Wall clock time and date at job start Tue Mar 31 2020 05:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46918 * 2 1 4 4 C 1.52994 * 109.47052 * 175.00333 * 3 2 1 5 5 H 1.09006 * 109.47204 * 302.39797 * 4 3 2 6 6 C 1.50701 * 109.47275 * 182.39673 * 4 3 2 7 7 O 1.20824 * 120.00096 * 250.03427 * 6 4 3 8 8 O 1.34232 * 119.99841 * 70.03226 * 6 4 3 9 9 C 1.45197 * 116.99889 * 179.97438 * 8 6 4 10 10 C 1.53004 * 109.47205 * 180.02562 * 9 8 6 11 11 N 1.46904 * 109.47589 * 62.39716 * 4 3 2 12 12 C 1.46846 * 110.99584 * 56.57604 * 11 4 3 13 13 C 1.53038 * 109.52126 * 185.84302 * 12 11 4 14 14 C 1.53118 * 109.31078 * 300.80048 * 13 12 11 15 15 C 1.53208 * 109.11515 * 57.63618 * 14 13 12 16 16 H 1.09002 * 109.49283 * 62.32015 * 15 14 13 17 17 C 1.50696 * 109.52439 * 182.40132 * 15 14 13 18 18 H 1.08000 * 119.99997 * 119.84118 * 17 15 14 19 19 C 1.37879 * 120.00499 * 299.84492 * 17 15 14 20 20 N 1.31513 * 120.00197 * 180.02562 * 19 17 15 21 21 Si 1.86806 * 119.99566 * 359.97438 * 19 17 15 22 22 H 1.48498 * 109.46857 * 90.00533 * 21 19 17 23 23 H 1.48502 * 109.47076 * 210.00090 * 21 19 17 24 24 H 1.48501 * 109.47105 * 329.99995 * 21 19 17 25 25 C 1.46847 * 111.00340 * 180.78902 * 11 4 3 26 26 H 1.08996 * 109.47202 * 60.00340 * 1 2 3 27 27 H 1.09009 * 109.46905 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47172 * 300.00278 * 1 2 3 29 29 H 1.08995 * 109.47172 * 239.99722 * 2 1 3 30 30 H 1.09006 * 109.46877 * 119.99262 * 2 1 3 31 31 H 1.08995 * 109.47510 * 54.99957 * 3 2 1 32 32 H 1.09001 * 109.46654 * 294.99730 * 3 2 1 33 33 H 1.08997 * 109.47914 * 300.00586 * 9 8 6 34 34 H 1.09002 * 109.46742 * 60.00692 * 9 8 6 35 35 H 1.09002 * 109.46840 * 60.00587 * 10 9 8 36 36 H 1.08997 * 109.47601 * 180.02562 * 10 9 8 37 37 H 1.09005 * 109.47297 * 300.01023 * 10 9 8 38 38 H 1.08995 * 109.46272 * 65.82895 * 12 11 4 39 39 H 1.09004 * 109.46667 * 305.85558 * 12 11 4 40 40 H 1.09000 * 109.50613 * 60.76101 * 13 12 11 41 41 H 1.08998 * 109.50365 * 180.84352 * 13 12 11 42 42 H 1.09004 * 109.52348 * 177.57619 * 14 13 12 43 43 H 1.08997 * 109.52321 * 297.76824 * 14 13 12 44 44 H 0.97007 * 119.99521 * 180.02562 * 20 19 17 45 45 H 1.08999 * 109.45995 * 294.17814 * 25 11 4 46 46 H 1.08997 * 109.46080 * 54.14118 * 25 11 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4444 0.1256 5 1 3.8550 0.9196 1.0359 6 6 4.0622 2.8657 0.1849 7 8 4.6784 3.3294 -0.7453 8 8 3.8208 3.6165 1.2710 9 6 4.3302 4.9762 1.2590 10 6 3.9606 5.6709 2.5711 11 7 4.1529 0.7679 -1.0382 12 6 3.7170 1.3998 -2.2900 13 6 4.2286 0.5845 -3.4797 14 6 5.7574 0.5164 -3.4269 15 6 6.1863 -0.1011 -2.0920 16 1 5.8061 -1.1204 -2.0239 17 6 7.6906 -0.1185 -2.0053 18 1 8.1919 0.4131 -1.2099 19 6 8.4272 -0.8128 -2.9415 20 7 9.7401 -0.8283 -2.8655 21 14 7.5602 -1.7327 -4.3169 22 1 7.3896 -0.8311 -5.4845 23 1 8.3738 -2.9095 -4.7150 24 1 6.2282 -2.1887 -3.8446 25 6 5.6179 0.7341 -0.9425 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 1.6054 1.9816 0.8417 32 1 1.7516 1.9298 -0.9314 33 1 5.4146 4.9571 1.1513 34 1 3.8916 5.5210 0.4229 35 1 4.3994 5.1260 3.4069 36 1 4.3425 6.6917 2.5620 37 1 2.8760 5.6900 2.6793 38 1 4.1173 2.4121 -2.3444 39 1 2.6279 1.4381 -2.3175 40 1 3.8177 -0.4240 -3.4335 41 1 3.9176 1.0620 -4.4088 42 1 6.1232 -0.0995 -4.2485 43 1 6.1699 1.5217 -3.5123 44 1 10.2583 -1.3166 -3.5244 45 1 6.0093 1.7495 -1.0032 46 1 5.9095 0.2889 0.0087 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397664903.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:57 Heat of formation + Delta-G solvation = -93.056038 kcal Electronic energy + Delta-G solvation = -24144.769465 eV Core-core repulsion = 20841.181475 eV Total energy + Delta-G solvation = -3303.587990 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.85700 -38.51074 -36.30307 -35.62855 -33.10540 -32.10586 -31.68827 -30.26399 -28.90561 -25.40945 -24.68638 -23.62632 -22.52770 -21.62914 -21.03988 -19.93060 -18.96586 -17.55522 -16.80166 -16.51631 -16.24035 -15.79338 -14.94973 -14.46929 -14.26668 -13.92755 -13.74487 -13.58475 -13.33403 -13.02615 -12.85948 -12.63949 -12.31821 -12.25925 -12.10361 -11.98534 -11.77743 -11.44071 -11.27055 -11.17318 -10.95185 -10.86253 -10.60333 -10.54113 -10.37984 -10.28181 -9.95968 -9.88548 -9.60472 -9.05149 -8.87773 -8.45932 -7.81829 -6.01676 -4.00236 2.31255 2.74821 3.33232 3.43255 3.47035 4.16339 4.47448 4.63641 4.80364 4.84743 4.92039 4.98822 5.12676 5.16253 5.29362 5.30600 5.48665 5.51734 5.54837 5.63060 5.64824 5.71084 5.78222 5.80818 5.85948 5.90210 6.04153 6.16275 6.22632 6.27085 6.33027 6.40512 6.46451 6.48040 6.68766 6.73862 6.86541 6.91895 7.22563 7.38359 7.46666 7.69821 7.88642 7.92959 8.58101 9.01664 9.61218 11.11732 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.016047 B = 0.005516 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.463339 B = 5075.066861 C = 6250.028156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C -0.108 4.108 4 C 0.094 3.906 5 H 0.116 0.884 6 C 0.430 3.570 7 O -0.494 6.494 8 O -0.364 6.364 9 C 0.058 3.942 10 C -0.150 4.150 11 N -0.503 5.503 12 C 0.036 3.964 13 C -0.116 4.116 14 C -0.121 4.121 15 C 0.024 3.976 16 H 0.034 0.966 17 C -0.511 4.511 18 H 0.071 0.929 19 C 0.070 3.930 20 N -0.904 5.904 21 Si 0.889 3.111 22 H -0.280 1.280 23 H -0.299 1.299 24 H -0.263 1.263 25 C 0.060 3.940 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.045 0.955 43 H 0.057 0.943 44 H 0.263 0.737 45 H 0.050 0.950 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.053 7.737 7.957 21.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C -0.145 4.145 4 C -0.018 4.018 5 H 0.134 0.866 6 C 0.270 3.730 7 O -0.381 6.381 8 O -0.280 6.280 9 C -0.016 4.016 10 C -0.207 4.207 11 N -0.226 5.226 12 C -0.091 4.091 13 C -0.154 4.154 14 C -0.159 4.159 15 C 0.005 3.995 16 H 0.052 0.948 17 C -0.550 4.550 18 H 0.089 0.911 19 C -0.131 4.131 20 N -0.542 5.542 21 Si 0.719 3.281 22 H -0.208 1.208 23 H -0.227 1.227 24 H -0.188 1.188 25 C -0.066 4.066 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.853 7.359 7.603 20.753 hybrid contribution 0.237 0.571 -0.917 1.106 sum -17.615 7.930 6.686 20.443 Atomic orbital electron populations 1.21791 0.96327 1.01468 1.01339 1.21404 0.94707 0.95509 1.03590 1.21667 0.91218 0.98953 1.02700 1.21915 0.96639 0.84897 0.98313 0.86607 1.25894 0.77092 0.90111 0.79870 1.90636 1.37323 1.73269 1.36855 1.86562 1.72510 1.25815 1.43156 1.22961 0.99537 0.79920 0.99184 1.21787 1.02703 0.99990 0.96262 1.62611 1.11637 1.48190 1.00169 1.22440 0.98943 0.98407 0.89310 1.21615 0.97986 0.99814 0.95974 1.22021 0.92723 1.01149 1.00005 1.19123 0.95941 0.94857 0.89558 0.94790 1.20988 0.88786 1.31998 1.13184 0.91087 1.24975 0.94630 0.95868 0.97628 1.69908 1.05113 1.42902 1.36291 0.86816 0.79743 0.78923 0.82589 1.20760 1.22704 1.18799 1.22345 0.83137 1.00588 1.00526 0.93045 0.92773 0.93105 0.90303 0.91755 0.90862 0.91254 0.91296 0.91603 0.91492 0.90504 0.91681 0.91659 0.91786 0.92117 0.92873 0.93687 0.92417 0.92760 0.93190 0.91806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 37.16 0.37 -0.97 16 2 C -0.11 -1.21 5.73 -26.73 -0.15 -1.37 16 3 C -0.11 -1.21 4.32 -26.73 -0.12 -1.32 16 4 C 0.09 1.33 2.35 -68.87 -0.16 1.17 16 5 H 0.12 1.52 8.14 -51.93 -0.42 1.10 16 6 C 0.43 6.69 6.56 36.01 0.24 6.92 16 7 O -0.49 -9.23 11.49 -18.75 -0.22 -9.44 16 8 O -0.36 -4.95 10.22 -39.26 -0.40 -5.35 16 9 C 0.06 0.67 6.19 37.16 0.23 0.90 16 10 C -0.15 -1.23 10.29 37.16 0.38 -0.85 16 11 N -0.50 -8.65 4.11 -228.09 -0.94 -9.59 16 12 C 0.04 0.61 4.74 -3.83 -0.02 0.60 16 13 C -0.12 -2.13 6.09 -26.65 -0.16 -2.30 16 14 C -0.12 -2.75 4.75 -26.56 -0.13 -2.88 16 15 C 0.02 0.59 1.85 -91.65 -0.17 0.42 16 16 H 0.03 0.85 7.19 -51.93 -0.37 0.48 16 17 C -0.51 -14.70 9.14 -34.44 -0.31 -15.02 16 18 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 19 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 20 N -0.90 -28.24 13.96 55.43 0.77 -27.46 16 21 Si 0.89 22.58 24.36 -169.99 -4.14 18.44 16 22 H -0.28 -6.98 6.89 56.52 0.39 -6.60 16 23 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 24 H -0.26 -6.41 6.53 56.52 0.37 -6.04 16 25 C 0.06 1.27 4.24 -3.84 -0.02 1.26 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.97 7.82 -51.93 -0.41 0.57 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.80 6.09 -51.93 -0.32 0.49 16 33 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 34 H 0.07 0.75 8.13 -51.93 -0.42 0.32 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 1.23 5.46 -51.93 -0.28 0.95 16 39 H 0.06 0.93 5.87 -51.93 -0.30 0.62 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.04 1.07 3.37 -51.93 -0.18 0.89 16 43 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 44 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 45 H 0.05 1.15 5.94 -51.93 -0.31 0.84 16 46 H 0.06 1.32 8.12 -51.93 -0.42 0.90 16 LS Contribution 346.42 15.07 5.22 5.22 Total: -1.00 -31.91 346.42 -7.93 -39.84 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -8.11 Total: -0.20 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -0.12 Total: -11.46 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: -0.16 Total: -37.05 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.62 Total: -14.80 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.14 Total: 18.44 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.91 -7.93 -39.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397664903.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.216 kcal (2) G-P(sol) polarization free energy of solvation -31.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds