15 15 H 1.07996 * 120.00032 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99744 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00226 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99718 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46883 * 60.00589 * 18 16 14 20 20 H 1.48496 * 109.47227 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47418 * 300.00548 * 18 16 14 22 22 C 1.46495 * 120.00034 * 184.46476 * 12 10 6 23 23 C 1.53006 * 109.46743 * 90.13525 * 22 12 10 24 24 C 1.53006 * 117.49440 * 244.04682 * 23 22 12 25 25 C 1.52999 * 117.49509 * 175.38845 * 23 22 12 26 26 H 1.09005 * 109.46948 * 299.99471 * 1 2 3 27 27 H 1.08996 * 109.47205 * 59.99561 * 1 2 3 28 28 H 1.08998 * 109.46703 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46948 * 240.00529 * 2 1 3 30 30 H 1.08998 * 109.47692 * 120.00587 * 2 1 3 31 31 H 1.08996 * 109.47052 * 67.25100 * 5 3 2 32 32 H 1.09003 * 109.47110 * 187.24877 * 5 3 2 33 33 H 1.08998 * 109.47482 * 307.24756 * 5 3 2 34 34 H 1.09004 * 109.46769 * 59.99567 * 9 8 6 35 35 H 1.08997 * 109.47190 * 179.97438 * 9 8 6 36 36 H 1.08993 * 109.46975 * 300.00015 * 9 8 6 37 37 H 1.09003 * 109.47486 * 29.45900 * 13 12 10 38 38 H 1.09000 * 109.46922 * 149.45158 * 13 12 10 39 39 H 0.97004 * 120.00035 * 179.97438 * 17 16 14 40 40 H 1.09002 * 109.47234 * 330.13808 * 22 12 10 41 41 H 1.08996 * 109.47159 * 210.12999 * 22 12 10 42 42 H 1.08994 * 115.55084 * 29.71348 * 23 22 12 43 43 H 1.08990 * 117.49960 * 359.97438 * 24 23 22 44 44 H 1.08996 * 117.49539 * 145.02400 * 24 23 22 45 45 H 1.09006 * 117.49396 * 214.97391 * 25 23 22 46 46 H 1.08998 * 117.50319 * 0.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3072 6 6 3.5648 1.4444 0.1257 7 1 4.0020 0.9616 -0.7484 8 8 3.9465 0.7320 1.3042 9 6 5.2191 0.0890 1.2081 10 6 4.0597 2.8650 0.2151 11 8 4.0647 3.4393 1.2831 12 7 4.4970 3.4971 -0.8921 13 6 4.4002 2.8394 -2.1975 14 6 5.6633 2.0615 -2.4629 15 1 6.4584 2.0570 -1.7321 16 6 5.8034 1.3545 -3.6384 17 7 4.8350 1.3594 -4.5281 18 14 7.3693 0.3907 -3.9676 19 1 7.5516 -0.6342 -2.9086 20 1 7.2712 -0.2761 -5.2908 21 1 8.5303 1.3168 -3.9653 22 6 5.0689 4.8420 -0.7900 23 6 6.5790 4.7384 -0.5668 24 6 7.1354 5.2678 0.7566 25 6 7.3804 6.0414 -0.5414 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 0.5516 2.2408 -1.3371 32 1 2.1056 3.1082 -1.3645 33 1 1.9599 1.5183 -2.1514 34 1 5.9903 0.8361 1.0199 35 1 5.4359 -0.4290 2.1423 36 1 5.2021 -0.6298 0.3891 37 1 3.5478 2.1601 -2.1999 38 1 4.2670 3.5921 -2.9746 39 1 4.9337 0.8623 -5.3552 40 1 4.6129 5.3681 0.0487 41 1 4.8747 5.3903 -1.7118 42 1 7.0590 3.8606 -0.9993 43 1 6.4258 5.6903 1.4678 44 1 7.9818 4.7386 1.1943 45 1 8.3879 6.0208 -0.9570 46 1 6.8318 6.9726 -0.6834 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355664294.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:31 Heat of formation + Delta-G solvation = -68.538021 kcal Electronic energy + Delta-G solvation = -24579.574817 eV Core-core repulsion = 21277.050008 eV Total energy + Delta-G solvation = -3302.524809 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.79990 -37.53081 -36.39848 -35.49401 -34.57320 -32.50875 -30.28679 -27.81156 -27.42834 -26.37315 -24.99760 -23.54367 -22.76069 -21.95806 -20.41060 -19.75673 -18.40676 -16.86032 -16.74670 -16.00457 -15.54777 -15.26854 -14.57920 -14.52284 -14.28136 -14.07793 -13.82917 -13.36050 -13.10481 -12.85462 -12.38382 -12.26022 -12.06982 -11.87464 -11.74387 -11.55320 -11.24234 -11.21479 -11.15426 -11.06835 -10.92430 -10.77946 -10.46515 -10.36320 -10.25953 -9.95785 -9.89285 -9.86299 -9.57102 -9.45147 -8.65086 -8.43229 -7.70750 -6.22794 -4.29666 3.18601 3.24685 3.25395 3.34541 3.79488 4.20878 4.26373 4.37817 5.08886 5.12114 5.18906 5.25217 5.32391 5.37455 5.45559 5.57698 5.68757 5.78871 5.81944 5.86059 5.87925 5.94107 5.96099 6.03025 6.08807 6.10812 6.16706 6.20280 6.26216 6.27231 6.34486 6.39918 6.44780 6.46589 6.69186 6.71193 6.77802 6.89953 7.18571 7.44124 7.61586 7.72728 8.02307 8.34562 8.75263 9.04995 9.37829 10.83417 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.010719 B = 0.008263 C = 0.005922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.609672 B = 3387.968732 C = 4727.260003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.076 4.076 4 H 0.075 0.925 5 C -0.155 4.155 6 C 0.074 3.926 7 H 0.105 0.895 8 O -0.366 6.366 9 C 0.032 3.968 10 C 0.500 3.500 11 O -0.558 6.558 12 N -0.593 5.593 13 C 0.218 3.782 14 C -0.538 4.538 15 H 0.060 0.940 16 C 0.067 3.933 17 N -0.888 5.888 18 Si 0.891 3.109 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.276 1.276 22 C 0.152 3.848 23 C -0.155 4.155 24 C -0.179 4.179 25 C -0.183 4.183 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.041 0.959 35 H 0.080 0.920 36 H 0.045 0.955 37 H 0.059 0.941 38 H 0.035 0.965 39 H 0.266 0.734 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.117 0.883 43 H 0.091 0.909 44 H 0.085 0.915 45 H 0.089 0.911 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.787 0.574 5.310 6.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.095 4.095 4 H 0.093 0.907 5 C -0.212 4.212 6 C 0.013 3.987 7 H 0.123 0.877 8 O -0.283 6.283 9 C -0.065 4.065 10 C 0.287 3.713 11 O -0.437 6.437 12 N -0.325 5.325 13 C 0.099 3.901 14 C -0.576 4.576 15 H 0.078 0.922 16 C -0.136 4.136 17 N -0.526 5.526 18 Si 0.718 3.282 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.202 1.202 22 C 0.028 3.972 23 C -0.174 4.174 24 C -0.216 4.216 25 C -0.220 4.220 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.098 0.902 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.053 0.947 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.135 0.865 43 H 0.110 0.890 44 H 0.103 0.897 45 H 0.107 0.893 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.970 0.783 5.824 6.584 hybrid contribution 1.404 -0.536 -0.671 1.646 sum -1.566 0.248 5.153 5.391 Atomic orbital electron populations 1.21794 0.96150 1.01102 1.01675 1.21497 0.95376 0.95821 1.02589 1.21074 0.91910 0.97427 0.99117 0.90696 1.22135 1.00871 1.01399 0.96808 1.22297 0.96163 0.90216 0.89977 0.87704 1.87862 1.35759 1.67625 1.37073 1.22776 0.85603 0.96540 1.01557 1.21103 0.77575 0.88947 0.83673 1.90571 1.56765 1.67571 1.28822 1.48270 1.58682 1.16134 1.09374 1.19892 0.98491 0.93580 0.78142 1.21480 1.02387 1.30200 1.03577 0.92234 1.24908 0.96513 0.96372 0.95804 1.69893 1.32115 1.41739 1.08883 0.86669 0.83657 0.80247 0.77613 1.20122 1.21092 1.20161 1.20815 0.90323 0.84734 1.01323 1.22911 0.96022 0.98116 1.00367 1.22949 1.03170 1.04302 0.91185 1.22886 1.01162 0.95886 1.02108 0.93045 0.92551 0.93133 0.91762 0.91234 0.92480 0.91920 0.90676 0.94033 0.90163 0.93654 0.92388 0.94709 0.92447 0.91113 0.90798 0.86502 0.89040 0.89694 0.89292 0.89257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.67 37.16 0.36 -1.49 16 2 C -0.12 -1.70 5.30 -26.73 -0.14 -1.84 16 3 C -0.08 -1.29 2.16 -90.62 -0.20 -1.49 16 4 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 5 C -0.16 -2.55 7.21 37.15 0.27 -2.28 16 6 C 0.07 1.45 1.70 -27.88 -0.05 1.41 16 7 H 0.11 2.20 5.61 -51.92 -0.29 1.91 16 8 O -0.37 -7.07 9.21 -51.87 -0.48 -7.54 16 9 C 0.03 0.54 10.81 101.05 1.09 1.63 16 10 C 0.50 10.72 5.94 -10.98 -0.07 10.65 16 11 O -0.56 -13.25 16.38 -11.07 -0.18 -13.43 16 12 N -0.59 -12.33 2.10 -175.06 -0.37 -12.70 16 13 C 0.22 4.92 3.90 -5.20 -0.02 4.90 16 14 C -0.54 -13.23 8.37 -34.44 -0.29 -13.52 16 15 H 0.06 1.50 6.61 -52.49 -0.35 1.15 16 16 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -23.30 13.29 55.43 0.74 -22.56 16 18 Si 0.89 19.89 29.54 -169.99 -5.02 14.87 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 22 C 0.15 2.86 5.77 -4.04 -0.02 2.83 16 23 C -0.16 -2.81 6.01 -90.61 -0.54 -3.36 16 24 C -0.18 -2.89 10.18 -26.69 -0.27 -3.16 16 25 C -0.18 -2.72 10.25 -26.69 -0.27 -2.99 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.67 6.73 -51.93 -0.35 0.32 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.07 1.04 7.43 -51.93 -0.39 0.66 16 31 H 0.06 0.80 6.93 -51.93 -0.36 0.44 16 32 H 0.06 1.12 5.72 -51.93 -0.30 0.82 16 33 H 0.07 1.32 6.88 -51.93 -0.36 0.96 16 34 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.04 0.73 8.08 -51.93 -0.42 0.31 16 37 H 0.06 1.30 3.11 -51.93 -0.16 1.14 16 38 H 0.03 0.84 7.90 -51.93 -0.41 0.42 16 39 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 40 H 0.07 1.33 7.10 -51.93 -0.37 0.96 16 41 H 0.07 1.30 7.90 -51.93 -0.41 0.89 16 42 H 0.12 2.40 6.51 -51.93 -0.34 2.07 16 43 H 0.09 1.49 8.03 -51.93 -0.42 1.07 16 44 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 360.71 15.07 5.44 5.44 Total: -1.00 -27.75 360.71 -7.98 -35.72 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -7.85 Total: 7.31 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -0.25 Total: -7.10 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: 0.37 Total: -35.26 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.66 Total: -20.97 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -27.75 -7.98 -35.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355664294.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.813 kcal (2) G-P(sol) polarization free energy of solvation -27.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds