Wall clock time and date at job start Tue Mar 31 2020 06:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47166 * 2 1 4 4 C 1.53004 * 109.46888 * 239.99834 * 2 1 3 5 5 C 1.50698 * 109.46941 * 60.00312 * 4 2 1 6 6 H 1.08006 * 120.00121 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99946 * 179.97438 * 5 4 2 8 8 N 1.31521 * 120.00188 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 120.00175 * 359.97438 * 7 5 4 10 10 H 1.48506 * 109.46859 * 90.00113 * 9 7 5 11 11 H 1.48501 * 109.47264 * 210.00025 * 9 7 5 12 12 H 1.48499 * 109.46998 * 330.00148 * 9 7 5 13 13 C 1.53001 * 109.47029 * 120.00469 * 2 1 3 14 14 N 1.46501 * 109.47082 * 299.99765 * 13 2 1 15 15 C 1.34777 * 120.00230 * 180.02562 * 14 13 2 16 16 O 1.21274 * 119.99830 * 359.97438 * 15 14 13 17 17 C 1.50705 * 120.00004 * 180.02562 * 15 14 13 18 18 C 1.52994 * 109.46901 * 174.39324 * 17 15 14 19 19 C 1.53002 * 109.46958 * 180.64998 * 18 17 15 20 20 O 1.42902 * 109.47034 * 300.64549 * 18 17 15 21 21 C 1.53001 * 109.47532 * 60.64837 * 18 17 15 22 22 C 1.52994 * 117.49793 * 248.62181 * 21 18 17 23 23 C 1.52996 * 60.00302 * 252.51045 * 22 21 18 24 24 H 1.09005 * 109.46802 * 299.99653 * 1 2 3 25 25 H 1.08996 * 109.47529 * 59.99935 * 1 2 3 26 26 H 1.09004 * 109.47382 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46878 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47384 * 300.00107 * 3 2 1 29 29 H 1.09005 * 109.46976 * 60.00454 * 3 2 1 30 30 H 1.09005 * 109.47120 * 180.02562 * 4 2 1 31 31 H 1.09002 * 109.47309 * 300.00509 * 4 2 1 32 32 H 0.96993 * 120.00169 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47067 * 180.02562 * 13 2 1 34 34 H 1.08997 * 109.47831 * 59.99708 * 13 2 1 35 35 H 0.97001 * 119.99897 * 0.27656 * 14 13 2 36 36 H 1.09008 * 109.46587 * 294.38871 * 17 15 14 37 37 H 1.08996 * 109.47303 * 54.38462 * 17 15 14 38 38 H 1.08997 * 109.47041 * 64.79773 * 19 18 17 39 39 H 1.08997 * 109.47213 * 184.79414 * 19 18 17 40 40 H 1.08997 * 109.46890 * 304.79696 * 19 18 17 41 41 H 0.96698 * 113.99648 * 60.00590 * 20 18 17 42 42 H 1.09000 * 115.54606 * 34.33195 * 21 18 17 43 43 H 1.08998 * 117.50165 * 359.97438 * 22 21 18 44 44 H 1.09005 * 117.50046 * 145.02008 * 22 21 18 45 45 H 1.08996 * 117.50458 * 252.51502 * 23 22 21 46 46 H 1.09006 * 117.50115 * 107.48827 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8711 -0.4816 -3.7319 8 7 1.4323 0.1381 -4.8058 9 14 2.9461 -1.9997 -3.9034 10 1 2.0883 -3.2111 -3.9490 11 1 3.7380 -1.9065 -5.1562 12 1 3.8665 -2.0882 -2.7414 13 6 2.0400 -0.7214 1.2492 14 7 1.5517 -0.0308 2.4454 15 6 1.8776 -0.4910 3.6695 16 8 2.5748 -1.4771 3.7807 17 6 1.3748 0.2191 4.9000 18 6 1.7671 -0.5787 6.1452 19 6 1.2426 0.1338 7.3935 20 8 1.1997 -1.8881 6.0704 21 6 3.2914 -0.6870 6.2223 22 6 3.9134 -2.0677 6.0042 23 6 3.8861 -1.4536 7.4053 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9562 0.8901 30 1 3.1300 -0.7217 -1.2491 31 1 1.6765 -1.7490 -1.2493 32 1 1.6672 -0.1929 -5.6868 33 1 3.1300 -0.7210 1.2494 34 1 1.6767 -1.7490 1.2492 35 1 0.9907 0.7555 2.3564 36 1 1.8172 1.2140 4.9516 37 1 0.2894 0.3062 4.8512 38 1 0.1528 0.1356 7.3799 39 1 1.5940 -0.3874 8.2839 40 1 1.6075 1.1608 7.4059 41 1 1.4888 -2.3986 5.3017 42 1 3.8433 0.1779 5.8544 43 1 3.2367 -2.8989 5.8062 44 1 4.8748 -2.1114 5.4925 45 1 4.8295 -1.0933 7.8154 46 1 3.1915 -1.8808 8.1287 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360429206.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:19 Heat of formation + Delta-G solvation = -84.356226 kcal Electronic energy + Delta-G solvation = -23347.519712 eV Core-core repulsion = 20044.308975 eV Total energy + Delta-G solvation = -3303.210738 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.45464 -38.60885 -37.05364 -35.03324 -33.71586 -32.43603 -31.95989 -28.76876 -27.74432 -26.60369 -25.95911 -23.54204 -22.42408 -22.21449 -20.48947 -19.91238 -18.34106 -17.18119 -17.00386 -16.62045 -16.22188 -15.68806 -15.13257 -14.49694 -14.28867 -13.99169 -13.75771 -13.51978 -12.94345 -12.85764 -12.76324 -12.74187 -12.49293 -12.29926 -12.25779 -12.00196 -11.34938 -11.27906 -11.16268 -11.15831 -11.03940 -10.65331 -10.53249 -10.50092 -10.32993 -10.01039 -9.94430 -9.79849 -9.70265 -9.37365 -9.02692 -8.84921 -8.56227 -6.06952 -4.04488 2.68143 3.29294 3.31682 3.37610 3.41121 3.78270 4.11910 4.43095 4.49832 4.58453 4.70420 4.99233 5.02397 5.19481 5.25426 5.26233 5.33547 5.36573 5.45303 5.48719 5.59423 5.61470 5.63617 5.71926 5.97193 6.00585 6.06153 6.07375 6.12307 6.14061 6.22862 6.26925 6.43523 6.55158 6.64525 6.86049 6.97434 7.01200 7.16330 7.32835 7.59544 7.65476 7.76504 8.30709 8.49936 8.96866 9.55684 11.05789 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.030814 B = 0.003440 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.452973 B = 8138.102933 C = 8617.404708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.064 4.064 3 C -0.128 4.128 4 C -0.001 4.001 5 C -0.512 4.512 6 H 0.078 0.922 7 C 0.067 3.933 8 N -0.904 5.904 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.126 3.874 14 N -0.720 5.720 15 C 0.508 3.492 16 O -0.541 6.541 17 C -0.170 4.170 18 C 0.179 3.821 19 C -0.136 4.136 20 O -0.564 6.564 21 C -0.172 4.172 22 C -0.138 4.138 23 C -0.186 4.186 24 H 0.031 0.969 25 H 0.072 0.928 26 H 0.047 0.953 27 H 0.046 0.954 28 H 0.072 0.928 29 H 0.031 0.969 30 H 0.018 0.982 31 H 0.013 0.987 32 H 0.263 0.737 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.399 0.601 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.386 0.614 42 H 0.100 0.900 43 H 0.097 0.903 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.622 1.378 22.547 22.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.064 4.064 3 C -0.186 4.186 4 C -0.039 4.039 5 C -0.550 4.550 6 H 0.096 0.904 7 C -0.134 4.134 8 N -0.543 5.543 9 Si 0.703 3.297 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.003 3.997 14 N -0.371 5.371 15 C 0.295 3.705 16 O -0.420 6.420 17 C -0.210 4.210 18 C 0.137 3.863 19 C -0.193 4.193 20 O -0.375 6.375 21 C -0.190 4.190 22 C -0.175 4.175 23 C -0.223 4.223 24 H 0.050 0.950 25 H 0.091 0.909 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.091 0.909 29 H 0.050 0.950 30 H 0.036 0.964 31 H 0.032 0.968 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.235 0.765 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.239 0.761 42 H 0.118 0.882 43 H 0.115 0.885 44 H 0.105 0.895 45 H 0.105 0.895 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.847 0.851 22.943 22.975 hybrid contribution 0.630 -0.467 -1.034 1.298 sum 1.477 0.384 21.909 21.962 Atomic orbital electron populations 1.21776 0.94792 1.01254 1.00767 1.20693 0.95816 0.95897 0.93989 1.21768 1.00404 0.95618 1.00762 1.19585 0.96238 0.95475 0.92628 1.21078 1.31863 1.13388 0.88633 0.90409 1.25001 0.95692 0.96749 0.95981 1.69901 1.45886 1.40592 0.97900 0.86857 0.81327 0.83909 0.77656 1.20350 1.21480 1.19027 1.21626 0.98823 0.95999 0.83232 1.46226 1.52835 1.32144 1.05888 1.20575 0.80265 0.84991 0.84717 1.90645 1.38097 1.26618 1.86617 1.22477 1.03551 1.01266 0.93752 1.20283 0.89902 0.83195 0.92876 1.21732 1.01510 0.99692 0.96367 1.86408 1.72009 1.26800 1.52267 1.22799 0.95221 0.97266 1.03741 1.22664 1.01779 0.96058 0.96978 1.23003 1.02067 1.05093 0.92099 0.95038 0.90875 0.93412 0.93452 0.90876 0.95038 0.96420 0.96844 0.92768 0.91876 0.91847 0.76550 0.88132 0.88341 0.91838 0.91541 0.91168 0.76090 0.88231 0.88486 0.89487 0.89494 0.88901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 8.05 37.16 0.30 -1.86 16 2 C -0.06 -1.12 0.54 -154.51 -0.08 -1.20 16 3 C -0.13 -2.14 8.05 37.15 0.30 -1.85 16 4 C 0.00 -0.03 3.11 -27.88 -0.09 -0.12 16 5 C -0.51 -13.53 8.20 -34.44 -0.28 -13.81 16 6 H 0.08 2.18 5.92 -52.48 -0.31 1.86 16 7 C 0.07 1.87 5.47 -17.82 -0.10 1.78 16 8 N -0.90 -27.04 13.96 55.43 0.77 -26.26 16 9 Si 0.87 21.33 27.47 -169.99 -4.67 16.67 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 13 C 0.13 1.99 4.56 -4.04 -0.02 1.97 16 14 N -0.72 -9.10 4.96 -60.29 -0.30 -9.40 16 15 C 0.51 6.35 7.32 -10.98 -0.08 6.27 16 16 O -0.54 -8.09 11.38 -11.39 -0.13 -8.22 16 17 C -0.17 -1.59 4.96 -27.88 -0.14 -1.72 16 18 C 0.18 1.82 0.92 -90.62 -0.08 1.74 16 19 C -0.14 -1.11 8.75 37.16 0.33 -0.79 16 20 O -0.56 -6.96 12.10 -52.18 -0.63 -7.59 16 21 C -0.17 -1.82 4.03 -90.62 -0.37 -2.19 16 22 C -0.14 -1.60 7.93 -26.74 -0.21 -1.81 16 23 C -0.19 -1.83 9.61 -26.73 -0.26 -2.09 16 24 H 0.03 0.42 6.86 -51.93 -0.36 0.07 16 25 H 0.07 1.39 6.62 -51.93 -0.34 1.05 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.07 1.39 6.62 -51.93 -0.34 1.05 16 29 H 0.03 0.42 6.87 -51.93 -0.36 0.06 16 30 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 31 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.40 4.32 6.16 -40.82 -0.25 4.06 16 36 H 0.10 0.75 8.14 -51.92 -0.42 0.32 16 37 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.55 7.13 -51.93 -0.37 0.18 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.39 4.96 5.33 45.56 0.24 5.21 16 42 H 0.10 1.05 8.11 -51.93 -0.42 0.63 16 43 H 0.10 1.20 6.30 -51.93 -0.33 0.88 16 44 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 45 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.09 0.92 7.59 -51.93 -0.39 0.52 16 LS Contribution 350.12 15.07 5.28 5.28 Total: -1.00 -29.80 350.12 -7.85 -37.65 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -7.39 Total: 7.56 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -0.78 Total: -15.68 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: 0.47 Total: -35.66 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -0.76 Total: -15.81 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.67 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.80 -7.85 -37.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360429206.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.703 kcal (2) G-P(sol) polarization free energy of solvation -29.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds