Wall clock time and date at job start Tue Mar 31 2020 06:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53009 * 109.46758 * 2 1 4 4 H 1.08992 * 109.47007 * 305.00081 * 3 2 1 5 5 C 1.50697 * 109.46769 * 185.00255 * 3 2 1 6 6 H 1.08002 * 119.99897 * 240.00210 * 5 3 2 7 7 C 1.37872 * 120.00319 * 60.00091 * 5 3 2 8 8 N 1.31517 * 120.00219 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00140 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47274 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.46842 * 120.00052 * 9 7 5 12 12 H 1.48497 * 109.47191 * 240.00062 * 9 7 5 13 13 N 1.46495 * 109.46763 * 65.00363 * 3 2 1 14 14 C 1.34779 * 120.00085 * 274.99364 * 13 3 2 15 15 O 1.21280 * 119.99920 * 0.02562 * 14 13 3 16 16 C 1.50692 * 120.00173 * 180.02562 * 14 13 3 17 17 C 1.52998 * 109.47203 * 180.02562 * 16 14 13 18 18 H 1.08999 * 109.54245 * 55.17847 * 17 16 14 19 19 C 1.53172 * 109.54464 * 294.99800 * 17 16 14 20 20 C 1.53090 * 109.16610 * 297.02710 * 19 17 16 21 21 O 1.42904 * 109.40944 * 302.38758 * 20 19 17 22 22 C 1.42899 * 114.10178 * 61.16185 * 21 20 19 23 23 H 1.09006 * 109.47773 * 58.82662 * 22 21 20 24 24 C 1.52992 * 109.48370 * 178.85238 * 22 21 20 25 25 C 1.52997 * 109.47482 * 294.99972 * 24 22 21 26 26 C 1.53096 * 109.41008 * 298.83960 * 22 21 20 27 27 H 1.08996 * 109.46836 * 299.99382 * 1 2 3 28 28 H 1.09000 * 109.47403 * 59.99732 * 1 2 3 29 29 H 1.08997 * 109.46712 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47287 * 240.00569 * 2 1 3 31 31 H 1.08991 * 109.47589 * 120.00127 * 2 1 3 32 32 H 0.96992 * 120.00301 * 180.02562 * 8 7 5 33 33 H 0.97004 * 120.00283 * 95.00058 * 13 3 2 34 34 H 1.09000 * 109.47261 * 60.00173 * 16 14 13 35 35 H 1.09003 * 109.47351 * 300.00634 * 16 14 13 36 36 H 1.08998 * 109.52394 * 177.11388 * 19 17 16 37 37 H 1.09009 * 109.57103 * 56.96236 * 19 17 16 38 38 H 1.09002 * 109.48220 * 182.40883 * 20 19 17 39 39 H 1.08998 * 109.48007 * 62.36943 * 20 19 17 40 40 H 1.09002 * 109.47103 * 174.99725 * 24 22 21 41 41 H 1.08998 * 109.46862 * 55.00537 * 24 22 21 42 42 H 1.09002 * 109.47153 * 59.99783 * 25 24 22 43 43 H 1.09001 * 109.46832 * 299.99974 * 25 24 22 44 44 H 1.09004 * 109.47261 * 179.97438 * 25 24 22 45 45 H 1.09004 * 109.51861 * 177.51079 * 26 22 21 46 46 H 1.09000 * 109.51997 * 297.69780 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5418 1.4444 -0.1239 6 1 4.1471 1.8890 0.6523 7 6 4.1432 0.8786 -1.2280 8 7 3.4061 0.3377 -2.1734 9 14 6.0049 0.8815 -1.3819 10 1 6.5987 1.5464 -0.1943 11 1 6.4970 -0.5173 -1.4631 12 1 6.3989 1.6170 -2.6103 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3397 2.6320 0.4345 16 6 0.0366 3.3385 2.6545 17 6 -1.3827 3.8941 2.5213 18 1 -2.0611 3.0940 2.2252 19 6 -1.4024 5.0008 1.4625 20 6 -0.5079 6.1542 1.9244 21 8 -0.9642 6.6307 3.1920 22 6 -0.9232 5.6521 4.2325 23 1 0.0992 5.2943 4.3549 24 6 -1.4045 6.2794 5.5423 25 6 -0.4243 7.3715 5.9753 26 6 -1.8343 4.4785 3.8633 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.8292 -0.0607 -2.9500 33 1 2.2719 2.1231 1.9978 34 1 0.7280 4.1540 2.8668 35 1 0.0680 2.6144 3.4687 36 1 -2.4227 5.3611 1.3312 37 1 -1.0303 4.6077 0.5164 38 1 -0.5518 6.9629 1.1948 39 1 0.5197 5.8028 2.0165 40 1 -1.4578 5.5120 6.3146 41 1 -2.3924 6.7155 5.3947 42 1 -0.3710 8.1388 5.2030 43 1 0.5636 6.9352 6.1228 44 1 -0.7675 7.8187 6.9082 45 1 -1.7704 3.7111 4.6348 46 1 -2.8633 4.8283 3.7805 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358084669.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:21 Heat of formation + Delta-G solvation = -116.663624 kcal Electronic energy + Delta-G solvation = -23664.968838 eV Core-core repulsion = 20360.357147 eV Total energy + Delta-G solvation = -3304.611692 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.18741 -38.62936 -35.34336 -34.16543 -33.99694 -32.38164 -31.00547 -29.81907 -28.47367 -26.69503 -24.76040 -23.55552 -22.98097 -21.43729 -20.65630 -19.34363 -18.75538 -17.01118 -16.42624 -16.22367 -15.65005 -15.34337 -15.18073 -14.55347 -14.32851 -13.89047 -13.75215 -13.69300 -13.33982 -12.99250 -12.69363 -12.66524 -11.97586 -11.78732 -11.70007 -11.58361 -11.31660 -11.24879 -11.17743 -11.09698 -10.96327 -10.94245 -10.83471 -10.42052 -10.30087 -10.18667 -10.05143 -9.62542 -9.24796 -9.04973 -8.84307 -8.50703 -7.78883 -6.13537 -4.22882 3.22186 3.30318 3.32670 3.43568 3.79458 4.10800 4.37157 4.57354 4.81854 4.89151 4.99643 5.03400 5.16221 5.18089 5.26749 5.31898 5.37195 5.53241 5.60914 5.64673 5.72377 5.75132 5.79330 5.84010 5.92465 5.98556 6.12083 6.19680 6.32293 6.38537 6.38889 6.45354 6.50824 6.66321 7.03536 7.19535 7.29821 7.37026 7.48133 7.61773 7.73592 7.90211 8.18014 8.69423 8.78095 9.17247 9.45172 10.91740 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.023160 B = 0.003905 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.698482 B = 7169.214097 C = 7758.077973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.711 5.711 14 C 0.500 3.500 15 O -0.547 6.547 16 C -0.146 4.146 17 C -0.069 4.069 18 H 0.081 0.919 19 C -0.155 4.155 20 C 0.059 3.941 21 O -0.381 6.381 22 C 0.088 3.912 23 H 0.058 0.942 24 C -0.116 4.116 25 C -0.150 4.150 26 C -0.145 4.145 27 H 0.038 0.962 28 H 0.049 0.951 29 H 0.021 0.979 30 H 0.098 0.902 31 H 0.030 0.970 32 H 0.264 0.736 33 H 0.387 0.613 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.064 0.936 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.050 0.950 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.052 0.948 44 H 0.051 0.949 45 H 0.070 0.930 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.708 8.697 13.686 17.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.358 5.358 14 C 0.286 3.714 15 O -0.426 6.426 16 C -0.186 4.186 17 C -0.088 4.088 18 H 0.100 0.900 19 C -0.192 4.192 20 C -0.017 4.017 21 O -0.300 6.300 22 C 0.030 3.970 23 H 0.076 0.924 24 C -0.153 4.153 25 C -0.207 4.207 26 C -0.183 4.183 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.040 0.960 30 H 0.116 0.884 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.219 0.781 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.083 0.917 37 H 0.117 0.883 38 H 0.108 0.892 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.089 0.911 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.288 8.752 12.840 17.611 hybrid contribution 1.453 -0.447 0.169 1.529 sum -6.835 8.305 13.009 16.880 Atomic orbital electron populations 1.21829 0.98353 0.97935 1.01216 1.21930 0.92606 0.99914 1.02171 1.18753 0.94100 0.89138 0.81170 0.93386 1.21283 0.90841 1.38877 1.06220 0.92126 1.24888 0.98563 0.94834 0.95409 1.69902 1.35012 1.37698 1.09339 0.86422 0.84955 0.77777 0.78113 1.19767 1.20882 1.20878 1.46533 1.14798 1.56071 1.18428 1.20342 0.82645 0.79264 0.89187 1.90623 1.51342 1.59853 1.40811 1.21889 0.98269 1.00945 0.97505 1.20860 0.95639 0.97972 0.94328 0.90033 1.22306 1.00665 0.95358 1.00890 1.22638 0.96961 0.97277 0.84846 1.87875 1.86810 1.37125 1.18233 1.22149 0.98325 0.88734 0.87803 0.92384 1.21548 1.00063 0.98747 0.94987 1.21721 0.98954 0.99080 1.00990 1.22275 1.00368 0.97989 0.97668 0.94275 0.93170 0.95988 0.88384 0.95163 0.92638 0.78131 0.89685 0.89645 0.91720 0.88317 0.89162 0.93181 0.90842 0.91303 0.91931 0.92934 0.93012 0.91105 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.51 37.16 0.32 -2.69 16 2 C -0.13 -3.07 5.45 -26.73 -0.15 -3.21 16 3 C 0.27 6.67 2.24 -69.08 -0.15 6.51 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 5 C -0.53 -13.93 8.73 -34.44 -0.30 -14.23 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.55 11.30 55.43 0.63 -23.92 16 9 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 10 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 N -0.71 -14.21 5.02 -54.94 -0.28 -14.48 16 14 C 0.50 9.27 6.10 -10.99 -0.07 9.21 16 15 O -0.55 -11.83 11.12 5.56 0.06 -11.77 16 16 C -0.15 -1.98 4.61 -27.89 -0.13 -2.11 16 17 C -0.07 -0.90 2.33 -90.44 -0.21 -1.12 16 18 H 0.08 1.18 7.96 -51.93 -0.41 0.76 16 19 C -0.15 -2.15 5.40 -26.60 -0.14 -2.29 16 20 C 0.06 0.76 6.57 37.20 0.24 1.01 16 21 O -0.38 -4.87 9.94 -35.23 -0.35 -5.22 16 22 C 0.09 0.94 2.37 -26.69 -0.06 0.88 16 23 H 0.06 0.62 6.72 -51.93 -0.35 0.27 16 24 C -0.12 -1.04 5.64 -26.74 -0.15 -1.19 16 25 C -0.15 -1.30 9.81 37.16 0.36 -0.94 16 26 C -0.15 -1.54 4.92 -26.59 -0.13 -1.67 16 27 H 0.04 0.83 5.64 -51.93 -0.29 0.54 16 28 H 0.05 1.18 7.85 -51.93 -0.41 0.77 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.39 6.78 8.54 -40.82 -0.35 6.43 16 34 H 0.08 1.07 5.04 -51.93 -0.26 0.81 16 35 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.10 1.65 5.92 -51.92 -0.31 1.34 16 38 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.05 0.66 6.50 -51.93 -0.34 0.32 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.61 7.82 -51.93 -0.41 0.20 16 43 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 347.35 15.07 5.23 5.23 Total: -1.00 -28.92 347.35 -8.41 -37.32 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -8.02 Total: 7.58 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: -0.67 Total: -10.18 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: 0.35 Total: -38.41 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.29 Total: -16.99 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.92 -8.41 -37.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358084669.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.339 kcal (2) G-P(sol) polarization free energy of solvation -28.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds