Wall clock time and date at job start Tue Mar 31 2020 05:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52996 * 109.47131 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.46739 * 55.00050 * 4 3 2 6 6 C 1.50703 * 109.47152 * 175.00085 * 4 3 2 7 7 O 1.20827 * 119.99662 * 120.00524 * 6 4 3 8 8 O 1.34229 * 119.99718 * 300.00124 * 6 4 3 9 9 C 1.45206 * 116.99505 * 180.02562 * 8 6 4 10 10 C 1.53004 * 109.46890 * 179.97438 * 9 8 6 11 11 N 1.46895 * 109.47375 * 295.00374 * 4 3 2 12 12 C 1.46847 * 110.99881 * 299.20929 * 11 4 3 13 13 C 1.53039 * 109.52329 * 174.16044 * 12 11 4 14 14 C 1.53122 * 109.27813 * 59.17979 * 13 12 11 15 15 C 1.50699 * 109.52235 * 182.44127 * 14 13 12 16 16 H 1.08003 * 120.00348 * 119.67876 * 15 14 13 17 17 C 1.37881 * 119.99905 * 299.68054 * 15 14 13 18 18 N 1.31517 * 119.99943 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99952 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47280 * 89.99992 * 19 17 15 21 21 H 1.48499 * 109.46752 * 210.00108 * 19 17 15 22 22 H 1.48495 * 109.46883 * 329.99466 * 19 17 15 23 23 C 1.53116 * 109.15889 * 302.34191 * 14 13 12 24 24 C 1.46844 * 111.00060 * 174.99806 * 11 4 3 25 25 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 26 26 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 27 27 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 29 29 H 1.09001 * 109.46998 * 239.99868 * 2 1 3 30 30 H 1.08996 * 109.46952 * 300.00302 * 3 2 1 31 31 H 1.09001 * 109.46832 * 60.00321 * 3 2 1 32 32 H 1.09001 * 109.47054 * 299.99898 * 9 8 6 33 33 H 1.08997 * 109.46883 * 60.00327 * 9 8 6 34 34 H 1.08997 * 109.47541 * 300.00348 * 10 9 8 35 35 H 1.09007 * 109.46518 * 60.00221 * 10 9 8 36 36 H 1.08998 * 109.47275 * 179.97438 * 10 9 8 37 37 H 1.09004 * 109.46308 * 294.17643 * 12 11 4 38 38 H 1.09000 * 109.46311 * 54.14288 * 12 11 4 39 39 H 1.08993 * 109.50431 * 299.23423 * 13 12 11 40 40 H 1.09001 * 109.50262 * 179.11726 * 13 12 11 41 41 H 1.08997 * 109.52151 * 62.24738 * 14 13 12 42 42 H 0.97000 * 119.99716 * 179.97438 * 18 17 15 43 43 H 1.08994 * 109.50841 * 297.71373 * 23 14 13 44 44 H 1.09008 * 109.50194 * 177.59600 * 23 14 13 45 45 H 1.08997 * 109.46555 * 305.85338 * 24 11 4 46 46 H 1.09002 * 109.46639 * 65.82307 * 24 11 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8529 -0.8410 6 6 4.0724 2.8579 -0.1232 7 8 4.7668 3.3306 0.7454 8 8 3.7486 3.5933 -1.1983 9 6 4.2683 4.9482 -1.2510 10 6 3.7977 5.6251 -2.5399 11 7 4.0592 0.8573 1.2561 12 6 3.6034 1.6380 2.4133 13 6 4.0067 0.9218 3.7043 14 6 5.5292 0.7630 3.7398 15 6 5.9277 0.0054 4.9801 16 1 6.4521 -0.9348 4.8935 17 6 5.6227 0.5124 6.2255 18 7 5.9700 -0.1490 7.3078 19 14 4.7150 2.1382 6.3753 20 1 3.2513 1.8882 6.3927 21 1 5.1166 2.8151 7.6346 22 1 5.0557 3.0038 5.2178 23 6 5.9828 -0.0115 2.4993 24 6 5.5222 0.7317 1.2432 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9562 0.8900 32 1 3.9045 5.5105 -0.3911 33 1 5.3577 4.9203 -1.2326 34 1 4.1617 5.0626 -3.3996 35 1 2.7081 5.6529 -2.5588 36 1 4.1874 6.6423 -2.5793 37 1 4.0620 2.6265 2.3879 38 1 2.5187 1.7399 2.3781 39 1 3.5373 -0.0613 3.7369 40 1 3.6820 1.5093 4.5630 41 1 5.9980 1.7470 3.7465 42 1 5.7558 0.2080 8.1840 43 1 5.5446 -1.0094 2.5129 44 1 7.0700 -0.0909 2.4972 45 1 5.8312 0.1754 0.3583 46 1 5.9719 1.7244 1.2233 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397208218.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:45 Heat of formation + Delta-G solvation = -92.575967 kcal Electronic energy + Delta-G solvation = -24122.123614 eV Core-core repulsion = 20818.556442 eV Total energy + Delta-G solvation = -3303.567172 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.96359 -38.56290 -36.40372 -35.65556 -33.27858 -32.02829 -31.52060 -30.21318 -29.05653 -25.77688 -24.83576 -23.00929 -22.61631 -21.74880 -21.16460 -20.08775 -18.93407 -17.60482 -16.72457 -16.59393 -16.50218 -15.80975 -14.90696 -14.55582 -14.32121 -14.12751 -13.83202 -13.38262 -13.27447 -13.13901 -12.89084 -12.71949 -12.40283 -12.17163 -12.03241 -12.01022 -11.76498 -11.63561 -11.29095 -11.16956 -11.03251 -10.79674 -10.73941 -10.62023 -10.43906 -10.24078 -10.00141 -9.78929 -9.54511 -9.00209 -8.84253 -8.44342 -7.93794 -5.99769 -3.97362 2.18757 2.63920 3.32314 3.43498 3.48071 4.04445 4.48776 4.55093 4.70577 4.76005 4.83981 4.94185 5.05961 5.12291 5.25009 5.32223 5.46076 5.46806 5.52799 5.54088 5.64811 5.69784 5.75162 5.83550 5.86165 5.98695 6.03379 6.06824 6.17967 6.25303 6.30627 6.37223 6.45192 6.51741 6.64626 6.81193 6.87709 6.98857 7.28043 7.31334 7.48896 7.71800 7.79992 7.87860 8.61725 9.05078 9.64108 11.13814 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.016349 B = 0.005336 C = 0.004680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.228098 B = 5245.887422 C = 5980.863768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.108 4.108 4 C 0.093 3.907 5 H 0.116 0.884 6 C 0.427 3.573 7 O -0.494 6.494 8 O -0.363 6.363 9 C 0.058 3.942 10 C -0.150 4.150 11 N -0.494 5.494 12 C 0.030 3.970 13 C -0.111 4.111 14 C 0.013 3.987 15 C -0.508 4.508 16 H 0.073 0.927 17 C 0.069 3.931 18 N -0.905 5.905 19 Si 0.884 3.116 20 H -0.279 1.279 21 H -0.299 1.299 22 H -0.265 1.265 23 C -0.092 4.092 24 C 0.040 3.960 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.054 0.946 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.047 0.953 41 H 0.023 0.977 42 H 0.262 0.738 43 H 0.062 0.938 44 H 0.057 0.943 45 H 0.060 0.940 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.724 6.905 -20.525 23.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.146 4.146 4 C -0.018 4.018 5 H 0.134 0.866 6 C 0.268 3.732 7 O -0.381 6.381 8 O -0.280 6.280 9 C -0.016 4.016 10 C -0.207 4.207 11 N -0.218 5.218 12 C -0.097 4.097 13 C -0.149 4.149 14 C -0.006 4.006 15 C -0.546 4.546 16 H 0.091 0.909 17 C -0.132 4.132 18 N -0.543 5.543 19 Si 0.715 3.285 20 H -0.206 1.206 21 H -0.227 1.227 22 H -0.190 1.190 23 C -0.130 4.130 24 C -0.087 4.087 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.100 0.900 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.065 0.935 41 H 0.041 0.959 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.694 6.605 -20.023 22.806 hybrid contribution -0.049 1.911 0.280 1.932 sum -8.742 8.516 -19.743 23.211 Atomic orbital electron populations 1.21777 0.96220 1.01527 1.01397 1.21425 0.95020 0.95507 1.03398 1.21677 0.91003 0.99047 1.02875 1.21935 0.97611 0.85665 0.96612 0.86589 1.25932 0.77928 0.90221 0.79100 1.90656 1.35231 1.72611 1.39599 1.86565 1.70033 1.26611 1.44743 1.22971 0.99078 0.80173 0.99397 1.21788 1.02552 1.00111 0.96292 1.62526 1.12509 1.46880 0.99860 1.22623 0.98986 0.97136 0.90954 1.21962 1.00175 0.99735 0.93039 1.19173 0.90970 0.96212 0.94199 1.21081 1.36952 1.07845 0.88703 0.90899 1.25006 0.95490 0.96832 0.95876 1.69908 1.47726 1.38925 0.97781 0.86886 0.79851 0.85005 0.76781 1.20637 1.22667 1.19023 1.21447 0.99451 0.99217 0.92857 1.22443 0.86131 1.00523 0.99648 0.92865 0.93205 0.92732 0.89961 0.92088 0.90753 0.91102 0.91478 0.91452 0.91555 0.91572 0.90467 0.92164 0.92001 0.91513 0.93486 0.95855 0.92827 0.91930 0.92389 0.92164 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.91 37.16 0.37 -1.05 16 2 C -0.12 -1.23 5.82 -26.73 -0.16 -1.38 16 3 C -0.11 -1.22 4.47 -26.73 -0.12 -1.34 16 4 C 0.09 1.23 2.27 -68.87 -0.16 1.08 16 5 H 0.12 1.31 8.08 -51.93 -0.42 0.90 16 6 C 0.43 6.25 6.67 36.01 0.24 6.49 16 7 O -0.49 -8.91 11.37 -18.75 -0.21 -9.13 16 8 O -0.36 -4.56 10.03 -39.26 -0.39 -4.95 16 9 C 0.06 0.62 6.19 37.16 0.23 0.85 16 10 C -0.15 -1.10 10.29 37.16 0.38 -0.72 16 11 N -0.49 -8.12 4.10 -228.08 -0.93 -9.06 16 12 C 0.03 0.56 4.77 -3.83 -0.02 0.54 16 13 C -0.11 -2.50 4.84 -26.65 -0.13 -2.63 16 14 C 0.01 0.33 1.75 -91.65 -0.16 0.17 16 15 C -0.51 -14.62 9.14 -34.44 -0.31 -14.94 16 16 H 0.07 2.25 7.99 -52.48 -0.42 1.83 16 17 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 18 N -0.90 -28.35 13.96 55.43 0.77 -27.58 16 19 Si 0.88 22.87 24.37 -169.99 -4.14 18.73 16 20 H -0.28 -6.98 6.89 56.52 0.39 -6.60 16 21 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 22 H -0.27 -6.76 6.53 56.52 0.37 -6.39 16 23 C -0.09 -1.90 5.32 -26.65 -0.14 -2.04 16 24 C 0.04 0.70 5.08 -3.83 -0.02 0.68 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.08 1.04 7.75 -51.93 -0.40 0.64 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.73 8.00 -51.93 -0.42 0.32 16 31 H 0.07 0.88 6.05 -51.93 -0.31 0.56 16 32 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 33 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.06 1.25 5.45 -51.93 -0.28 0.97 16 38 H 0.06 1.05 5.93 -51.93 -0.31 0.74 16 39 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 40 H 0.05 1.12 3.38 -51.93 -0.18 0.95 16 41 H 0.02 0.61 7.19 -51.93 -0.37 0.24 16 42 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 43 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 44 H 0.06 1.18 8.14 -51.92 -0.42 0.75 16 45 H 0.06 0.90 8.08 -51.93 -0.42 0.49 16 46 H 0.05 0.99 5.92 -51.93 -0.31 0.68 16 LS Contribution 346.14 15.07 5.22 5.22 Total: -1.00 -32.15 346.14 -7.87 -40.02 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -8.09 Total: -0.90 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: -0.09 Total: -12.35 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: -0.16 Total: -36.64 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.61 Total: -14.08 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -4.14 Total: 18.73 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.15 -7.87 -40.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397208218.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.553 kcal (2) G-P(sol) polarization free energy of solvation -32.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds