Wall clock time and date at job start Tue Mar 31 2020 07:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47213 * 2 1 4 4 H 1.09001 * 109.47191 * 305.57647 * 3 2 1 5 5 C 1.53000 * 109.46982 * 65.58487 * 3 2 1 6 6 C 1.53007 * 109.47049 * 185.58023 * 3 2 1 7 7 H 1.08998 * 109.47112 * 185.44732 * 6 3 2 8 8 O 1.42899 * 109.47057 * 305.44656 * 6 3 2 9 9 C 1.42896 * 113.99815 * 250.05647 * 8 6 3 10 10 C 1.50695 * 109.47124 * 65.44357 * 6 3 2 11 11 O 1.21283 * 120.00172 * 254.63546 * 10 6 3 12 12 N 1.34782 * 119.99907 * 74.63716 * 10 6 3 13 13 C 1.46505 * 119.99764 * 185.26926 * 12 10 6 14 14 C 1.50696 * 109.47170 * 90.00374 * 13 12 10 15 15 H 1.07998 * 120.00277 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00146 * 180.02562 * 14 13 12 17 17 N 1.31518 * 120.00078 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00453 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46757 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.46975 * 119.99554 * 18 16 14 21 21 H 1.48500 * 109.47308 * 239.99829 * 18 16 14 22 22 C 1.46497 * 119.99733 * 5.26596 * 12 10 6 23 23 C 1.53002 * 109.46855 * 95.62938 * 22 12 10 24 24 C 1.53002 * 117.49688 * 243.74269 * 23 22 12 25 25 C 1.52998 * 117.49687 * 175.08410 * 23 22 12 26 26 H 1.09006 * 109.46606 * 299.99700 * 1 2 3 27 27 H 1.08996 * 109.47295 * 59.99382 * 1 2 3 28 28 H 1.08996 * 109.47070 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46606 * 240.00299 * 2 1 3 30 30 H 1.08996 * 109.47295 * 120.00618 * 2 1 3 31 31 H 1.09005 * 109.46379 * 296.39394 * 5 3 2 32 32 H 1.09000 * 109.47315 * 56.39498 * 5 3 2 33 33 H 1.08997 * 109.46829 * 176.40209 * 5 3 2 34 34 H 1.09008 * 109.47408 * 184.25686 * 9 8 6 35 35 H 1.09001 * 109.47554 * 304.25590 * 9 8 6 36 36 H 1.09000 * 109.47564 * 64.26214 * 9 8 6 37 37 H 1.09002 * 109.46551 * 209.99847 * 13 12 10 38 38 H 1.08998 * 109.47147 * 329.99993 * 13 12 10 39 39 H 0.96994 * 120.00663 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.46750 * 215.62478 * 22 12 10 41 41 H 1.08993 * 109.47173 * 335.62836 * 22 12 10 42 42 H 1.08999 * 115.54936 * 29.41500 * 23 22 12 43 43 H 1.09001 * 117.49968 * 0.02562 * 24 23 22 44 44 H 1.09004 * 117.49646 * 145.02314 * 24 23 22 45 45 H 1.09003 * 117.49653 * 214.97642 * 25 23 22 46 46 H 1.08998 * 117.50225 * 0.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5975 1.9844 -0.8358 5 6 1.6479 2.1221 1.3135 6 6 3.5637 1.4447 -0.1403 7 1 3.9359 2.4646 -0.0433 8 8 4.1374 0.6289 0.8831 9 6 4.8446 1.3638 1.8840 10 6 3.9445 0.8972 -1.4916 11 8 4.4040 -0.2213 -1.5852 12 7 3.7745 1.6505 -2.5962 13 6 4.0353 1.0791 -3.9198 14 6 2.7719 0.4570 -4.4562 15 1 1.8654 0.4840 -3.8697 16 6 2.7734 -0.1478 -5.6952 17 7 3.8774 -0.1813 -6.4092 18 14 1.2076 -0.9197 -6.3598 19 1 0.1133 -0.7496 -5.3704 20 1 0.8309 -0.2564 -7.6340 21 1 1.4337 -2.3670 -6.6032 22 6 3.3288 3.0407 -2.4733 23 6 4.5448 3.9692 -2.4879 24 6 4.8213 4.7910 -1.2272 25 6 4.2827 5.4765 -2.4855 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 0.5615 2.1777 1.3835 32 1 2.0369 1.5442 2.1519 33 1 2.0657 3.1284 1.3408 34 1 5.3132 0.6695 2.5815 35 1 5.6119 1.9766 1.4108 36 1 4.1483 2.0059 2.4234 37 1 4.3681 1.8664 -4.5962 38 1 4.8103 0.3168 -3.8401 39 1 3.8784 -0.6064 -7.2811 40 1 2.6734 3.2872 -3.3086 41 1 2.7865 3.1668 -1.5363 42 1 5.4048 3.6087 -3.0524 43 1 4.1371 4.6699 -0.3874 44 1 5.8631 4.9716 -0.9626 45 1 4.9705 6.1078 -3.0481 46 1 3.2440 5.8068 -2.4731 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355664295.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:35 Heat of formation + Delta-G solvation = -68.265713 kcal Electronic energy + Delta-G solvation = -24431.430861 eV Core-core repulsion = 21128.917860 eV Total energy + Delta-G solvation = -3302.513001 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.91982 -37.70715 -36.93998 -35.28828 -34.32338 -32.51868 -30.12578 -28.46538 -27.55088 -26.27786 -25.38227 -23.68463 -22.41274 -22.32145 -20.80196 -19.83760 -18.69251 -16.86089 -16.43340 -16.38823 -15.63557 -15.05718 -15.02210 -14.74320 -14.29475 -14.24866 -13.94242 -13.57505 -13.19984 -13.05919 -12.46436 -12.45879 -12.11807 -12.02003 -11.91570 -11.64200 -11.49200 -11.35928 -11.25778 -11.15199 -10.87832 -10.80588 -10.60727 -10.37917 -10.36321 -10.28225 -10.07577 -9.84726 -9.65082 -9.56213 -8.54702 -8.41687 -7.63828 -6.02370 -4.06848 3.30758 3.37224 3.39823 3.44171 3.54564 3.88123 4.26797 4.47086 4.79610 4.89425 4.93093 4.99515 5.02798 5.17991 5.26190 5.31222 5.34016 5.40020 5.44481 5.50284 5.63845 5.65782 5.68813 5.70722 5.71381 5.81630 5.85513 5.96434 6.03459 6.07422 6.12951 6.15421 6.18012 6.38576 6.44689 6.59841 6.74858 7.02531 7.29862 7.48550 7.59049 7.94971 8.25893 8.44239 8.93329 9.14341 9.58354 11.05808 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.012889 B = 0.006752 C = 0.005403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.848546 B = 4145.897890 C = 5181.334891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.101 4.101 4 H 0.085 0.915 5 C -0.146 4.146 6 C 0.075 3.925 7 H 0.079 0.921 8 O -0.353 6.353 9 C 0.027 3.973 10 C 0.505 3.495 11 O -0.522 6.522 12 N -0.594 5.594 13 C 0.246 3.754 14 C -0.524 4.524 15 H 0.058 0.942 16 C 0.061 3.939 17 N -0.894 5.894 18 Si 0.895 3.105 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.283 1.283 22 C 0.136 3.864 23 C -0.165 4.165 24 C -0.188 4.188 25 C -0.174 4.174 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.049 0.951 34 H 0.084 0.916 35 H 0.039 0.961 36 H 0.040 0.960 37 H 0.032 0.968 38 H 0.044 0.956 39 H 0.262 0.738 40 H 0.087 0.913 41 H 0.070 0.930 42 H 0.110 0.890 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.092 0.908 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.425 10.738 14.557 18.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.120 4.120 4 H 0.103 0.897 5 C -0.203 4.203 6 C 0.013 3.987 7 H 0.097 0.903 8 O -0.270 6.270 9 C -0.070 4.070 10 C 0.291 3.709 11 O -0.397 6.397 12 N -0.327 5.327 13 C 0.128 3.872 14 C -0.563 4.563 15 H 0.077 0.923 16 C -0.141 4.141 17 N -0.534 5.534 18 Si 0.723 3.277 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.209 1.209 22 C 0.011 3.989 23 C -0.184 4.184 24 C -0.225 4.225 25 C -0.212 4.212 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.103 0.897 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.050 0.950 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.105 0.895 41 H 0.088 0.912 42 H 0.128 0.872 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.111 0.889 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.116 9.837 14.324 17.505 hybrid contribution -0.697 0.011 -0.513 0.866 sum -2.813 9.848 13.811 17.194 Atomic orbital electron populations 1.21807 0.96279 1.01411 1.01218 1.21443 0.95022 0.95258 1.03553 1.21549 0.93057 0.98433 0.98911 0.89683 1.21892 1.01578 0.99538 0.97282 1.22211 0.94090 0.94474 0.87925 0.90303 1.88028 1.70930 1.32474 1.35605 1.22898 0.95406 0.97140 0.91514 1.20305 0.79216 0.86169 0.85254 1.90671 1.43580 1.19251 1.86189 1.48143 1.65956 1.10451 1.08143 1.19277 0.97426 0.94305 0.76233 1.21470 0.96305 1.36561 1.01976 0.92342 1.24923 0.96409 0.95951 0.96770 1.69941 1.26567 1.44450 1.12399 0.86482 0.83337 0.79178 0.78682 1.19745 1.21001 1.20898 1.21141 0.93893 0.81446 1.02402 1.22950 1.01841 0.92478 1.01151 1.23052 1.01728 1.05739 0.92001 1.22901 1.02058 0.95104 1.01113 0.93126 0.92817 0.92967 0.90870 0.91392 0.92073 0.92185 0.93188 0.89709 0.94188 0.94184 0.94954 0.93819 0.92811 0.89522 0.91157 0.87229 0.89175 0.89141 0.88905 0.88721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.68 37.16 0.36 -1.68 16 2 C -0.12 -1.87 5.00 -26.73 -0.13 -2.00 16 3 C -0.10 -1.45 1.81 -90.62 -0.16 -1.61 16 4 H 0.09 1.24 6.39 -51.93 -0.33 0.91 16 5 C -0.15 -1.58 8.18 37.16 0.30 -1.28 16 6 C 0.07 1.21 1.48 -27.88 -0.04 1.17 16 7 H 0.08 1.09 5.64 -51.93 -0.29 0.80 16 8 O -0.35 -5.88 8.77 -54.70 -0.48 -6.36 16 9 C 0.03 0.32 10.49 101.05 1.06 1.38 16 10 C 0.51 10.89 5.94 -10.99 -0.07 10.83 16 11 O -0.52 -13.83 15.95 -13.92 -0.22 -14.06 16 12 N -0.59 -12.56 2.46 -175.06 -0.43 -12.99 16 13 C 0.25 6.44 5.22 -5.19 -0.03 6.42 16 14 C -0.52 -14.77 9.39 -34.44 -0.32 -15.09 16 15 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 17 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 18 Si 0.90 21.92 29.54 -169.99 -5.02 16.89 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 22 C 0.14 2.19 5.13 -4.04 -0.02 2.17 16 23 C -0.16 -2.33 6.01 -90.62 -0.54 -2.87 16 24 C -0.19 -2.09 9.69 -26.69 -0.26 -2.34 16 25 C -0.17 -1.94 10.25 -26.69 -0.27 -2.21 16 26 H 0.05 0.58 6.66 -51.93 -0.35 0.23 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 1.49 7.10 -51.93 -0.37 1.12 16 30 H 0.07 1.09 7.74 -51.93 -0.40 0.69 16 31 H 0.06 0.60 6.76 -51.93 -0.35 0.25 16 32 H 0.06 0.65 7.14 -51.93 -0.37 0.28 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 35 H 0.04 0.45 8.09 -51.93 -0.42 0.03 16 36 H 0.04 0.38 7.01 -51.93 -0.36 0.02 16 37 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 38 H 0.04 1.31 7.36 -51.93 -0.38 0.92 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.09 1.45 8.11 -51.93 -0.42 1.03 16 41 H 0.07 0.96 4.34 -51.93 -0.23 0.74 16 42 H 0.11 1.76 8.14 -51.93 -0.42 1.34 16 43 H 0.09 0.89 7.55 -51.93 -0.39 0.50 16 44 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 364.27 15.07 5.49 5.49 Total: -1.00 -33.11 364.27 -8.17 -41.27 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -8.01 Total: 1.16 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -0.23 Total: -5.46 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.31 Total: -38.93 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.70 Total: -20.42 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.11 -8.17 -41.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355664295.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.992 kcal (2) G-P(sol) polarization free energy of solvation -33.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds