Wall clock time and date at job start Tue Mar 31 2020 05:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47047 * 2 1 4 4 C 1.53007 * 109.46646 * 119.99375 * 2 1 3 5 5 C 1.52995 * 109.47035 * 65.00125 * 4 2 1 6 6 O 1.42900 * 109.47171 * 180.02562 * 5 4 2 7 7 C 1.42903 * 114.00053 * 180.02562 * 6 5 4 8 8 H 1.08991 * 110.78297 * 26.75430 * 7 6 5 9 9 C 1.55168 * 110.71467 * 263.51760 * 7 6 5 10 10 C 1.55125 * 101.48096 * 205.96909 * 9 7 6 11 11 N 1.47419 * 104.72641 * 37.30017 * 10 9 7 12 12 C 1.34777 * 125.65026 * 155.81817 * 11 10 9 13 13 O 1.21283 * 119.99750 * 179.69006 * 12 11 10 14 14 C 1.50694 * 120.00104 * 359.68576 * 12 11 10 15 15 C 1.52997 * 109.47460 * 180.02562 * 14 12 11 16 16 C 1.50694 * 109.47460 * 180.02562 * 15 14 12 17 17 H 1.08002 * 120.00179 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00472 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99350 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00608 * 179.97438 * 18 16 15 21 21 H 1.48490 * 109.47339 * 179.97438 * 20 18 16 22 22 H 1.48493 * 109.47239 * 300.00306 * 20 18 16 23 23 H 1.48504 * 109.46636 * 59.99865 * 20 18 16 24 24 C 1.47025 * 108.69913 * 335.54766 * 11 10 9 25 25 H 1.08997 * 109.47414 * 300.00884 * 1 2 3 26 26 H 1.09004 * 109.46381 * 60.00252 * 1 2 3 27 27 H 1.08996 * 109.47442 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47414 * 239.99116 * 2 1 3 29 29 H 1.09008 * 109.46916 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47325 * 299.99171 * 3 2 1 31 31 H 1.08997 * 109.47736 * 59.99313 * 3 2 1 32 32 H 1.08996 * 109.46900 * 305.00040 * 4 2 1 33 33 H 1.09000 * 109.46831 * 185.00069 * 4 2 1 34 34 H 1.09008 * 109.47090 * 59.99839 * 5 4 2 35 35 H 1.09000 * 109.47265 * 299.99678 * 5 4 2 36 36 H 1.08995 * 111.00541 * 324.20912 * 9 7 6 37 37 H 1.08998 * 111.00146 * 88.02195 * 9 7 6 38 38 H 1.09000 * 110.49720 * 278.45100 * 10 9 7 39 39 H 1.09001 * 110.34022 * 156.06163 * 10 9 7 40 40 H 1.09003 * 109.47519 * 60.00004 * 14 12 11 41 41 H 1.08999 * 109.47517 * 300.00283 * 14 12 11 42 42 H 1.09005 * 109.46800 * 60.00471 * 15 14 12 43 43 H 1.08998 * 109.47382 * 300.00270 * 15 14 12 44 44 H 0.97005 * 119.99661 * 179.97438 * 19 18 16 45 45 H 1.09002 * 109.88010 * 120.70933 * 24 11 10 46 46 H 1.09005 * 109.88071 * 241.71656 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6352 -2.1953 1.1882 6 8 2.1109 -2.8688 2.3554 7 6 1.7849 -4.2595 2.3975 8 1 1.6648 -4.6592 1.3907 9 6 0.5032 -4.4975 3.2391 10 6 0.7141 -5.9583 3.7165 11 7 2.1611 -6.0615 3.9792 12 6 2.7470 -6.9420 4.8145 13 8 3.9523 -6.9401 4.9495 14 6 1.9045 -7.9287 5.5810 15 6 2.8090 -8.8051 6.4497 16 6 1.9666 -9.7923 7.2157 17 1 0.8933 -9.7942 7.0954 18 6 2.5658 -10.6925 8.0711 19 7 3.8727 -10.6898 8.2180 20 14 1.5216 -11.9157 9.0212 21 1 2.3994 -12.7663 9.8642 22 1 0.5636 -11.1817 9.8865 23 1 0.7714 -12.7718 8.0674 24 6 2.8597 -5.0490 3.1739 25 1 -0.3634 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1301 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 1.6053 -0.2615 2.1370 33 1 3.1263 -0.6443 1.2954 34 1 2.0699 -2.6550 0.3005 35 1 0.5489 -2.2722 1.1423 36 1 0.4569 -3.8098 4.0835 37 1 -0.3909 -4.4148 2.6212 38 1 0.4189 -6.6609 2.9372 39 1 0.1487 -6.1439 4.6297 40 1 1.3532 -8.5567 4.8811 41 1 1.2019 -7.3900 6.2168 42 1 3.3599 -8.1769 7.1498 43 1 3.5119 -9.3439 5.8144 44 1 4.2943 -11.3229 8.8201 45 1 3.4155 -4.3754 3.8262 46 1 3.5414 -5.5358 2.4764 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360344156.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:07 Heat of formation + Delta-G solvation = -110.191768 kcal Electronic energy + Delta-G solvation = -21960.544932 eV Core-core repulsion = 18656.213882 eV Total energy + Delta-G solvation = -3304.331051 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.91014 -38.52207 -37.09330 -35.81815 -33.44991 -31.43302 -30.61859 -29.78339 -28.41099 -27.60189 -25.65147 -23.49444 -23.38141 -21.63724 -20.93656 -20.26555 -18.71906 -17.41089 -16.98118 -16.18282 -15.87242 -15.50498 -15.23255 -14.89387 -14.50451 -14.40154 -14.28275 -13.87243 -13.68229 -13.15980 -12.80438 -12.59545 -12.53750 -12.38746 -12.16044 -12.07600 -11.85817 -11.83351 -11.50712 -11.21004 -11.12583 -11.05961 -11.01081 -10.90458 -10.83717 -10.59881 -9.92928 -9.74583 -9.63045 -9.17558 -9.01283 -8.41011 -8.29102 -5.93936 -3.98476 2.99311 3.24705 3.35746 3.40289 3.42016 3.56654 4.33893 4.40090 4.43290 4.47803 4.49829 4.57600 4.77803 4.83871 5.01756 5.05939 5.11007 5.20835 5.23310 5.30677 5.40291 5.40700 5.42742 5.46428 5.53249 5.56332 5.61416 5.62669 5.74984 5.78579 5.88727 5.90726 5.92996 5.97351 6.23422 6.25444 6.53583 6.90784 6.98897 7.76107 7.84560 7.88429 8.09406 8.40249 8.75637 9.09678 9.64727 11.16998 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.052093 B = 0.002299 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.371177 B =12177.160274 C =12525.478653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.095 4.095 3 C -0.147 4.147 4 C -0.115 4.115 5 C 0.060 3.940 6 O -0.374 6.374 7 C 0.079 3.921 8 H 0.077 0.923 9 C -0.154 4.154 10 C 0.103 3.897 11 N -0.630 5.630 12 C 0.527 3.473 13 O -0.531 6.531 14 C -0.123 4.123 15 C 0.036 3.964 16 C -0.527 4.527 17 H 0.055 0.945 18 C 0.058 3.942 19 N -0.889 5.889 20 Si 0.894 3.106 21 H -0.287 1.287 22 H -0.277 1.277 23 H -0.277 1.277 24 C 0.109 3.891 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.024 0.976 43 H 0.024 0.976 44 H 0.261 0.739 45 H 0.076 0.924 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.470 21.388 -18.582 29.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.114 4.114 3 C -0.204 4.204 4 C -0.153 4.153 5 C -0.016 4.016 6 O -0.292 6.292 7 C 0.021 3.979 8 H 0.095 0.905 9 C -0.192 4.192 10 C -0.020 4.020 11 N -0.368 5.368 12 C 0.318 3.682 13 O -0.406 6.406 14 C -0.163 4.163 15 C -0.001 4.001 16 C -0.566 4.566 17 H 0.074 0.926 18 C -0.144 4.144 19 N -0.528 5.528 20 Si 0.722 3.278 21 H -0.213 1.213 22 H -0.203 1.203 23 H -0.203 1.203 24 C -0.014 4.014 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.042 0.958 43 H 0.042 0.958 44 H 0.071 0.929 45 H 0.095 0.905 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.494 21.322 -18.193 29.288 hybrid contribution -0.759 -0.788 0.269 1.126 sum -9.253 20.535 -17.924 28.785 Atomic orbital electron populations 1.21933 0.95124 1.01910 1.01945 1.21058 0.96008 0.96429 0.97857 1.21826 1.01138 0.95590 1.01888 1.21591 1.02033 0.93140 0.98487 1.22641 0.98219 0.93122 0.87639 1.87924 1.78383 1.20575 1.42366 1.23067 0.94274 0.81965 0.98613 0.90482 1.23329 0.97914 0.96935 1.01045 1.22266 0.82407 0.95812 1.01539 1.48653 1.07449 1.35655 1.45093 1.21362 0.89033 0.80103 0.77735 1.90682 1.15234 1.70506 1.64132 1.21851 0.99604 0.96098 0.98756 1.18916 0.93978 0.93354 0.93871 1.21173 0.93307 1.16998 1.25097 0.92647 1.25031 0.94912 0.97549 0.96919 1.69993 1.08777 1.36797 1.37224 0.86638 0.80110 0.81169 0.79918 1.21289 1.20255 1.20270 1.21710 0.94321 0.90565 0.94811 0.92461 0.92662 0.92495 0.91086 0.92526 0.92593 0.92518 0.90983 0.90993 0.93356 0.93040 0.89503 0.89989 0.91291 0.89781 0.90269 0.90255 0.95779 0.95792 0.92892 0.90534 0.91182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 8.95 37.16 0.33 -0.46 16 2 C -0.09 -0.54 2.92 -90.62 -0.26 -0.80 16 3 C -0.15 -0.77 9.19 37.16 0.34 -0.43 16 4 C -0.11 -0.82 5.05 -26.73 -0.14 -0.95 16 5 C 0.06 0.47 5.53 37.16 0.21 0.68 16 6 O -0.37 -4.06 10.07 -35.23 -0.35 -4.42 16 7 C 0.08 0.82 3.44 -24.89 -0.09 0.74 16 8 H 0.08 0.67 7.83 -51.93 -0.41 0.26 16 9 C -0.15 -1.45 6.82 -24.46 -0.17 -1.61 16 10 C 0.10 1.18 6.70 -2.41 -0.02 1.16 16 11 N -0.63 -9.98 3.32 -170.39 -0.57 -10.55 16 12 C 0.53 10.90 7.85 -10.99 -0.09 10.81 16 13 O -0.53 -13.30 16.31 5.55 0.09 -13.21 16 14 C -0.12 -2.60 4.64 -27.89 -0.13 -2.73 16 15 C 0.04 1.00 4.26 -27.89 -0.12 0.88 16 16 C -0.53 -15.16 9.11 -34.44 -0.31 -15.47 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -27.74 13.29 55.43 0.74 -27.00 16 20 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 24 C 0.11 1.53 6.64 -3.07 -0.02 1.51 16 25 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 27 H 0.06 0.29 6.56 -51.93 -0.34 -0.05 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.30 8.14 -51.92 -0.42 -0.13 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.34 8.12 -51.92 -0.42 -0.08 16 35 H 0.05 0.35 6.56 -51.93 -0.34 0.01 16 36 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.93 7.48 -51.93 -0.39 0.54 16 40 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 41 H 0.08 1.53 7.85 -51.93 -0.41 1.13 16 42 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 43 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 44 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 45 H 0.08 1.19 8.06 -51.93 -0.42 0.77 16 46 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 370.97 15.07 5.59 5.59 Total: -1.00 -34.49 370.97 -8.68 -43.17 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -8.60 Total: -5.32 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -0.55 Total: -5.08 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.17 Total: -37.55 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.26 Total: -17.63 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.49 -8.68 -43.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360344156.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.025 kcal (2) G-P(sol) polarization free energy of solvation -34.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds