Wall clock time and date at job start Tue Mar 31 2020 05:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47164 * 2 1 4 4 C 1.52998 * 109.47164 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.49106 * 305.02663 * 4 3 2 6 6 C 1.53097 * 109.48121 * 185.00139 * 4 3 2 7 7 C 1.53177 * 109.16154 * 182.40663 * 6 4 3 8 8 H 1.08990 * 109.54563 * 297.11035 * 7 6 4 9 9 C 1.50700 * 109.53811 * 176.84328 * 7 6 4 10 10 O 1.21274 * 120.00516 * 333.91189 * 9 7 6 11 11 N 1.34783 * 119.99815 * 153.91718 * 9 7 6 12 12 C 1.46503 * 120.00311 * 185.16882 * 11 9 7 13 13 C 1.52999 * 109.47227 * 89.59569 * 12 11 9 14 14 C 1.46503 * 120.00053 * 5.16132 * 11 9 7 15 15 C 1.50703 * 109.46882 * 93.70151 * 14 11 9 16 16 H 1.07998 * 119.99676 * 359.97438 * 15 14 11 17 17 C 1.37877 * 119.99716 * 180.02562 * 15 14 11 18 18 N 1.31512 * 119.99498 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 120.00353 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47145 * 89.99595 * 19 17 15 21 21 H 1.48503 * 109.46939 * 210.00164 * 19 17 15 22 22 H 1.48502 * 109.47179 * 330.00047 * 19 17 15 23 23 C 1.53178 * 109.03654 * 56.97982 * 7 6 4 24 24 C 1.53088 * 109.16378 * 303.01480 * 23 7 6 25 25 O 1.42901 * 109.48524 * 65.05324 * 4 3 2 26 26 H 1.08997 * 109.47301 * 299.99803 * 1 2 3 27 27 H 1.09000 * 109.46953 * 60.00796 * 1 2 3 28 28 H 1.09007 * 109.46847 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47450 * 239.99523 * 2 1 3 30 30 H 1.09002 * 109.47305 * 120.00090 * 2 1 3 31 31 H 1.08997 * 109.46850 * 59.99921 * 3 2 1 32 32 H 1.09003 * 109.47044 * 299.99440 * 3 2 1 33 33 H 1.08996 * 109.52158 * 62.49800 * 6 4 3 34 34 H 1.09005 * 109.51789 * 302.30851 * 6 4 3 35 35 H 1.08995 * 109.47264 * 209.60073 * 12 11 9 36 36 H 1.09005 * 109.46761 * 329.59984 * 12 11 9 37 37 H 1.08997 * 109.47146 * 303.89108 * 13 12 11 38 38 H 1.08997 * 109.46826 * 63.88932 * 13 12 11 39 39 H 1.08997 * 109.47004 * 183.88860 * 13 12 11 40 40 H 1.08995 * 109.47049 * 213.70446 * 14 11 9 41 41 H 1.09007 * 109.46852 * 333.70660 * 14 11 9 42 42 H 0.97003 * 120.00030 * 179.97438 * 18 17 15 43 43 H 1.09004 * 109.51943 * 183.11071 * 23 7 6 44 44 H 1.09001 * 109.52343 * 62.92180 * 23 7 6 45 45 H 1.08997 * 109.48025 * 177.59101 * 24 23 7 46 46 H 1.09000 * 109.48328 * 297.63143 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9340 0.8526 0.8405 6 6 4.0806 2.8803 0.1252 7 6 5.6111 2.8775 0.0633 8 1 6.0093 2.3187 0.9101 9 6 6.1199 4.2953 0.1085 10 8 5.4191 5.2039 -0.2838 11 7 7.3540 4.5535 0.5848 12 6 7.8064 5.9388 0.7349 13 6 7.4309 6.4500 2.1272 14 6 8.2431 3.4488 0.9528 15 6 9.1279 3.1049 -0.2177 16 1 9.0367 3.6540 -1.1431 17 6 10.0531 2.0886 -0.1073 18 7 10.8248 1.7882 -1.1289 19 14 10.2093 1.1374 1.4928 20 1 9.2958 -0.0330 1.4641 21 1 11.6091 0.6690 1.6555 22 1 9.8473 2.0201 2.6308 23 6 6.0571 2.2145 -1.2435 24 6 5.4702 0.8024 -1.3164 25 8 4.0461 0.8745 -1.2224 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8901 33 1 3.7552 3.3004 1.0769 34 1 3.6840 3.4806 -0.6937 35 1 8.8884 5.9832 0.6111 36 1 7.3283 6.5611 -0.0218 37 1 6.3567 6.3413 2.2767 38 1 7.9632 5.8716 2.8823 39 1 7.7054 7.5013 2.2145 40 1 8.8608 3.7463 1.8002 41 1 7.6469 2.5780 1.2257 42 1 11.4760 1.0734 -1.0512 43 1 7.1454 2.1585 -1.2706 44 1 5.7004 2.8013 -2.0900 45 1 5.7491 0.3414 -2.2639 46 1 5.8590 0.2041 -0.4924 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356808281.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:08 Heat of formation + Delta-G solvation = -111.197658 kcal Electronic energy + Delta-G solvation = -23909.624377 eV Core-core repulsion = 20605.249707 eV Total energy + Delta-G solvation = -3304.374669 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.00377 -38.44840 -35.35341 -34.97211 -33.45177 -32.64847 -31.10650 -30.46907 -27.75023 -27.09199 -24.97173 -22.88434 -22.55289 -22.31448 -20.98803 -20.07981 -18.08048 -17.06368 -16.55180 -16.27058 -15.86517 -15.29891 -14.68560 -14.62581 -14.34358 -13.97127 -13.82450 -13.60237 -13.17080 -13.05051 -12.72375 -12.57601 -12.32802 -12.17492 -12.11771 -11.87342 -11.67254 -11.37726 -11.15634 -11.02594 -10.94996 -10.87267 -10.70002 -10.61113 -10.47102 -10.31194 -10.23966 -9.95369 -9.66367 -9.43496 -8.84348 -8.74659 -7.77789 -6.27421 -4.28455 3.11666 3.20431 3.22216 3.30345 3.78956 4.02341 4.20809 4.71218 4.97628 5.02315 5.02583 5.11148 5.19672 5.29641 5.36114 5.42700 5.51928 5.62669 5.65190 5.71075 5.72611 5.78536 5.79351 5.83994 5.86263 5.97102 6.04191 6.07528 6.19768 6.22116 6.28515 6.30790 6.34344 6.42472 6.44626 6.52697 6.63487 6.67629 6.85509 7.32140 7.40170 7.52820 8.09618 8.37934 8.77295 8.91301 9.31821 10.84749 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.015007 B = 0.005528 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.287200 B = 5063.712152 C = 6193.438418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.110 4.110 4 C 0.092 3.908 5 H 0.054 0.946 6 C -0.131 4.131 7 C -0.102 4.102 8 H 0.089 0.911 9 C 0.525 3.475 10 O -0.569 6.569 11 N -0.590 5.590 12 C 0.113 3.887 13 C -0.163 4.163 14 C 0.206 3.794 15 C -0.539 4.539 16 H 0.080 0.920 17 C 0.078 3.922 18 N -0.888 5.888 19 Si 0.867 3.133 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.264 1.264 23 C -0.151 4.151 24 C 0.067 3.933 25 O -0.382 6.382 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.059 0.941 40 H 0.031 0.969 41 H 0.032 0.968 42 H 0.267 0.733 43 H 0.115 0.885 44 H 0.068 0.932 45 H 0.095 0.905 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.750 -1.770 5.250 13.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.147 4.147 4 C 0.034 3.966 5 H 0.072 0.928 6 C -0.169 4.169 7 C -0.123 4.123 8 H 0.107 0.893 9 C 0.313 3.687 10 O -0.449 6.449 11 N -0.320 5.320 12 C -0.010 4.010 13 C -0.221 4.221 14 C 0.085 3.915 15 C -0.577 4.577 16 H 0.098 0.902 17 C -0.126 4.126 18 N -0.525 5.525 19 Si 0.694 3.306 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.189 1.189 23 C -0.189 4.189 24 C -0.010 4.010 25 O -0.301 6.301 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.049 0.951 41 H 0.049 0.951 42 H 0.077 0.923 43 H 0.133 0.867 44 H 0.086 0.914 45 H 0.113 0.887 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.048 -1.481 4.851 13.999 hybrid contribution 0.722 -0.504 1.062 1.379 sum -12.327 -1.984 5.913 13.815 Atomic orbital electron populations 1.21780 0.96208 1.01319 1.01607 1.21485 0.95279 0.96798 1.02449 1.21619 0.93007 0.97427 1.02693 1.22091 0.94233 0.92940 0.87340 0.92764 1.22075 0.94336 0.97165 1.03319 1.21266 0.95832 0.94499 1.00734 0.89258 1.20361 0.81324 0.90543 0.76493 1.90580 1.57675 1.47416 1.49264 1.47949 1.14096 1.07330 1.62658 1.21255 1.00299 0.82907 0.96546 1.22119 1.01531 1.00484 0.97986 1.19864 0.89597 0.85040 0.97044 1.21342 1.18426 1.18590 0.99339 0.90226 1.24858 0.95005 0.96574 0.96128 1.69887 1.22011 1.30317 1.30292 0.86985 0.78151 0.80945 0.84556 1.19777 1.20823 1.18910 1.22281 1.05044 0.95898 0.95701 1.22562 0.80065 0.96227 1.02104 1.87868 1.21651 1.82319 1.38276 0.93010 0.92775 0.92998 0.91144 0.92379 0.90865 0.91066 0.91400 0.90009 0.90198 0.90835 0.92927 0.92799 0.92230 0.95074 0.95062 0.92297 0.86653 0.91356 0.88673 0.93230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 37.16 0.37 -0.98 16 2 C -0.12 -1.29 5.83 -26.73 -0.16 -1.45 16 3 C -0.11 -1.27 4.92 -26.73 -0.13 -1.41 16 4 C 0.09 1.28 2.64 -26.68 -0.07 1.21 16 5 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 6 C -0.13 -2.05 4.31 -26.59 -0.11 -2.16 16 7 C -0.10 -1.83 1.86 -91.59 -0.17 -2.00 16 8 H 0.09 1.55 6.15 -51.93 -0.32 1.23 16 9 C 0.52 10.74 6.77 -10.98 -0.07 10.67 16 10 O -0.57 -12.78 15.61 5.56 0.09 -12.69 16 11 N -0.59 -12.05 2.46 -175.05 -0.43 -12.48 16 12 C 0.11 2.06 6.18 -4.04 -0.02 2.04 16 13 C -0.16 -2.48 10.24 37.16 0.38 -2.10 16 14 C 0.21 4.43 4.01 -5.19 -0.02 4.41 16 15 C -0.54 -13.61 8.03 -34.44 -0.28 -13.88 16 16 H 0.08 2.28 8.06 -52.49 -0.42 1.85 16 17 C 0.08 2.03 5.47 -17.82 -0.10 1.94 16 18 N -0.89 -24.92 13.96 55.43 0.77 -24.14 16 19 Si 0.87 19.18 27.47 -169.99 -4.67 14.51 16 20 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.26 -5.57 6.54 56.52 0.37 -5.20 16 23 C -0.15 -2.76 5.37 -26.59 -0.14 -2.91 16 24 C 0.07 1.06 6.84 37.20 0.25 1.32 16 25 O -0.38 -5.97 9.94 -35.23 -0.35 -6.32 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 29 H 0.07 0.82 7.82 -51.93 -0.41 0.41 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.08 1.40 7.76 -51.93 -0.40 1.00 16 35 H 0.08 1.45 8.07 -51.93 -0.42 1.03 16 36 H 0.07 1.38 7.37 -51.93 -0.38 1.00 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.03 0.67 7.16 -51.93 -0.37 0.30 16 41 H 0.03 0.65 5.09 -51.93 -0.26 0.39 16 42 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.12 2.43 5.93 -51.93 -0.31 2.12 16 44 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 45 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 46 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 358.27 15.07 5.40 5.40 Total: -1.00 -28.60 358.27 -7.85 -36.44 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -8.38 Total: 4.59 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -0.28 Total: -5.30 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.34 Total: -36.62 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.26 Total: -19.02 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -4.67 Total: 14.51 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.60 -7.85 -36.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356808281.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.753 kcal (2) G-P(sol) polarization free energy of solvation -28.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds