Wall clock time and date at job start Tue Mar 31 2020 06:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47495 * 2 1 4 4 H 1.08999 * 109.46965 * 304.99930 * 3 2 1 5 5 C 1.50696 * 109.46890 * 185.00337 * 3 2 1 6 6 H 1.08002 * 120.00157 * 239.99837 * 5 3 2 7 7 C 1.37881 * 120.00447 * 59.99907 * 5 3 2 8 8 N 1.31510 * 119.99635 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 120.00210 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.47150 * 60.00100 * 9 7 5 11 11 H 1.48498 * 109.47193 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47405 * 300.00440 * 9 7 5 13 13 N 1.46499 * 109.47136 * 65.00280 * 3 2 1 14 14 C 1.34777 * 119.99665 * 275.27771 * 13 3 2 15 15 O 1.21283 * 119.99990 * 359.71991 * 14 13 3 16 16 C 1.50698 * 119.99538 * 179.72653 * 14 13 3 17 17 C 1.52999 * 109.47004 * 179.97438 * 16 14 13 18 18 H 1.08996 * 109.54557 * 305.00217 * 17 16 14 19 19 C 1.53180 * 109.54436 * 65.17613 * 17 16 14 20 20 C 1.53103 * 109.16056 * 176.76040 * 19 17 16 21 21 O 1.42901 * 109.48628 * 302.52360 * 20 19 17 22 22 C 1.42911 * 114.09561 * 61.10920 * 21 20 19 23 23 H 1.09004 * 109.47862 * 178.85897 * 22 21 20 24 24 C 1.53000 * 109.48855 * 58.83214 * 22 21 20 25 25 C 1.52998 * 109.47106 * 65.05144 * 24 22 21 26 26 C 1.53090 * 109.41506 * 298.84087 * 22 21 20 27 27 H 1.08995 * 109.47461 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46725 * 300.00105 * 1 2 3 29 29 H 1.08998 * 109.46763 * 59.99672 * 1 2 3 30 30 H 1.09001 * 109.46725 * 239.99895 * 2 1 3 31 31 H 1.08999 * 109.47141 * 120.00715 * 2 1 3 32 32 H 0.97000 * 120.00295 * 179.97438 * 8 7 5 33 33 H 0.97001 * 119.99790 * 94.99484 * 13 3 2 34 34 H 1.09003 * 109.47112 * 299.99065 * 16 14 13 35 35 H 1.08993 * 109.47916 * 59.99687 * 16 14 13 36 36 H 1.09006 * 109.52152 * 296.75442 * 19 17 16 37 37 H 1.09000 * 109.52397 * 56.94185 * 19 17 16 38 38 H 1.08999 * 109.48653 * 182.49607 * 20 19 17 39 39 H 1.09006 * 109.41538 * 62.50978 * 20 19 17 40 40 H 1.09000 * 109.47316 * 185.04973 * 24 22 21 41 41 H 1.08994 * 109.47036 * 305.05259 * 24 22 21 42 42 H 1.09006 * 109.47280 * 179.97438 * 25 24 22 43 43 H 1.09005 * 109.47125 * 299.99678 * 25 24 22 44 44 H 1.09002 * 109.47378 * 60.00112 * 25 24 22 45 45 H 1.08998 * 109.52343 * 297.70304 * 26 22 21 46 46 H 1.09003 * 109.51779 * 177.51242 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4441 -0.1239 6 1 4.1474 1.8886 0.6522 7 6 4.1433 0.8781 -1.2281 8 7 3.4062 0.3364 -2.1729 9 14 6.0049 0.8809 -1.3819 10 1 6.5975 0.1468 -0.2350 11 1 6.3977 0.2174 -2.6511 12 1 6.4996 2.2810 -1.3822 13 7 1.6527 2.0974 1.2518 14 6 0.4333 2.6595 1.3689 15 8 -0.3413 2.6275 0.4362 16 6 0.0325 3.3279 2.6587 17 6 -1.3884 3.8799 2.5269 18 1 -1.4445 4.5392 1.6608 19 6 -2.3745 2.7207 2.3532 20 6 -3.8001 3.2768 2.3034 21 8 -4.0637 4.0197 3.4953 22 6 -3.2025 5.1444 3.6843 23 1 -3.4812 5.6658 4.6001 24 6 -3.3372 6.0962 2.4941 25 6 -4.7536 6.6738 2.4607 26 6 -1.7532 4.6631 3.7918 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.8292 -0.0614 -2.9499 33 1 2.2722 2.1230 1.9978 34 1 0.0663 2.6011 3.4704 35 1 0.7208 4.1451 2.8738 36 1 -2.1556 2.1923 1.4252 37 1 -2.2818 2.0343 3.1948 38 1 -4.5092 2.4528 2.2244 39 1 -3.9041 3.9303 1.4372 40 1 -2.6162 6.9076 2.5942 41 1 -3.1451 5.5515 1.5697 42 1 -4.8494 7.3523 1.6129 43 1 -5.4746 5.8625 2.3605 44 1 -4.9457 7.2186 3.3851 45 1 -1.6475 4.0172 4.6634 46 1 -1.0905 5.5227 3.8917 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358084673.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:29 Heat of formation + Delta-G solvation = -116.789459 kcal Electronic energy + Delta-G solvation = -23637.609371 eV Core-core repulsion = 20332.992223 eV Total energy + Delta-G solvation = -3304.617148 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.16576 -38.80257 -35.35229 -34.18307 -33.46460 -32.37266 -31.03271 -30.17582 -28.67060 -26.78778 -24.20322 -23.42592 -22.99369 -21.97389 -20.11513 -19.26612 -19.07191 -17.07852 -16.57784 -15.86724 -15.63188 -15.49446 -15.08832 -14.64434 -14.53872 -14.08510 -13.65877 -13.58570 -13.02163 -12.75485 -12.65955 -12.54737 -12.29967 -12.04458 -11.67428 -11.56813 -11.29657 -11.24846 -11.22101 -10.99512 -10.98849 -10.82426 -10.73786 -10.41879 -10.33013 -10.14127 -9.97666 -9.62303 -9.39382 -9.05062 -8.79968 -8.48769 -7.78398 -6.12661 -4.22126 3.24427 3.29998 3.30927 3.46200 3.87161 4.11416 4.37504 4.64228 4.79355 4.86788 4.91560 5.03585 5.13709 5.18647 5.31345 5.39389 5.48316 5.53784 5.59753 5.65009 5.68318 5.75531 5.84630 5.87654 5.93856 6.04049 6.09279 6.17493 6.21273 6.39016 6.43209 6.49838 6.53105 6.67019 7.04511 7.20027 7.27204 7.37825 7.49196 7.62178 7.74561 7.91125 8.18965 8.70745 8.78698 9.18709 9.45783 10.92532 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.032829 B = 0.003527 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.696854 B = 7937.662873 C = 8234.594152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.048 0.952 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.711 5.711 14 C 0.500 3.500 15 O -0.548 6.548 16 C -0.139 4.139 17 C -0.069 4.069 18 H 0.080 0.920 19 C -0.154 4.154 20 C 0.058 3.942 21 O -0.379 6.379 22 C 0.093 3.907 23 H 0.097 0.903 24 C -0.161 4.161 25 C -0.147 4.147 26 C -0.146 4.146 27 H 0.021 0.979 28 H 0.039 0.961 29 H 0.049 0.951 30 H 0.098 0.902 31 H 0.029 0.971 32 H 0.265 0.735 33 H 0.387 0.613 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.061 0.939 38 H 0.089 0.911 39 H 0.053 0.947 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.051 0.949 43 H 0.058 0.942 44 H 0.051 0.949 45 H 0.070 0.930 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.883 8.166 11.458 17.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.359 5.359 14 C 0.285 3.715 15 O -0.428 6.428 16 C -0.180 4.180 17 C -0.088 4.088 18 H 0.099 0.901 19 C -0.192 4.192 20 C -0.018 4.018 21 O -0.298 6.298 22 C 0.035 3.965 23 H 0.115 0.885 24 C -0.198 4.198 25 C -0.205 4.205 26 C -0.184 4.184 27 H 0.040 0.960 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.116 0.884 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.219 0.781 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.117 0.883 37 H 0.079 0.921 38 H 0.107 0.893 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.088 0.912 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.545 7.979 10.701 17.648 hybrid contribution 1.712 -0.010 0.089 1.714 sum -9.833 7.969 10.789 16.631 Atomic orbital electron populations 1.21844 0.98374 0.97943 1.01226 1.21928 0.92617 0.99910 1.02165 1.18737 0.94045 0.89125 0.81200 0.93423 1.21215 0.90865 1.39037 1.06246 0.92233 1.24886 0.98557 0.94825 0.95411 1.69882 1.35194 1.37560 1.09336 0.86528 0.84941 0.78295 0.77447 1.20179 1.21133 1.20212 1.46530 1.14707 1.56219 1.18401 1.20378 0.82599 0.79254 0.89229 1.90616 1.51288 1.60035 1.40863 1.21761 0.97752 1.01125 0.97331 1.20897 0.93192 0.97064 0.97666 0.90149 1.22357 0.94336 0.98202 1.04267 1.22596 0.96678 0.95028 0.87512 1.87937 1.57224 1.41486 1.43195 1.22162 0.89690 0.86633 0.98032 0.88548 1.22214 0.98014 0.99550 1.00065 1.21697 0.96778 1.00735 1.01252 1.22283 0.96738 1.00566 0.98804 0.95998 0.94159 0.93192 0.88398 0.95174 0.92530 0.78111 0.89743 0.89660 0.88336 0.92063 0.89326 0.92886 0.91137 0.90699 0.92983 0.92251 0.92971 0.91155 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.51 37.16 0.32 -2.68 16 2 C -0.13 -3.07 5.45 -26.73 -0.15 -3.22 16 3 C 0.27 6.71 2.24 -69.09 -0.15 6.55 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.98 16 5 C -0.54 -14.03 8.73 -34.44 -0.30 -14.33 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.62 11.29 55.43 0.63 -24.00 16 9 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 13 N -0.71 -14.28 5.03 -54.94 -0.28 -14.55 16 14 C 0.50 9.29 6.13 -10.99 -0.07 9.22 16 15 O -0.55 -11.83 11.11 5.55 0.06 -11.77 16 16 C -0.14 -1.88 5.18 -27.88 -0.14 -2.03 16 17 C -0.07 -0.89 1.61 -90.43 -0.15 -1.04 16 18 H 0.08 1.15 6.55 -51.93 -0.34 0.81 16 19 C -0.15 -2.10 5.13 -26.59 -0.14 -2.23 16 20 C 0.06 0.72 6.51 37.21 0.24 0.96 16 21 O -0.38 -4.72 10.14 -35.23 -0.36 -5.08 16 22 C 0.09 0.96 3.29 -26.68 -0.09 0.88 16 23 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 24 C -0.16 -1.60 4.74 -26.73 -0.13 -1.72 16 25 C -0.15 -1.34 9.81 37.16 0.36 -0.97 16 26 C -0.15 -1.52 4.93 -26.59 -0.13 -1.65 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.04 0.84 5.63 -51.93 -0.29 0.55 16 29 H 0.05 1.17 7.84 -51.93 -0.41 0.76 16 30 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.39 6.81 8.54 -40.82 -0.35 6.46 16 34 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.10 1.61 6.05 -51.93 -0.31 1.30 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.05 0.65 6.24 -51.93 -0.32 0.33 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.85 4.98 -51.93 -0.26 0.59 16 42 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.58 7.83 -51.93 -0.41 0.18 16 44 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 346.91 15.07 5.23 5.23 Total: -1.00 -28.95 346.91 -8.36 -37.30 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -8.01 Total: 7.95 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -0.61 Total: -10.58 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.35 Total: -38.55 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.30 Total: -16.85 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.95 -8.36 -37.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358084673.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.485 kcal (2) G-P(sol) polarization free energy of solvation -28.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds