Wall clock time and date at job start Tue Mar 31 2020 06:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53009 * 109.47128 * 2 1 4 4 H 1.09000 * 109.46624 * 304.99621 * 3 2 1 5 5 C 1.50702 * 109.46918 * 185.00143 * 3 2 1 6 6 H 1.08002 * 119.99446 * 239.99482 * 5 3 2 7 7 C 1.37871 * 120.00072 * 60.00109 * 5 3 2 8 8 N 1.31516 * 119.99826 * 179.72119 * 7 5 3 9 9 Si 1.86800 * 120.00406 * 359.97438 * 7 5 3 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 N 1.46495 * 109.47194 * 64.99674 * 3 2 1 14 14 C 1.34776 * 120.00388 * 275.00617 * 13 3 2 15 15 O 1.21281 * 119.99842 * 359.97438 * 14 13 3 16 16 C 1.50698 * 120.00287 * 180.02562 * 14 13 3 17 17 C 1.53003 * 109.47272 * 179.97438 * 16 14 13 18 18 H 1.08996 * 109.53661 * 55.00027 * 17 16 14 19 19 C 1.53175 * 109.54252 * 294.82405 * 17 16 14 20 20 C 1.53087 * 109.16469 * 183.15417 * 19 17 16 21 21 O 1.42910 * 109.41644 * 57.60201 * 20 19 17 22 22 C 1.42895 * 114.09786 * 298.84891 * 21 20 19 23 23 H 1.09001 * 109.48147 * 301.17183 * 22 21 20 24 24 C 1.53004 * 109.48217 * 181.15213 * 22 21 20 25 25 C 1.52998 * 109.47199 * 64.99240 * 24 22 21 26 26 C 1.53102 * 109.49155 * 61.10685 * 22 21 20 27 27 H 1.09000 * 109.47432 * 300.00284 * 1 2 3 28 28 H 1.09008 * 109.47098 * 60.00045 * 1 2 3 29 29 H 1.09001 * 109.47347 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47417 * 240.00273 * 2 1 3 31 31 H 1.09000 * 109.47228 * 119.99666 * 2 1 3 32 32 H 0.96999 * 120.00128 * 180.27192 * 8 7 5 33 33 H 0.97008 * 120.00075 * 94.99858 * 13 3 2 34 34 H 1.09000 * 109.47224 * 299.99957 * 16 14 13 35 35 H 1.09007 * 109.47091 * 59.99436 * 16 14 13 36 36 H 1.09004 * 109.52149 * 303.05853 * 19 17 16 37 37 H 1.08999 * 109.52554 * 63.24459 * 19 17 16 38 38 H 1.09000 * 109.48408 * 177.59010 * 20 19 17 39 39 H 1.09001 * 109.47791 * 297.61653 * 20 19 17 40 40 H 1.08999 * 109.47295 * 185.00264 * 24 22 21 41 41 H 1.09002 * 109.46267 * 305.00031 * 24 22 21 42 42 H 1.09008 * 109.46553 * 60.00530 * 25 24 22 43 43 H 1.09000 * 109.47271 * 180.02562 * 25 24 22 44 44 H 1.09001 * 109.47350 * 300.00893 * 25 24 22 45 45 H 1.09003 * 109.59990 * 182.57585 * 26 22 21 46 46 H 1.09003 * 109.44940 * 62.38568 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1239 6 1 4.1471 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 5.4536 0.8849 -1.3387 9 14 3.0963 0.1089 -2.5701 10 1 2.8811 -1.3288 -2.2668 11 1 1.7851 0.8030 -2.6343 12 1 3.7905 0.2407 -3.8762 13 7 1.6523 2.0976 1.2517 14 6 0.4350 2.6644 1.3669 15 8 -0.3394 2.6326 0.4341 16 6 0.0365 3.3387 2.6544 17 6 -1.3824 3.8953 2.5207 18 1 -2.0606 3.0964 2.2212 19 6 -1.4001 5.0052 1.4651 20 6 -2.8049 5.6092 1.3944 21 8 -3.1751 6.1031 2.6834 22 6 -3.2217 5.1009 3.7009 23 1 -3.9367 4.3284 3.4177 24 6 -3.6544 5.7364 5.0237 25 6 -5.0895 6.2514 4.8967 26 6 -1.8344 4.4744 3.8648 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.8766 0.4903 -2.1173 33 1 2.2718 2.1233 1.9978 34 1 0.0679 2.6147 3.4686 35 1 0.7280 4.1543 2.8666 36 1 -0.6838 5.7798 1.7390 37 1 -1.1335 4.5884 0.4938 38 1 -2.8127 6.4283 0.6753 39 1 -3.5145 4.8435 1.0810 40 1 -3.6045 4.9917 5.8181 41 1 -2.9901 6.5671 5.2620 42 1 -5.7538 5.4207 4.6583 43 1 -5.3977 6.7046 5.8390 44 1 -5.1394 6.9960 4.1023 45 1 -1.8782 3.6783 4.6081 46 1 -1.1273 5.2380 4.1887 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358084668.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:17 Heat of formation + Delta-G solvation = -112.548369 kcal Electronic energy + Delta-G solvation = -23388.454157 eV Core-core repulsion = 20084.020917 eV Total energy + Delta-G solvation = -3304.433241 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.01540 -38.89922 -35.65014 -34.32225 -34.08251 -32.40125 -31.58468 -29.88516 -28.87397 -27.28763 -24.39839 -23.47970 -22.63308 -21.45723 -20.64258 -19.86308 -19.50644 -17.26776 -16.51066 -16.02657 -15.91366 -15.60267 -15.33685 -14.69730 -14.43872 -14.17883 -13.83374 -13.65992 -13.30719 -13.25716 -12.74821 -12.70419 -12.32451 -12.08122 -11.89468 -11.79577 -11.70192 -11.49335 -11.26229 -11.13000 -11.04430 -10.91477 -10.79763 -10.63918 -10.45291 -10.22263 -9.93412 -9.57585 -9.50046 -9.23505 -8.95218 -8.75676 -8.03596 -6.22304 -4.24680 3.21678 3.27921 3.34146 3.38953 3.72610 3.95124 4.30251 4.56268 4.70270 4.81949 4.87100 4.99638 5.11338 5.12357 5.20254 5.27682 5.38091 5.45289 5.54285 5.57625 5.59891 5.72861 5.74698 5.79427 5.90594 5.92741 5.94848 5.96951 6.01171 6.07084 6.15334 6.17444 6.40412 6.43485 6.64926 6.68790 6.84418 6.94623 7.23025 7.27019 7.32250 7.52494 8.15989 8.54683 8.75537 8.98179 9.38993 10.89862 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.036461 B = 0.003425 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.758531 B = 8172.432173 C = 8252.898558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.138 4.138 3 C 0.242 3.758 4 H 0.048 0.952 5 C -0.535 4.535 6 H 0.079 0.921 7 C 0.078 3.922 8 N -0.893 5.893 9 Si 0.884 3.116 10 H -0.276 1.276 11 H -0.260 1.260 12 H -0.295 1.295 13 N -0.703 5.703 14 C 0.502 3.498 15 O -0.550 6.550 16 C -0.138 4.138 17 C -0.069 4.069 18 H 0.077 0.923 19 C -0.155 4.155 20 C 0.064 3.936 21 O -0.382 6.382 22 C 0.091 3.909 23 H 0.055 0.945 24 C -0.116 4.116 25 C -0.150 4.150 26 C -0.146 4.146 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.030 0.970 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.267 0.733 33 H 0.394 0.606 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.063 0.937 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.048 0.952 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.051 0.949 43 H 0.051 0.949 44 H 0.062 0.938 45 H 0.071 0.929 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.282 6.945 11.724 21.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.177 4.177 3 C 0.139 3.861 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.097 0.903 7 C -0.126 4.126 8 N -0.530 5.530 9 Si 0.714 3.286 10 H -0.203 1.203 11 H -0.185 1.185 12 H -0.222 1.222 13 N -0.351 5.351 14 C 0.288 3.712 15 O -0.429 6.429 16 C -0.178 4.178 17 C -0.088 4.088 18 H 0.096 0.904 19 C -0.193 4.193 20 C -0.012 4.012 21 O -0.301 6.301 22 C 0.033 3.967 23 H 0.073 0.927 24 C -0.153 4.153 25 C -0.207 4.207 26 C -0.184 4.184 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.227 0.773 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.116 0.884 38 H 0.108 0.892 39 H 0.066 0.934 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.081 0.919 45 H 0.089 0.911 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.690 7.058 10.964 21.180 hybrid contribution 0.193 -0.897 -0.449 1.021 sum -16.497 6.161 10.516 20.511 Atomic orbital electron populations 1.21864 0.96950 0.98916 1.02238 1.22280 0.94347 1.00067 1.00993 1.19118 0.95506 0.88437 0.83062 0.93398 1.21069 0.88725 1.39661 1.07837 0.90271 1.24844 0.94864 0.95174 0.97696 1.69871 1.08719 1.44661 1.29720 0.86891 0.80955 0.79916 0.80881 1.20293 1.18481 1.22200 1.46208 1.15035 1.55969 1.17847 1.20454 0.82366 0.78973 0.89425 1.90614 1.51485 1.59960 1.40889 1.21739 0.98010 1.01119 0.96940 1.20883 0.95680 0.97832 0.94436 0.90440 1.22364 0.97335 0.97766 1.01830 1.22561 0.95176 0.98959 0.84539 1.87880 1.89572 1.34702 1.17984 1.22092 0.95584 0.90326 0.88664 0.92692 1.21547 0.97499 1.01035 0.95259 1.21719 0.95886 1.01378 1.01729 1.22307 0.97621 1.00736 0.97726 0.92920 0.92903 0.95112 0.92887 0.92406 0.92297 0.77300 0.89461 0.89326 0.91801 0.88417 0.89152 0.93372 0.90798 0.91177 0.93029 0.92952 0.91938 0.91055 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 8.51 37.15 0.32 -2.50 16 2 C -0.14 -3.04 5.10 -26.73 -0.14 -3.17 16 3 C 0.24 5.64 1.83 -69.08 -0.13 5.51 16 4 H 0.05 1.24 6.63 -51.93 -0.34 0.90 16 5 C -0.53 -14.33 9.31 -34.44 -0.32 -14.65 16 6 H 0.08 2.23 7.98 -52.49 -0.42 1.82 16 7 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 8 N -0.89 -26.41 13.96 55.43 0.77 -25.64 16 9 Si 0.88 21.73 24.41 -169.99 -4.15 17.58 16 10 H -0.28 -6.59 6.84 56.52 0.39 -6.20 16 11 H -0.26 -6.33 6.52 56.52 0.37 -5.97 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 N -0.70 -13.38 5.02 -54.93 -0.28 -13.66 16 14 C 0.50 8.74 6.14 -10.99 -0.07 8.67 16 15 O -0.55 -11.08 11.13 5.56 0.06 -11.02 16 16 C -0.14 -1.74 5.18 -27.88 -0.14 -1.89 16 17 C -0.07 -0.85 1.92 -90.44 -0.17 -1.02 16 18 H 0.08 1.04 7.96 -51.93 -0.41 0.63 16 19 C -0.16 -2.03 5.13 -26.60 -0.14 -2.17 16 20 C 0.06 0.76 6.84 37.20 0.25 1.01 16 21 O -0.38 -4.64 9.94 -35.23 -0.35 -4.99 16 22 C 0.09 0.93 2.64 -26.68 -0.07 0.86 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 C -0.12 -0.98 5.64 -26.73 -0.15 -1.13 16 25 C -0.15 -1.20 9.81 37.16 0.36 -0.84 16 26 C -0.15 -1.46 4.71 -26.59 -0.13 -1.58 16 27 H 0.05 1.01 5.65 -51.93 -0.29 0.71 16 28 H 0.05 1.11 7.85 -51.92 -0.41 0.70 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 1.23 3.22 -51.93 -0.17 1.07 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.39 6.67 8.54 -40.82 -0.35 6.32 16 34 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.10 1.53 6.05 -51.93 -0.31 1.21 16 38 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 43 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.06 0.57 7.82 -51.93 -0.41 0.16 16 45 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 347.13 15.07 5.23 5.23 Total: -1.00 -30.25 347.13 -7.54 -37.79 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -8.22 Total: 5.52 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: -0.61 Total: -10.82 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.50 Total: -39.30 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -0.29 Total: -16.00 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.15 Total: 17.58 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.25 -7.54 -37.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358084668.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.762 kcal (2) G-P(sol) polarization free energy of solvation -30.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds