Wall clock time and date at job start Tue Mar 31 2020 06:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47081 * 2 1 4 4 H 1.09000 * 109.47749 * 55.02198 * 3 2 1 5 5 C 1.53093 * 109.48049 * 175.05658 * 3 2 1 6 6 C 1.53176 * 109.16396 * 177.59364 * 5 3 2 7 7 H 1.09000 * 109.61495 * 62.92935 * 6 5 3 8 8 C 1.52997 * 109.54393 * 183.15141 * 6 5 3 9 9 C 1.50703 * 109.47084 * 184.55402 * 8 6 5 10 10 O 1.21278 * 119.99985 * 0.02562 * 9 8 6 11 11 N 1.34779 * 119.99944 * 180.02562 * 9 8 6 12 12 C 1.46499 * 119.99872 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.46840 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.46886 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47291 * 179.97438 * 14 13 12 16 16 H 1.08006 * 119.99920 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99563 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00432 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47116 * 59.99479 * 19 17 15 21 21 H 1.48490 * 109.47381 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46756 * 300.00079 * 19 17 15 23 23 C 1.53181 * 109.03587 * 303.01951 * 6 5 3 24 24 C 1.53096 * 109.16009 * 56.97941 * 23 6 5 25 25 O 1.42895 * 109.48192 * 294.99812 * 3 2 1 26 26 H 1.09008 * 109.47475 * 299.99680 * 1 2 3 27 27 H 1.09000 * 109.47354 * 59.99698 * 1 2 3 28 28 H 1.08998 * 109.47619 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47461 * 240.00299 * 2 1 3 30 30 H 1.09004 * 109.47090 * 119.99861 * 2 1 3 31 31 H 1.08996 * 109.52357 * 57.68481 * 5 3 2 32 32 H 1.09001 * 109.52061 * 297.49903 * 5 3 2 33 33 H 1.09002 * 109.47045 * 64.55435 * 8 6 5 34 34 H 1.09001 * 109.47375 * 304.55360 * 8 6 5 35 35 H 0.97000 * 119.99708 * 359.97438 * 11 9 8 36 36 H 1.09002 * 109.47391 * 59.99686 * 12 11 9 37 37 H 1.09001 * 109.46813 * 299.99742 * 12 11 9 38 38 H 1.09001 * 109.47194 * 299.99493 * 13 12 11 39 39 H 1.08992 * 109.47399 * 59.99666 * 13 12 11 40 40 H 1.09001 * 109.47109 * 299.99380 * 14 13 12 41 41 H 1.09002 * 109.47508 * 59.99571 * 14 13 12 42 42 H 0.97000 * 119.99425 * 180.02562 * 18 17 15 43 43 H 1.08991 * 109.52076 * 176.88334 * 23 6 5 44 44 H 1.08997 * 109.51957 * 297.07443 * 23 6 5 45 45 H 1.09002 * 109.48166 * 62.37970 * 24 23 6 46 46 H 1.09004 * 109.47823 * 182.39778 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6057 1.9816 0.8420 5 6 3.5658 1.4446 0.1244 6 6 4.0734 2.8885 0.0632 7 1 3.6812 3.4505 0.9108 8 6 5.6027 2.8958 0.1077 9 6 6.0969 4.3185 0.1602 10 8 5.3040 5.2362 0.1623 11 7 7.4201 4.5710 0.2049 12 6 7.9005 5.9540 0.2565 13 6 9.4299 5.9613 0.2996 14 6 9.9316 7.4057 0.3542 15 6 11.4380 7.4129 0.3973 16 1 11.9830 6.4805 0.3873 17 6 12.1205 8.6098 0.4496 18 7 11.4568 9.7451 0.4614 19 14 13.9877 8.6188 0.5024 20 1 14.5205 7.9548 -0.7144 21 1 14.4747 10.0205 0.5554 22 1 14.4523 7.8878 1.7087 23 6 3.5957 3.5311 -1.2427 24 6 2.0686 3.4484 -1.3143 25 8 1.6620 2.0816 -1.2209 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9988 0.8712 -0.6952 32 1 3.8543 0.9971 1.0755 33 1 5.9945 2.4078 -0.7847 34 1 5.9429 2.3600 0.9939 35 1 8.0542 3.8370 0.2036 36 1 7.5091 6.4416 1.1494 37 1 7.5598 6.4903 -0.6292 38 1 9.7710 5.4249 1.1852 39 1 9.8209 5.4739 -0.5934 40 1 9.5906 7.9424 -0.5311 41 1 9.5406 7.8927 1.2475 42 1 11.9370 10.5872 0.4978 43 1 3.9055 4.5757 -1.2693 44 1 4.0293 2.9998 -2.0900 45 1 1.6349 4.0139 -0.4895 46 1 1.7259 3.8659 -2.2610 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358893032.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:54 Heat of formation + Delta-G solvation = -130.489675 kcal Electronic energy + Delta-G solvation = -22015.613806 eV Core-core repulsion = 18710.402571 eV Total energy + Delta-G solvation = -3305.211234 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.25755 -39.10819 -35.64950 -34.65300 -34.22005 -33.33091 -31.34256 -30.04412 -29.16606 -26.62130 -24.55768 -23.70426 -22.87111 -21.37928 -20.74100 -20.35335 -19.67453 -16.94812 -16.62497 -16.45167 -16.09994 -15.75285 -15.41551 -14.84971 -14.69535 -14.46041 -14.25579 -13.96321 -13.76187 -13.38896 -13.04830 -12.77643 -12.29648 -12.16114 -12.02390 -11.88003 -11.83552 -11.58293 -11.37376 -11.28869 -11.04641 -10.90028 -10.76280 -10.68189 -10.63364 -10.42003 -9.88852 -9.86773 -9.62093 -9.31127 -9.13085 -8.77613 -8.38840 -6.03525 -4.06862 2.77522 3.30537 3.35112 3.36044 3.39752 3.57686 4.34209 4.42711 4.46917 4.58423 4.69772 4.84347 4.88486 5.03458 5.10260 5.11953 5.22032 5.27499 5.32057 5.36621 5.37934 5.56719 5.58426 5.62787 5.66137 5.72010 5.75584 5.75707 5.81513 5.89267 6.02139 6.13537 6.14410 6.20028 6.49151 6.57372 6.81443 6.98243 7.07789 7.60969 7.70489 7.73673 7.94884 8.35135 8.40452 8.99524 9.57311 11.07678 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.058228 B = 0.002168 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.753679 B =12914.054969 C =13202.618467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C 0.091 3.909 4 H 0.056 0.944 5 C -0.146 4.146 6 C -0.072 4.072 7 H 0.079 0.921 8 C -0.137 4.137 9 C 0.506 3.494 10 O -0.543 6.543 11 N -0.728 5.728 12 C 0.116 3.884 13 C -0.121 4.121 14 C 0.024 3.976 15 C -0.524 4.524 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.894 3.106 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.156 4.156 24 C 0.064 3.936 25 O -0.381 6.381 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.398 0.602 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.262 0.738 43 H 0.095 0.905 44 H 0.064 0.936 45 H 0.049 0.951 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.680 -20.042 -0.968 27.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C 0.033 3.967 4 H 0.074 0.926 5 C -0.184 4.184 6 C -0.091 4.091 7 H 0.097 0.903 8 C -0.177 4.177 9 C 0.292 3.708 10 O -0.421 6.421 11 N -0.378 5.378 12 C -0.007 4.007 13 C -0.159 4.159 14 C -0.014 4.014 15 C -0.562 4.562 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.532 5.532 19 Si 0.722 3.278 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.203 1.203 23 C -0.194 4.194 24 C -0.013 4.013 25 O -0.300 6.300 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.231 0.769 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.071 0.929 43 H 0.113 0.887 44 H 0.083 0.917 45 H 0.068 0.932 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -19.320 -19.256 -1.105 27.300 hybrid contribution 1.710 -0.041 0.262 1.731 sum -17.609 -19.297 -0.843 26.138 Atomic orbital electron populations 1.21718 0.95325 1.01402 1.02304 1.21549 0.96679 0.94505 1.02619 1.22106 0.93372 0.93866 0.87362 0.92558 1.22302 0.96349 0.96945 1.02781 1.20925 0.93273 0.95571 0.99348 0.90265 1.21738 0.97056 0.94603 1.04271 1.20641 0.82516 0.91386 0.76216 1.90655 1.54754 1.46934 1.49784 1.46268 1.06861 1.10098 1.74620 1.21630 0.96268 0.80914 1.01856 1.21885 0.90846 1.02333 1.00818 1.19027 0.95809 0.88930 0.97621 1.21165 0.91676 0.92328 1.51032 0.92706 1.25036 0.98507 0.95681 0.95261 1.69959 1.35572 0.97347 1.50364 0.86631 0.85627 0.76982 0.78583 1.20244 1.21249 1.20254 1.22374 0.96227 1.03706 0.97068 1.22558 0.94237 0.82547 1.01950 1.87892 1.78691 1.25051 1.38406 0.92981 0.91922 0.92881 0.91159 0.90745 0.90924 0.90920 0.88984 0.88961 0.76857 0.91860 0.91855 0.92771 0.92756 0.96290 0.96300 0.92857 0.88653 0.91707 0.93243 0.89003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.81 37.15 0.36 -0.67 16 2 C -0.12 -0.82 5.64 -26.73 -0.15 -0.97 16 3 C 0.09 0.78 2.64 -26.68 -0.07 0.71 16 4 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 5 C -0.15 -1.16 4.70 -26.59 -0.13 -1.28 16 6 C -0.07 -0.71 1.92 -90.44 -0.17 -0.88 16 7 H 0.08 0.89 7.96 -51.93 -0.41 0.48 16 8 C -0.14 -1.29 5.18 -27.88 -0.14 -1.43 16 9 C 0.51 6.95 7.57 -10.98 -0.08 6.86 16 10 O -0.54 -9.46 13.98 5.56 0.08 -9.38 16 11 N -0.73 -9.98 5.56 -60.29 -0.33 -10.32 16 12 C 0.12 2.02 5.67 -4.04 -0.02 1.99 16 13 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 14 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 15 C -0.52 -14.59 9.11 -34.44 -0.31 -14.91 16 16 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 19 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 C -0.16 -1.68 5.12 -26.59 -0.14 -1.81 16 24 C 0.06 0.64 6.84 37.21 0.25 0.89 16 25 O -0.38 -4.01 9.94 -35.23 -0.35 -4.36 16 26 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 27 H 0.06 0.50 7.82 -51.93 -0.41 0.09 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.40 4.33 8.47 -40.82 -0.35 3.98 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.10 1.25 6.03 -51.93 -0.31 0.93 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 366.44 15.07 5.52 5.52 Total: -1.00 -31.89 366.44 -8.98 -40.87 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -8.63 Total: -0.72 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -0.98 Total: -12.00 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.40 Total: -36.35 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: -0.27 Total: -13.74 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.89 -8.98 -40.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358893032.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.618 kcal (2) G-P(sol) polarization free energy of solvation -31.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds