Wall clock time and date at job start Tue Mar 31 2020 07:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47313 * 2 1 4 4 H 1.08996 * 109.46993 * 54.34262 * 3 2 1 5 5 C 1.53001 * 109.46971 * 294.34035 * 3 2 1 6 6 C 1.53003 * 109.47037 * 174.34064 * 3 2 1 7 7 H 1.08991 * 109.46989 * 303.24778 * 6 3 2 8 8 O 1.42900 * 109.47033 * 63.24578 * 6 3 2 9 9 C 1.42896 * 113.99964 * 258.56672 * 8 6 3 10 10 C 1.50702 * 109.46629 * 183.24422 * 6 3 2 11 11 O 1.21275 * 120.00358 * 256.33321 * 10 6 3 12 12 N 1.34774 * 119.99724 * 76.34571 * 10 6 3 13 13 C 1.46497 * 120.00337 * 4.65860 * 12 10 6 14 14 C 1.50700 * 109.47535 * 264.05352 * 13 12 10 15 15 H 1.08006 * 119.99498 * 359.97438 * 14 13 12 16 16 C 1.37869 * 120.00270 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00246 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00255 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47182 * 89.99860 * 18 16 14 20 20 H 1.48495 * 109.47388 * 210.00139 * 18 16 14 21 21 H 1.48505 * 109.46955 * 330.00159 * 18 16 14 22 22 C 1.46505 * 119.99887 * 184.94168 * 12 10 6 23 23 C 1.52994 * 109.47096 * 265.07720 * 22 12 10 24 24 C 1.53002 * 117.50193 * 244.00015 * 23 22 12 25 25 C 1.53002 * 117.49925 * 175.34006 * 23 22 12 26 26 H 1.08997 * 109.46917 * 300.00275 * 1 2 3 27 27 H 1.09000 * 109.47127 * 60.00108 * 1 2 3 28 28 H 1.09000 * 109.47136 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46772 * 240.00157 * 2 1 3 30 30 H 1.09001 * 109.47024 * 120.00435 * 2 1 3 31 31 H 1.08996 * 109.47448 * 299.99950 * 5 3 2 32 32 H 1.09004 * 109.46986 * 60.00067 * 5 3 2 33 33 H 1.09003 * 109.47104 * 179.97438 * 5 3 2 34 34 H 1.09003 * 109.46997 * 65.63447 * 9 8 6 35 35 H 1.09001 * 109.47039 * 185.63103 * 9 8 6 36 36 H 1.08994 * 109.47198 * 305.63249 * 9 8 6 37 37 H 1.08999 * 109.47087 * 24.05355 * 13 12 10 38 38 H 1.09000 * 109.47530 * 144.04952 * 13 12 10 39 39 H 0.96998 * 120.00457 * 180.02562 * 17 16 14 40 40 H 1.09003 * 109.47149 * 25.07649 * 22 12 10 41 41 H 1.09006 * 109.47214 * 145.07610 * 22 12 10 42 42 H 1.08998 * 115.55117 * 29.66978 * 23 22 12 43 43 H 1.09006 * 117.49475 * 0.02562 * 24 23 22 44 44 H 1.08991 * 117.50014 * 145.01904 * 24 23 22 45 45 H 1.09000 * 117.50051 * 214.98262 * 25 23 22 46 46 H 1.09000 * 117.49869 * 0.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5964 1.9847 0.8350 5 6 1.6495 2.1215 -1.3143 6 6 3.5635 1.4447 0.1423 7 1 3.8444 0.9104 1.0497 8 8 4.1486 0.7997 -0.9907 9 6 4.5671 -0.5439 -0.7427 10 6 4.0583 2.8660 0.2223 11 8 4.5855 3.3798 -0.7414 12 7 3.9151 3.5659 1.3651 13 6 3.3723 2.9147 2.5599 14 6 1.8934 3.1888 2.6534 15 1 1.4066 3.7886 1.8985 16 6 1.1618 2.6741 3.7025 17 7 1.7546 1.9442 4.6220 18 14 -0.6713 3.0145 3.8188 19 1 -1.4187 1.9509 3.1009 20 1 -1.0821 3.0313 5.2456 21 1 -0.9702 4.3319 3.2020 22 6 4.2966 4.9797 1.4109 23 6 5.7266 5.1051 1.9403 24 6 5.9260 5.8336 3.2709 25 6 6.3522 6.5012 1.9611 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.0932 1.5792 -2.1493 32 1 0.5642 2.1198 -1.4156 33 1 2.0125 3.1493 -1.3141 34 1 3.6945 -1.1643 -0.5381 35 1 5.0895 -0.9292 -1.6184 36 1 5.2363 -0.5631 0.1173 37 1 3.5391 1.8395 2.4952 38 1 3.8712 3.3071 3.4460 39 1 1.2398 1.5818 5.3599 40 1 4.2420 5.4034 0.4081 41 1 3.6164 5.5184 2.0706 42 1 6.3834 4.2625 1.7245 43 1 5.0382 6.2230 3.7694 44 1 6.7141 5.4703 3.9303 45 1 7.4207 6.5770 1.7593 46 1 5.7449 7.3304 1.5980 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355664296.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:39 Heat of formation + Delta-G solvation = -71.175889 kcal Electronic energy + Delta-G solvation = -24530.763747 eV Core-core repulsion = 21228.124551 eV Total energy + Delta-G solvation = -3302.639195 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.73486 -37.72520 -36.58810 -35.08006 -34.42483 -32.52123 -30.11467 -28.06920 -27.26399 -26.29335 -25.34241 -23.34886 -22.74682 -22.05075 -20.45775 -19.59410 -18.43914 -16.71940 -16.46616 -16.08751 -15.69735 -15.32815 -14.63409 -14.51790 -14.34140 -14.24740 -13.51554 -13.42971 -12.96282 -12.83890 -12.42548 -12.29346 -12.01413 -11.74298 -11.59602 -11.50812 -11.27735 -11.23689 -11.20107 -10.98362 -10.86633 -10.73142 -10.58356 -10.33303 -10.15905 -10.11064 -9.90620 -9.74699 -9.52029 -9.27700 -8.70284 -8.49277 -7.72739 -6.24059 -4.29968 3.17748 3.26142 3.28393 3.40541 3.58382 4.16256 4.26141 4.54109 5.07558 5.10749 5.20478 5.27909 5.33478 5.35988 5.41019 5.55913 5.57956 5.67357 5.76998 5.82662 5.86090 5.88065 6.02341 6.09170 6.15563 6.17909 6.19888 6.24328 6.25914 6.39749 6.47576 6.52372 6.56628 6.61770 6.65867 6.78070 6.88441 7.14016 7.15239 7.43426 7.62556 7.70648 7.99589 8.34444 8.74484 9.04763 9.36188 10.82136 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.010615 B = 0.008795 C = 0.005542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.178938 B = 3183.017787 C = 5051.114944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.112 4.112 3 C -0.119 4.119 4 H 0.130 0.870 5 C -0.136 4.136 6 C 0.085 3.915 7 H 0.084 0.916 8 O -0.363 6.363 9 C 0.026 3.974 10 C 0.515 3.485 11 O -0.554 6.554 12 N -0.592 5.592 13 C 0.235 3.765 14 C -0.535 4.535 15 H 0.064 0.936 16 C 0.070 3.930 17 N -0.886 5.886 18 Si 0.888 3.112 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.272 1.272 22 C 0.152 3.848 23 C -0.156 4.156 24 C -0.177 4.177 25 C -0.181 4.181 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.046 0.954 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.044 0.956 35 H 0.080 0.920 36 H 0.038 0.962 37 H 0.036 0.964 38 H 0.038 0.962 39 H 0.265 0.735 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.099 0.901 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.712 -1.163 -4.540 5.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.149 4.149 3 C -0.137 4.137 4 H 0.148 0.852 5 C -0.193 4.193 6 C 0.024 3.976 7 H 0.102 0.898 8 O -0.280 6.280 9 C -0.071 4.071 10 C 0.303 3.697 11 O -0.433 6.433 12 N -0.324 5.324 13 C 0.115 3.885 14 C -0.573 4.573 15 H 0.082 0.918 16 C -0.134 4.134 17 N -0.524 5.524 18 Si 0.716 3.284 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.197 1.197 22 C 0.029 3.971 23 C -0.175 4.175 24 C -0.214 4.214 25 C -0.219 4.219 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.099 0.901 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.075 0.925 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.118 0.882 43 H 0.115 0.885 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.970 -0.916 -5.033 5.915 hybrid contribution -0.997 -0.155 0.660 1.206 sum 1.972 -1.070 -4.373 4.915 Atomic orbital electron populations 1.21786 0.96075 1.00748 1.02145 1.21527 0.95922 0.96484 1.01014 1.21914 0.92633 0.97554 1.01623 0.85226 1.21694 0.99981 1.00430 0.97197 1.22056 0.94260 0.91836 0.89452 0.89798 1.87951 1.79983 1.25697 1.34418 1.22910 0.98688 0.84225 1.01241 1.20378 0.78637 0.88076 0.82648 1.90597 1.44459 1.71291 1.36965 1.48133 1.61681 1.10273 1.12275 1.19486 0.93890 0.93227 0.81866 1.21415 0.93119 1.33368 1.09434 0.91780 1.24899 0.98553 0.94736 0.95216 1.69914 1.36275 1.33683 1.12528 0.86638 0.85236 0.79096 0.77470 1.20205 1.21095 1.19687 1.20825 0.91994 0.82997 1.01333 1.22743 0.98708 0.95389 1.00675 1.23024 1.03273 1.04406 0.90735 1.22899 1.00628 0.96234 1.02133 0.92205 0.92867 0.93533 0.92518 0.92241 0.92711 0.93239 0.93111 0.93727 0.90111 0.94332 0.94581 0.94421 0.92478 0.90578 0.90218 0.88249 0.88536 0.89352 0.89324 0.88973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.68 37.16 0.36 -1.94 16 2 C -0.11 -1.82 4.26 -26.73 -0.11 -1.93 16 3 C -0.12 -2.22 2.15 -90.62 -0.19 -2.41 16 4 H 0.13 2.76 4.70 -51.93 -0.24 2.51 16 5 C -0.14 -2.45 8.58 37.16 0.32 -2.13 16 6 C 0.08 1.65 1.63 -27.88 -0.05 1.60 16 7 H 0.08 1.63 5.81 -51.93 -0.30 1.33 16 8 O -0.36 -6.77 8.85 -54.59 -0.48 -7.26 16 9 C 0.03 0.37 10.46 101.05 1.06 1.43 16 10 C 0.52 11.12 5.88 -10.99 -0.06 11.06 16 11 O -0.55 -13.21 16.02 -13.80 -0.22 -13.43 16 12 N -0.59 -12.39 2.46 -175.06 -0.43 -12.82 16 13 C 0.24 5.35 4.85 -5.20 -0.03 5.32 16 14 C -0.53 -12.95 6.80 -34.44 -0.23 -13.19 16 15 H 0.06 1.59 7.62 -52.48 -0.40 1.19 16 16 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 17 N -0.89 -23.16 13.29 55.43 0.74 -22.42 16 18 Si 0.89 19.62 29.54 -169.99 -5.02 14.60 16 19 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 20 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 22 C 0.15 2.86 5.73 -4.04 -0.02 2.84 16 23 C -0.16 -2.61 6.01 -90.62 -0.54 -3.15 16 24 C -0.18 -2.60 10.18 -26.69 -0.27 -2.87 16 25 C -0.18 -2.49 10.25 -26.69 -0.27 -2.77 16 26 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.05 0.76 6.59 -51.93 -0.34 0.42 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.85 6.66 -51.93 -0.35 0.51 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.05 0.97 7.60 -51.93 -0.39 0.58 16 32 H 0.05 0.80 6.59 -51.93 -0.34 0.46 16 33 H 0.05 1.00 7.23 -51.93 -0.38 0.63 16 34 H 0.04 0.58 6.07 -51.93 -0.32 0.26 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.04 0.52 7.99 -51.93 -0.42 0.11 16 37 H 0.04 0.85 5.84 -51.93 -0.30 0.55 16 38 H 0.04 0.91 8.12 -51.93 -0.42 0.49 16 39 H 0.27 6.66 8.31 -40.82 -0.34 6.33 16 40 H 0.08 1.46 7.35 -51.93 -0.38 1.08 16 41 H 0.08 1.48 7.84 -51.93 -0.41 1.07 16 42 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 43 H 0.10 1.42 8.03 -51.93 -0.42 1.01 16 44 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 45 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 360.86 15.07 5.44 5.44 Total: -1.00 -27.54 360.86 -8.06 -35.60 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -7.92 Total: 6.82 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -0.15 Total: -6.52 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: 0.31 Total: -35.25 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.70 Total: -20.69 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -27.54 -8.06 -35.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355664296.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.574 kcal (2) G-P(sol) polarization free energy of solvation -27.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds