Wall clock time and date at job start Tue Mar 31 2020 05:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47296 * 2 1 4 4 C 1.53004 * 109.47442 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.47237 * 54.99669 * 4 3 2 6 6 C 1.50696 * 109.47122 * 175.00026 * 4 3 2 7 7 O 1.20832 * 120.00074 * 119.99912 * 6 4 3 8 8 O 1.34222 * 120.00542 * 299.99591 * 6 4 3 9 9 C 1.45199 * 117.00589 * 180.02562 * 8 6 4 10 10 C 1.53002 * 109.47080 * 180.02562 * 9 8 6 11 11 N 1.46906 * 109.46467 * 294.99791 * 4 3 2 12 12 C 1.46837 * 111.00081 * 298.95359 * 11 4 3 13 13 C 1.53042 * 109.52063 * 174.16532 * 12 11 4 14 14 C 1.53120 * 109.28142 * 59.17803 * 13 12 11 15 15 C 1.53112 * 109.15768 * 302.34610 * 14 13 12 16 16 H 1.09007 * 109.50640 * 297.67336 * 15 14 13 17 17 C 1.50706 * 109.50568 * 177.59484 * 15 14 13 18 18 H 1.07999 * 120.00193 * 240.08495 * 17 15 14 19 19 C 1.37879 * 119.99398 * 60.07575 * 17 15 14 20 20 N 1.31514 * 119.99350 * 180.02562 * 19 17 15 21 21 Si 1.86798 * 120.00608 * 0.02562 * 19 17 15 22 22 H 1.48493 * 109.47326 * 270.00340 * 21 19 17 23 23 H 1.48506 * 109.46545 * 30.00090 * 21 19 17 24 24 H 1.48498 * 109.47210 * 149.99801 * 21 19 17 25 25 C 1.46850 * 110.99237 * 174.70047 * 11 4 3 26 26 H 1.09005 * 109.47392 * 299.99971 * 1 2 3 27 27 H 1.09008 * 109.47365 * 59.99600 * 1 2 3 28 28 H 1.08994 * 109.47661 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46906 * 240.00073 * 2 1 3 30 30 H 1.08995 * 109.47119 * 119.99817 * 2 1 3 31 31 H 1.08997 * 109.47437 * 59.99882 * 3 2 1 32 32 H 1.09005 * 109.47449 * 300.00010 * 3 2 1 33 33 H 1.08998 * 109.46964 * 300.00060 * 9 8 6 34 34 H 1.09002 * 109.46881 * 59.99966 * 9 8 6 35 35 H 1.09000 * 109.46556 * 180.02562 * 10 9 8 36 36 H 1.08998 * 109.47258 * 299.99865 * 10 9 8 37 37 H 1.09002 * 109.47304 * 60.00209 * 10 9 8 38 38 H 1.08999 * 109.46857 * 54.14933 * 12 11 4 39 39 H 1.09001 * 109.45674 * 294.17039 * 12 11 4 40 40 H 1.08999 * 109.50344 * 299.23171 * 13 12 11 41 41 H 1.09002 * 109.50118 * 179.12244 * 13 12 11 42 42 H 1.08996 * 109.52026 * 182.43899 * 14 13 12 43 43 H 1.08994 * 109.52464 * 62.25103 * 14 13 12 44 44 H 0.97005 * 119.99661 * 179.97438 * 20 19 17 45 45 H 1.09004 * 109.43008 * 65.80329 * 25 11 4 46 46 H 1.09006 * 109.49901 * 305.83931 * 25 11 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8532 -0.8426 6 6 4.0723 2.8579 -0.1245 7 8 4.7673 3.3305 0.7437 8 8 3.7477 3.5937 -1.1991 9 6 4.2672 4.9485 -1.2519 10 6 3.7946 5.6262 -2.5396 11 7 4.0601 0.8570 1.2544 12 6 3.6102 1.6408 2.4117 13 6 4.0141 0.9248 3.7025 14 6 5.5361 0.7601 3.7345 15 6 5.9835 -0.0176 2.4938 16 1 5.5420 -1.0141 2.5100 17 6 7.4861 -0.1331 2.4870 18 1 8.0558 0.2806 1.6680 19 6 8.1334 -0.7667 3.5265 20 7 9.4447 -0.8670 3.5209 21 14 7.1480 -1.4826 4.9428 22 1 6.9830 -0.4538 6.0009 23 1 5.8121 -1.9064 4.4518 24 1 7.8655 -2.6566 5.5014 25 6 5.5225 0.7249 1.2375 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 1.9564 -0.8900 33 1 3.9041 5.5107 -0.3915 34 1 5.3567 4.9208 -1.2342 35 1 4.1850 6.6431 -2.5794 36 1 4.1573 5.0642 -3.4002 37 1 2.7050 5.6540 -2.5568 38 1 2.5259 1.7469 2.3793 39 1 4.0727 2.6275 2.3839 40 1 3.5411 -0.0566 3.7376 41 1 3.6937 1.5146 4.5614 42 1 5.8244 0.2122 4.6315 43 1 6.0087 1.7423 3.7388 44 1 9.9002 -1.3124 4.2524 45 1 5.9759 1.7159 1.2144 46 1 5.8272 0.1657 0.3528 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397664902.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:53 Heat of formation + Delta-G solvation = -92.851249 kcal Electronic energy + Delta-G solvation = -24133.277345 eV Core-core repulsion = 20829.698235 eV Total energy + Delta-G solvation = -3303.579109 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.85891 -38.49403 -36.30924 -35.62903 -33.11265 -32.09609 -31.70086 -30.26236 -28.90464 -25.32942 -24.73138 -23.63350 -22.51686 -21.64278 -21.05215 -19.93907 -18.95837 -17.51651 -16.79724 -16.54261 -16.27039 -15.74707 -14.95284 -14.46122 -14.31935 -13.92460 -13.71809 -13.58521 -13.32301 -13.04696 -12.86311 -12.63694 -12.31281 -12.22134 -12.10602 -12.00670 -11.79540 -11.44704 -11.24932 -11.17652 -10.95043 -10.84807 -10.61033 -10.54570 -10.37567 -10.25842 -9.95631 -9.88443 -9.60667 -9.04488 -8.87482 -8.45575 -7.81059 -6.01257 -3.99724 2.30514 2.74065 3.33423 3.43444 3.47202 4.16433 4.47765 4.62282 4.79198 4.84325 4.92373 4.99725 5.14108 5.15332 5.29900 5.31038 5.48642 5.53050 5.54490 5.61472 5.65159 5.70223 5.77235 5.83180 5.87832 5.90176 6.05468 6.16549 6.23716 6.27783 6.33343 6.40895 6.46963 6.48657 6.67853 6.75277 6.87039 6.92389 7.23167 7.39401 7.46453 7.70522 7.89532 7.92222 8.58716 9.02272 9.61669 11.12191 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.016652 B = 0.005390 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.052413 B = 5193.807821 C = 6269.276918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.106 4.106 4 C 0.094 3.906 5 H 0.118 0.882 6 C 0.428 3.572 7 O -0.493 6.493 8 O -0.364 6.364 9 C 0.058 3.942 10 C -0.150 4.150 11 N -0.503 5.503 12 C 0.037 3.963 13 C -0.116 4.116 14 C -0.121 4.121 15 C 0.024 3.976 16 H 0.034 0.966 17 C -0.511 4.511 18 H 0.071 0.929 19 C 0.070 3.930 20 N -0.904 5.904 21 Si 0.889 3.111 22 H -0.281 1.281 23 H -0.263 1.263 24 H -0.299 1.299 25 C 0.061 3.939 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.045 0.955 43 H 0.057 0.943 44 H 0.263 0.737 45 H 0.052 0.948 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.528 8.037 -9.474 21.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.144 4.144 4 C -0.018 4.018 5 H 0.135 0.865 6 C 0.269 3.731 7 O -0.380 6.380 8 O -0.280 6.280 9 C -0.016 4.016 10 C -0.207 4.207 11 N -0.226 5.226 12 C -0.090 4.090 13 C -0.153 4.153 14 C -0.159 4.159 15 C 0.005 3.995 16 H 0.052 0.948 17 C -0.549 4.549 18 H 0.089 0.911 19 C -0.131 4.131 20 N -0.542 5.542 21 Si 0.719 3.281 22 H -0.208 1.208 23 H -0.188 1.188 24 H -0.227 1.227 25 C -0.066 4.066 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.344 7.675 -9.082 21.029 hybrid contribution 0.212 0.653 0.879 1.115 sum -17.132 8.328 -8.203 20.740 Atomic orbital electron populations 1.21777 0.96324 1.01432 1.01324 1.21424 0.94832 0.95666 1.03486 1.21660 0.91257 0.98826 1.02680 1.21910 0.97227 0.85777 0.96870 0.86480 1.25901 0.77920 0.90124 0.79128 1.90645 1.34950 1.72557 1.39817 1.86558 1.69971 1.26582 1.44916 1.22959 0.99240 0.80163 0.99240 1.21786 1.02400 1.00109 0.96440 1.62577 1.14483 1.46076 0.99492 1.22427 0.98964 0.97163 0.90490 1.21610 0.98325 1.00028 0.95383 1.22003 0.92809 1.01101 0.99963 1.19115 0.96324 0.94573 0.89505 0.94827 1.20994 0.89288 1.36726 1.07909 0.91061 1.24976 0.94679 0.95449 0.98015 1.69908 1.07613 1.43960 1.32751 0.86814 0.80472 0.78018 0.82753 1.20777 1.18810 1.22718 1.22351 0.83207 1.00586 1.00436 0.93025 0.93150 0.92814 0.91945 0.90129 0.91316 0.90808 0.91595 0.91337 0.90514 0.91524 0.91658 0.91922 0.91793 0.92091 0.92880 0.93703 0.92399 0.92767 0.92937 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 37.15 0.37 -0.98 16 2 C -0.12 -1.24 5.82 -26.73 -0.16 -1.39 16 3 C -0.11 -1.20 4.47 -26.73 -0.12 -1.31 16 4 C 0.09 1.32 2.27 -68.86 -0.16 1.17 16 5 H 0.12 1.54 8.08 -51.93 -0.42 1.12 16 6 C 0.43 6.61 6.67 36.00 0.24 6.85 16 7 O -0.49 -9.20 11.38 -18.76 -0.21 -9.41 16 8 O -0.36 -4.85 10.03 -39.24 -0.39 -5.25 16 9 C 0.06 0.66 6.19 37.16 0.23 0.89 16 10 C -0.15 -1.19 10.29 37.16 0.38 -0.81 16 11 N -0.50 -8.65 4.09 -228.08 -0.93 -9.58 16 12 C 0.04 0.62 4.77 -3.84 -0.02 0.61 16 13 C -0.12 -2.13 6.09 -26.65 -0.16 -2.29 16 14 C -0.12 -2.75 4.74 -26.61 -0.13 -2.87 16 15 C 0.02 0.58 1.85 -91.69 -0.17 0.41 16 16 H 0.03 0.84 7.20 -51.93 -0.37 0.47 16 17 C -0.51 -14.69 9.15 -34.44 -0.31 -15.01 16 18 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 19 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 20 N -0.90 -28.25 13.96 55.43 0.77 -27.48 16 21 Si 0.89 22.60 24.35 -169.99 -4.14 18.46 16 22 H -0.28 -6.99 6.89 56.52 0.39 -6.60 16 23 H -0.26 -6.42 6.53 56.52 0.37 -6.05 16 24 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 25 C 0.06 1.27 4.31 -3.83 -0.02 1.26 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.08 1.01 7.75 -51.93 -0.40 0.61 16 31 H 0.07 0.79 6.06 -51.93 -0.31 0.48 16 32 H 0.07 0.74 7.99 -51.93 -0.42 0.32 16 33 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 34 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.91 5.94 -51.93 -0.31 0.60 16 39 H 0.06 1.21 5.43 -51.93 -0.28 0.92 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.04 1.06 3.35 -51.93 -0.17 0.89 16 43 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 44 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 45 H 0.05 1.21 5.94 -51.93 -0.31 0.90 16 46 H 0.06 1.31 8.07 -51.93 -0.42 0.90 16 LS Contribution 346.13 15.07 5.22 5.22 Total: -1.00 -31.90 346.13 -7.90 -39.79 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -8.09 Total: -0.22 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: -0.12 Total: -11.53 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: -0.16 Total: -37.06 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.61 Total: -14.66 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.14 Total: 18.46 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.90 -7.90 -39.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397664902.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.057 kcal (2) G-P(sol) polarization free energy of solvation -31.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds