Wall clock time and date at job start Tue Mar 31 2020 05:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47047 * 2 1 4 4 C 1.53007 * 109.46646 * 119.99375 * 2 1 3 5 5 C 1.52995 * 109.47035 * 65.00125 * 4 2 1 6 6 O 1.42900 * 109.47171 * 180.02562 * 5 4 2 7 7 C 1.42903 * 114.00053 * 180.02562 * 6 5 4 8 8 H 1.08991 * 110.78297 * 26.75430 * 7 6 5 9 9 C 1.55168 * 110.71467 * 263.51760 * 7 6 5 10 10 C 1.55125 * 101.48096 * 205.96909 * 9 7 6 11 11 N 1.47419 * 104.72641 * 37.30017 * 10 9 7 12 12 C 1.34777 * 125.65026 * 155.81817 * 11 10 9 13 13 O 1.21283 * 119.99750 * 179.69006 * 12 11 10 14 14 C 1.50694 * 120.00104 * 359.68576 * 12 11 10 15 15 C 1.52997 * 109.47460 * 180.02562 * 14 12 11 16 16 C 1.50694 * 109.47460 * 180.02562 * 15 14 12 17 17 H 1.08002 * 120.00179 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00472 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99350 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00608 * 179.97438 * 18 16 15 21 21 H 1.48490 * 109.47339 * 179.97438 * 20 18 16 22 22 H 1.48493 * 109.47239 * 300.00306 * 20 18 16 23 23 H 1.48504 * 109.46636 * 59.99865 * 20 18 16 24 24 C 1.47025 * 108.69913 * 335.54766 * 11 10 9 25 25 H 1.08997 * 109.47414 * 300.00884 * 1 2 3 26 26 H 1.09004 * 109.46381 * 60.00252 * 1 2 3 27 27 H 1.08996 * 109.47442 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47414 * 239.99116 * 2 1 3 29 29 H 1.09008 * 109.46916 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47325 * 299.99171 * 3 2 1 31 31 H 1.08997 * 109.47736 * 59.99313 * 3 2 1 32 32 H 1.08996 * 109.46900 * 305.00040 * 4 2 1 33 33 H 1.09000 * 109.46831 * 185.00069 * 4 2 1 34 34 H 1.09008 * 109.47090 * 59.99839 * 5 4 2 35 35 H 1.09000 * 109.47265 * 299.99678 * 5 4 2 36 36 H 1.08995 * 111.00541 * 324.20912 * 9 7 6 37 37 H 1.08998 * 111.00146 * 88.02195 * 9 7 6 38 38 H 1.09000 * 110.49720 * 278.45100 * 10 9 7 39 39 H 1.09001 * 110.34022 * 156.06163 * 10 9 7 40 40 H 1.09003 * 109.47519 * 60.00004 * 14 12 11 41 41 H 1.08999 * 109.47517 * 300.00283 * 14 12 11 42 42 H 1.09005 * 109.46800 * 60.00471 * 15 14 12 43 43 H 1.08998 * 109.47382 * 300.00270 * 15 14 12 44 44 H 0.97005 * 119.99661 * 179.97438 * 19 18 16 45 45 H 1.09002 * 109.88010 * 120.70933 * 24 11 10 46 46 H 1.09005 * 109.88071 * 241.71656 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6352 -2.1953 1.1882 6 8 2.1109 -2.8688 2.3554 7 6 1.7849 -4.2595 2.3975 8 1 1.6648 -4.6592 1.3907 9 6 0.5032 -4.4975 3.2391 10 6 0.7141 -5.9583 3.7165 11 7 2.1611 -6.0615 3.9792 12 6 2.7470 -6.9420 4.8145 13 8 3.9523 -6.9401 4.9495 14 6 1.9045 -7.9287 5.5810 15 6 2.8090 -8.8051 6.4497 16 6 1.9666 -9.7923 7.2157 17 1 0.8933 -9.7942 7.0954 18 6 2.5658 -10.6925 8.0711 19 7 3.8727 -10.6898 8.2180 20 14 1.5216 -11.9157 9.0212 21 1 2.3994 -12.7663 9.8642 22 1 0.5636 -11.1817 9.8865 23 1 0.7714 -12.7718 8.0674 24 6 2.8597 -5.0490 3.1739 25 1 -0.3634 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1301 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 1.6053 -0.2615 2.1370 33 1 3.1263 -0.6443 1.2954 34 1 2.0699 -2.6550 0.3005 35 1 0.5489 -2.2722 1.1423 36 1 0.4569 -3.8098 4.0835 37 1 -0.3909 -4.4148 2.6212 38 1 0.4189 -6.6609 2.9372 39 1 0.1487 -6.1439 4.6297 40 1 1.3532 -8.5567 4.8811 41 1 1.2019 -7.3900 6.2168 42 1 3.3599 -8.1769 7.1498 43 1 3.5119 -9.3439 5.8144 44 1 4.2943 -11.3229 8.8201 45 1 3.4155 -4.3754 3.8262 46 1 3.5414 -5.5358 2.4764 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360344156.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:06 Heat of formation + Delta-G solvation = -132.035271 kcal Electronic energy + Delta-G solvation = -21961.492138 eV Core-core repulsion = 18656.213882 eV Total energy + Delta-G solvation = -3305.278256 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.16460 -39.58768 -37.98168 -36.66416 -35.59304 -33.19466 -31.94884 -30.53277 -29.46287 -28.00259 -27.54975 -24.78295 -24.07116 -23.14587 -22.07546 -20.78399 -20.15799 -18.86181 -18.22654 -17.66475 -16.91075 -16.60999 -16.56855 -16.27396 -15.85526 -15.39692 -15.21771 -14.65916 -14.60726 -14.36901 -14.18059 -13.84713 -13.65222 -13.37955 -13.18552 -13.12134 -12.95339 -12.79460 -12.77212 -12.52175 -12.43858 -12.14714 -11.94550 -11.79264 -11.68303 -11.59684 -11.49336 -11.47150 -11.33365 -10.81269 -10.56269 -10.46639 -9.71910 -8.17813 -6.32543 1.42348 1.47474 1.55183 1.62756 1.83622 2.43250 2.69852 3.14855 3.42927 3.55783 3.92714 3.93437 3.97995 4.04088 4.06752 4.27431 4.31608 4.40071 4.44613 4.47369 4.51091 4.57806 4.63556 4.69191 4.78949 4.80571 4.84167 4.92052 4.96986 5.02528 5.03784 5.09472 5.14643 5.17757 5.32791 5.34860 5.46860 5.49174 5.51799 5.60201 5.83744 6.16118 6.27303 6.43349 6.85349 7.18579 7.37718 8.94846 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.052093 B = 0.002299 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.371177 B =12177.160274 C =12525.478653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 C -0.148 4.148 4 C -0.113 4.113 5 C 0.057 3.943 6 O -0.396 6.396 7 C 0.090 3.910 8 H 0.104 0.896 9 C -0.142 4.142 10 C 0.092 3.908 11 N -0.622 5.622 12 C 0.522 3.478 13 O -0.592 6.592 14 C -0.109 4.109 15 C 0.042 3.958 16 C -0.544 4.544 17 H 0.078 0.922 18 C -0.009 4.009 19 N -0.938 5.938 20 Si 0.977 3.023 21 H -0.288 1.288 22 H -0.262 1.262 23 H -0.261 1.261 24 C 0.101 3.899 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.120 0.880 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.106 0.894 41 H 0.103 0.897 42 H -0.020 1.020 43 H -0.018 1.018 44 H 0.263 0.737 45 H 0.052 0.948 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.187 21.640 -19.978 32.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.110 4.110 3 C -0.205 4.205 4 C -0.151 4.151 5 C -0.019 4.019 6 O -0.316 6.316 7 C 0.031 3.969 8 H 0.122 0.878 9 C -0.180 4.180 10 C -0.029 4.029 11 N -0.357 5.357 12 C 0.314 3.686 13 O -0.473 6.473 14 C -0.148 4.148 15 C 0.004 3.996 16 C -0.581 4.581 17 H 0.096 0.904 18 C -0.206 4.206 19 N -0.578 5.578 20 Si 0.801 3.199 21 H -0.214 1.214 22 H -0.186 1.186 23 H -0.185 1.185 24 C -0.022 4.022 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.138 0.862 38 H 0.114 0.886 39 H 0.110 0.890 40 H 0.124 0.876 41 H 0.121 0.879 42 H -0.002 1.002 43 H 0.000 1.000 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.283 21.621 -19.636 31.685 hybrid contribution 0.434 -0.765 0.641 1.088 sum -11.850 20.856 -18.995 30.598 Atomic orbital electron populations 1.21929 0.94497 1.02268 1.02134 1.21040 0.96480 0.96349 0.97140 1.21837 1.00990 0.95545 1.02168 1.21585 1.01331 0.93185 0.99007 1.22827 0.99266 0.92951 0.86871 1.87906 1.79009 1.20731 1.43927 1.22999 0.92861 0.81625 0.99386 0.87795 1.23316 0.98708 0.94920 1.01026 1.22708 0.79171 0.98088 1.02977 1.48540 1.09937 1.34079 1.43190 1.21203 0.88120 0.80899 0.78424 1.90654 1.17624 1.72493 1.66480 1.21591 0.98546 0.95935 0.98771 1.18704 0.94106 0.93435 0.93358 1.21666 0.94450 1.17004 1.25019 0.90365 1.26190 0.96247 1.00019 0.98163 1.70187 1.11298 1.38042 1.38294 0.85322 0.78107 0.78134 0.78364 1.21393 1.18625 1.18536 1.21860 0.95725 0.90191 0.94401 0.92777 0.92010 0.92025 0.90605 0.92832 0.91793 0.92764 0.91750 0.92129 0.92390 0.91314 0.90473 0.86151 0.88639 0.88982 0.87583 0.87879 1.00163 0.99968 0.92849 0.93001 0.91680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 8.95 71.98 0.64 -0.58 16 2 C -0.09 -0.88 2.92 -10.79 -0.03 -0.91 16 3 C -0.15 -1.38 9.19 71.98 0.66 -0.72 16 4 C -0.11 -1.48 5.05 30.59 0.15 -1.32 16 5 C 0.06 0.75 5.53 71.98 0.40 1.15 16 6 O -0.40 -7.96 10.07 -148.98 -1.50 -9.46 16 7 C 0.09 1.64 3.44 31.78 0.11 1.75 16 8 H 0.10 1.38 7.83 -2.39 -0.02 1.37 16 9 C -0.14 -2.14 6.82 32.07 0.22 -1.92 16 10 C 0.09 1.79 6.70 86.93 0.58 2.38 16 11 N -0.62 -19.26 3.32 -811.38 -2.70 -21.96 16 12 C 0.52 22.13 7.85 87.66 0.69 22.82 16 13 O -0.59 -31.61 16.31 -3.04 -0.05 -31.66 16 14 C -0.11 -4.58 4.64 29.85 0.14 -4.44 16 15 C 0.04 2.39 4.26 29.85 0.13 2.52 16 16 C -0.54 -31.39 9.11 25.60 0.23 -31.16 16 17 H 0.08 4.06 7.74 -2.91 -0.02 4.04 16 18 C -0.01 -0.52 5.46 84.66 0.46 -0.06 16 19 N -0.94 -60.51 13.29 21.45 0.28 -60.22 16 20 Si 0.98 44.61 29.54 68.60 2.03 46.63 16 21 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 22 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 23 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 24 C 0.10 2.83 6.64 86.73 0.58 3.41 16 25 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.06 0.44 6.56 -2.39 -0.02 0.43 16 28 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.06 0.67 8.12 -2.38 -0.02 0.65 16 35 H 0.07 0.69 6.56 -2.39 -0.02 0.67 16 36 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.09 1.70 7.48 -2.39 -0.02 1.68 16 40 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 41 H 0.10 3.82 7.85 -2.39 -0.02 3.81 16 42 H -0.02 -1.31 8.10 -2.38 -0.02 -1.33 16 43 H -0.02 -1.18 8.10 -2.39 -0.02 -1.20 16 44 H 0.26 15.88 8.31 -92.70 -0.77 15.11 16 45 H 0.05 1.70 8.06 -2.39 -0.02 1.68 16 46 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 Total: -1.00 -79.92 370.97 3.94 -75.98 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: 0.91 Total: 7.77 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: 4.96 Total: -7.08 kcal Atomic # 7 Polarization: -79.77 SS G_CDS: -2.41 Total: -82.18 kcal Atomic # 8 Polarization: -39.58 SS G_CDS: -1.55 Total: -41.13 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -79.92 3.94 -75.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360344156.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.052 kcal (2) G-P(sol) polarization free energy of solvation -79.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds