Wall clock time and date at job start Tue Mar 31 2020 05:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47132 * 2 1 4 4 C 1.53001 * 109.47097 * 174.98968 * 3 2 1 5 5 H 1.08995 * 109.47417 * 302.20170 * 4 3 2 6 6 C 1.50706 * 109.47421 * 182.19806 * 4 3 2 7 7 O 1.20828 * 120.00190 * 257.23859 * 6 4 3 8 8 O 1.34228 * 119.99705 * 77.23276 * 6 4 3 9 9 C 1.45204 * 116.99872 * 180.02562 * 8 6 4 10 10 C 1.53000 * 109.46977 * 180.02562 * 9 8 6 11 11 N 1.46907 * 109.46610 * 62.20305 * 4 3 2 12 12 C 1.46840 * 111.00516 * 55.24086 * 11 4 3 13 13 C 1.53031 * 109.52624 * 185.84053 * 12 11 4 14 14 C 1.53123 * 109.27720 * 300.81644 * 13 12 11 15 15 C 1.50698 * 109.52390 * 177.55782 * 14 13 12 16 16 H 1.08002 * 120.00025 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00204 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00264 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 119.99681 * 0.02562 * 17 15 14 20 20 H 1.48505 * 109.47590 * 89.99979 * 19 17 15 21 21 H 1.48500 * 109.47032 * 209.99751 * 19 17 15 22 22 H 1.48504 * 109.47502 * 329.99765 * 19 17 15 23 23 C 1.53123 * 109.15852 * 57.65701 * 14 13 12 24 24 C 1.46849 * 110.99515 * 179.45185 * 11 4 3 25 25 H 1.09001 * 109.46786 * 299.99799 * 1 2 3 26 26 H 1.08999 * 109.47379 * 59.99379 * 1 2 3 27 27 H 1.09001 * 109.47323 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46786 * 240.00201 * 2 1 3 29 29 H 1.08999 * 109.47379 * 120.00621 * 2 1 3 30 30 H 1.09001 * 109.47216 * 54.99578 * 3 2 1 31 31 H 1.08999 * 109.47494 * 294.99497 * 3 2 1 32 32 H 1.09003 * 109.46734 * 299.99626 * 9 8 6 33 33 H 1.08998 * 109.47085 * 59.99701 * 9 8 6 34 34 H 1.09003 * 109.46970 * 299.99343 * 10 9 8 35 35 H 1.08997 * 109.47125 * 59.99570 * 10 9 8 36 36 H 1.08999 * 109.46740 * 179.97438 * 10 9 8 37 37 H 1.09002 * 109.46215 * 65.82058 * 12 11 4 38 38 H 1.09002 * 109.45773 * 305.85893 * 12 11 4 39 39 H 1.08999 * 109.50505 * 180.87907 * 13 12 11 40 40 H 1.08999 * 109.50657 * 60.75951 * 13 12 11 41 41 H 1.09000 * 109.52425 * 297.75292 * 14 13 12 42 42 H 0.97001 * 120.00428 * 180.02562 * 18 17 15 43 43 H 1.08992 * 109.50395 * 62.28561 * 23 14 13 44 44 H 1.08999 * 109.50365 * 182.40404 * 23 14 13 45 45 H 1.08999 * 109.46168 * 294.17113 * 24 11 4 46 46 H 1.08996 * 109.46687 * 54.14435 * 24 11 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4443 0.1260 5 1 3.8547 0.9227 1.0381 6 6 4.0627 2.8657 0.1803 7 8 4.5637 3.3681 -0.7977 8 8 3.9496 3.5735 1.3152 9 6 4.4501 4.9364 1.2947 10 6 4.2366 5.5787 2.6669 11 7 4.1528 0.7636 -1.0355 12 6 3.6924 1.3712 -2.2905 13 6 4.2062 0.5499 -3.4751 14 6 5.7365 0.5103 -3.4369 15 6 6.2464 -0.3468 -4.5666 16 1 5.5497 -0.8166 -5.2451 17 6 7.6025 -0.5306 -4.7347 18 7 8.0476 -1.2789 -5.7203 19 14 8.8076 0.2824 -3.5617 20 1 9.0775 -0.6278 -2.4197 21 1 10.0771 0.5695 -4.2766 22 1 8.2263 1.5520 -3.0560 23 6 6.1905 -0.0822 -2.0999 24 6 5.6191 0.7574 -0.9551 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6053 1.9815 0.8418 31 1 1.7517 1.9298 -0.9314 32 1 5.5143 4.9291 1.0589 33 1 3.9141 5.5089 0.5377 34 1 3.1725 5.5859 2.9030 35 1 4.7729 5.0060 3.4235 36 1 4.6127 6.6016 2.6516 37 1 4.0737 2.3899 -2.3621 38 1 2.6026 1.3895 -2.3066 39 1 3.8774 1.0101 -4.4069 40 1 3.8142 -0.4651 -3.4116 41 1 6.1298 1.5217 -3.5394 42 1 9.0016 -1.4085 -5.8384 43 1 5.8297 -1.1071 -2.0148 44 1 7.2793 -0.0737 -2.0491 45 1 5.9913 1.7789 -1.0330 46 1 5.9288 0.3299 -0.0015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397208217.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:42 Heat of formation + Delta-G solvation = -92.862348 kcal Electronic energy + Delta-G solvation = -24085.345452 eV Core-core repulsion = 20781.765862 eV Total energy + Delta-G solvation = -3303.579591 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.96732 -38.59470 -36.41104 -35.66033 -33.27505 -32.03772 -31.52996 -30.22338 -29.07888 -25.76328 -24.91612 -23.08928 -22.56454 -21.63929 -21.18646 -20.14956 -18.93945 -17.67197 -16.71095 -16.67480 -16.42600 -15.77195 -14.94061 -14.55646 -14.33473 -14.14354 -13.84168 -13.44199 -13.22769 -13.13629 -12.90758 -12.60380 -12.52491 -12.29444 -12.05635 -11.93720 -11.76221 -11.56679 -11.32914 -11.26483 -10.99310 -10.81301 -10.71477 -10.66041 -10.52074 -10.20820 -10.02685 -9.78936 -9.56542 -8.97824 -8.86453 -8.45671 -7.94677 -6.00414 -3.97987 2.18716 2.63254 3.30938 3.42291 3.45986 4.03579 4.47651 4.56027 4.70395 4.75580 4.82761 4.93003 5.06050 5.08744 5.24366 5.31049 5.44861 5.45718 5.51534 5.53413 5.62134 5.69977 5.74404 5.79797 5.82912 5.95279 6.01434 6.05486 6.17387 6.23426 6.26396 6.40015 6.42084 6.48117 6.66733 6.80848 6.87900 6.96761 7.27183 7.31605 7.47623 7.71120 7.79926 7.87244 8.61310 9.04619 9.63366 11.13212 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.015970 B = 0.005516 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.874606 B = 5074.824001 C = 6380.985888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.108 4.108 4 C 0.093 3.907 5 H 0.114 0.886 6 C 0.429 3.571 7 O -0.495 6.495 8 O -0.364 6.364 9 C 0.058 3.942 10 C -0.150 4.150 11 N -0.494 5.494 12 C 0.028 3.972 13 C -0.092 4.092 14 C 0.013 3.987 15 C -0.508 4.508 16 H 0.073 0.927 17 C 0.069 3.931 18 N -0.904 5.904 19 Si 0.884 3.116 20 H -0.279 1.279 21 H -0.298 1.298 22 H -0.266 1.266 23 C -0.112 4.112 24 C 0.040 3.960 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.023 0.977 42 H 0.262 0.738 43 H 0.069 0.931 44 H 0.048 0.952 45 H 0.043 0.957 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.255 9.138 17.585 23.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.152 4.152 3 C -0.146 4.146 4 C -0.018 4.018 5 H 0.131 0.869 6 C 0.270 3.730 7 O -0.382 6.382 8 O -0.280 6.280 9 C -0.016 4.016 10 C -0.208 4.208 11 N -0.218 5.218 12 C -0.099 4.099 13 C -0.130 4.130 14 C -0.006 4.006 15 C -0.545 4.545 16 H 0.091 0.909 17 C -0.132 4.132 18 N -0.543 5.543 19 Si 0.715 3.285 20 H -0.206 1.206 21 H -0.226 1.226 22 H -0.191 1.191 23 C -0.149 4.149 24 C -0.087 4.087 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.041 0.959 42 H 0.072 0.928 43 H 0.087 0.913 44 H 0.066 0.934 45 H 0.061 0.939 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.088 8.764 17.199 22.776 hybrid contribution 1.325 1.393 0.549 1.999 sum -10.763 10.156 17.748 23.108 Atomic orbital electron populations 1.21788 0.96204 1.01578 1.01386 1.21403 0.94869 0.95301 1.03610 1.21677 0.90814 0.99208 1.02894 1.21950 0.96974 0.84762 0.98150 0.86867 1.25933 0.76078 0.90387 0.80628 1.90645 1.40700 1.71217 1.35640 1.86571 1.75321 1.26929 1.39199 1.22974 0.99611 0.79968 0.99069 1.21789 1.03157 1.00353 0.95460 1.62552 1.09031 1.49216 1.00968 1.22684 0.99055 0.99033 0.89118 1.21454 0.97671 0.99167 0.94725 1.19177 0.92223 0.96479 0.92688 1.21081 0.92427 1.29430 1.11608 0.90871 1.25006 0.98329 0.94723 0.95155 1.69902 1.14163 1.39140 1.31104 0.86887 0.80282 0.80678 0.80670 1.20625 1.22624 1.19130 1.21971 0.98265 0.99718 0.94980 1.22409 0.86204 1.00194 0.99880 0.93174 0.92893 0.92674 0.90064 0.91883 0.90954 0.90898 0.91451 0.91446 0.91562 0.91548 0.90449 0.91585 0.91674 0.92446 0.92097 0.95889 0.92813 0.91272 0.93410 0.93898 0.92158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 37.16 0.37 -0.97 16 2 C -0.11 -1.18 5.73 -26.73 -0.15 -1.34 16 3 C -0.11 -1.18 4.27 -26.73 -0.11 -1.30 16 4 C 0.09 1.24 2.38 -68.86 -0.16 1.07 16 5 H 0.11 1.33 8.14 -51.93 -0.42 0.90 16 6 C 0.43 6.32 6.44 36.01 0.23 6.55 16 7 O -0.50 -8.89 11.70 -18.75 -0.22 -9.11 16 8 O -0.36 -4.65 10.22 -39.25 -0.40 -5.05 16 9 C 0.06 0.62 6.19 37.16 0.23 0.85 16 10 C -0.15 -1.12 10.29 37.16 0.38 -0.74 16 11 N -0.49 -8.13 4.11 -228.08 -0.94 -9.06 16 12 C 0.03 0.49 4.72 -3.84 -0.02 0.47 16 13 C -0.09 -1.91 5.32 -26.65 -0.14 -2.05 16 14 C 0.01 0.32 1.75 -91.65 -0.16 0.16 16 15 C -0.51 -14.59 9.14 -34.44 -0.31 -14.91 16 16 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 17 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 18 N -0.90 -28.29 13.96 55.43 0.77 -27.52 16 19 Si 0.88 22.77 24.37 -169.99 -4.14 18.63 16 20 H -0.28 -6.94 6.89 56.52 0.39 -6.56 16 21 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 22 H -0.27 -6.74 6.53 56.52 0.37 -6.37 16 23 C -0.11 -2.49 4.84 -26.64 -0.13 -2.62 16 24 C 0.04 0.76 5.00 -3.83 -0.02 0.74 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 1.00 7.82 -51.93 -0.41 0.59 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.85 6.08 -51.93 -0.32 0.54 16 32 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 33 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.07 1.29 5.40 -51.93 -0.28 1.01 16 38 H 0.06 1.00 5.84 -51.93 -0.30 0.69 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.02 0.60 7.19 -51.93 -0.37 0.23 16 42 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 43 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 44 H 0.05 1.13 3.39 -51.93 -0.18 0.96 16 45 H 0.04 0.88 6.11 -51.93 -0.32 0.56 16 46 H 0.06 1.00 8.12 -51.93 -0.42 0.58 16 LS Contribution 346.53 15.07 5.22 5.22 Total: -1.00 -32.07 346.53 -7.91 -39.99 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -8.11 Total: -0.95 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: -0.10 Total: -12.14 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: -0.16 Total: -36.58 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -0.62 Total: -14.17 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.14 Total: 18.63 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.07 -7.91 -39.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397208217.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.873 kcal (2) G-P(sol) polarization free energy of solvation -32.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds