Wall clock time and date at job start Tue Mar 31 2020 05:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42897 * 114.00033 * 2 1 4 4 C 1.52994 * 109.47492 * 180.02562 * 3 2 1 5 5 C 1.53006 * 115.55029 * 305.36555 * 4 3 2 6 6 C 1.50708 * 109.46835 * 293.76854 * 5 4 3 7 7 O 1.21282 * 120.00105 * 6.78346 * 6 5 4 8 8 N 1.34777 * 119.99848 * 186.78266 * 6 5 4 9 9 C 1.46498 * 120.00104 * 181.65524 * 8 6 5 10 10 C 1.50703 * 109.46908 * 269.72913 * 9 8 6 11 11 H 1.08001 * 119.99979 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00046 * 180.02562 * 10 9 8 13 13 N 1.31512 * 120.00282 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 119.99701 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.47218 * 90.00272 * 14 12 10 16 16 H 1.48505 * 109.47128 * 210.00019 * 14 12 10 17 17 H 1.48500 * 109.47314 * 330.00062 * 14 12 10 18 18 C 1.46501 * 119.99682 * 1.37923 * 8 6 5 19 19 C 1.53005 * 109.47005 * 245.98286 * 18 8 6 20 20 C 1.52999 * 109.46946 * 53.58182 * 19 18 8 21 21 C 1.52998 * 109.46984 * 173.57889 * 19 18 8 22 22 C 1.53002 * 117.50224 * 91.03463 * 4 3 2 23 23 C 1.53004 * 117.50430 * 159.69531 * 4 3 2 24 24 H 1.09005 * 109.46904 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47037 * 299.99665 * 1 2 3 26 26 H 1.09001 * 109.47258 * 59.99992 * 1 2 3 27 27 H 1.09000 * 109.47001 * 59.99905 * 3 2 1 28 28 H 1.09000 * 109.47189 * 300.00353 * 3 2 1 29 29 H 1.08996 * 109.47489 * 173.76600 * 5 4 3 30 30 H 1.09001 * 109.46956 * 53.76380 * 5 4 3 31 31 H 1.09000 * 109.46860 * 29.71913 * 9 8 6 32 32 H 1.08989 * 109.47341 * 149.72516 * 9 8 6 33 33 H 0.96998 * 120.00200 * 179.97438 * 13 12 10 34 34 H 1.08991 * 109.47485 * 5.98415 * 18 8 6 35 35 H 1.09004 * 109.47094 * 125.99014 * 18 8 6 36 36 H 1.08994 * 109.46839 * 293.57828 * 19 18 8 37 37 H 1.08999 * 109.47371 * 54.29312 * 20 19 18 38 38 H 1.08997 * 109.47111 * 174.29861 * 20 19 18 39 39 H 1.09006 * 109.47213 * 294.29532 * 20 19 18 40 40 H 1.09006 * 109.47209 * 59.99931 * 21 19 18 41 41 H 1.09000 * 109.46930 * 180.02562 * 21 19 18 42 42 H 1.08996 * 109.47556 * 300.00387 * 21 19 18 43 43 H 1.08999 * 117.49792 * 215.00602 * 22 4 3 44 44 H 1.08995 * 117.49622 * 0.02562 * 22 4 3 45 45 H 1.09001 * 117.49437 * 359.97438 * 23 4 3 46 46 H 1.08998 * 117.49927 * 144.99063 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1306 0.3359 1.1247 6 6 3.8838 1.0125 2.4485 7 8 3.1861 2.0031 2.5025 8 7 4.4383 0.5167 3.5724 9 6 4.1691 1.1529 4.8643 10 6 5.2070 2.2132 5.1281 11 1 5.9892 2.3947 4.4058 12 6 5.1587 2.9509 6.2919 13 7 6.0647 3.8758 6.5224 14 14 3.8061 2.6364 7.5414 15 1 4.2560 1.6030 8.5084 16 1 3.5013 3.8951 8.2683 17 1 2.5859 2.1613 6.8411 18 6 5.3055 -0.6620 3.5029 19 6 4.6383 -1.8297 4.2325 20 6 3.2292 -2.0412 3.6750 21 6 5.4650 -3.1002 4.0246 22 6 4.2411 1.1536 -1.3578 23 6 4.3400 2.3979 -0.4717 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.6885 1.8463 0.8900 28 1 1.6885 1.8464 -0.8899 29 1 5.2035 0.2252 0.9677 30 1 3.6602 -0.6473 1.1259 31 1 3.1797 1.6099 4.8450 32 1 4.2074 0.4025 5.6538 33 1 6.0304 4.3950 7.3410 34 1 5.4694 -0.9315 2.4596 35 1 6.2621 -0.4377 3.9749 36 1 4.5779 -1.6058 5.2975 37 1 3.2812 -2.1645 2.5933 38 1 2.7919 -2.9339 4.1220 39 1 2.6107 -1.1756 3.9127 40 1 6.4689 -2.9496 4.4217 41 1 4.9894 -3.9322 4.5440 42 1 5.5255 -3.3241 2.9596 43 1 5.1293 0.5285 -1.4490 44 1 3.6188 1.2196 -2.2502 45 1 3.7826 3.2819 -0.7815 46 1 5.2932 2.5913 0.0202 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401331283.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:08 Heat of formation + Delta-G solvation = -65.456142 kcal Electronic energy + Delta-G solvation = -24041.812957 eV Core-core repulsion = 20739.421788 eV Total energy + Delta-G solvation = -3302.391168 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.70574 -38.14300 -36.61874 -36.09332 -33.52040 -32.25129 -29.86117 -28.14862 -27.32376 -26.94690 -25.57319 -25.26784 -22.48351 -22.22458 -20.10579 -19.42825 -17.94188 -16.89092 -16.54795 -16.20299 -15.81552 -15.61920 -15.11683 -14.81353 -14.39374 -14.16967 -13.95603 -13.51033 -13.27206 -13.13187 -12.62302 -12.29611 -12.10118 -11.95970 -11.92478 -11.72154 -11.59457 -11.50362 -11.34813 -10.98125 -10.91096 -10.84777 -10.68373 -10.43616 -10.30560 -10.18677 -10.02871 -9.84760 -9.55455 -9.43917 -8.69620 -8.55363 -7.58390 -6.05176 -4.02658 3.28427 3.36490 3.41144 3.49009 3.58467 3.92245 4.18234 4.42665 4.81771 4.90745 5.03624 5.08806 5.13406 5.17095 5.25661 5.30873 5.31462 5.42098 5.51581 5.59268 5.65195 5.70823 5.74043 5.76393 5.77111 5.85700 5.93666 6.05389 6.06610 6.09250 6.17534 6.23605 6.26081 6.29274 6.32829 6.54037 6.56201 6.78346 7.04927 7.27113 7.44812 7.67046 8.37305 8.52453 8.98314 9.11751 9.56124 11.08452 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.013495 B = 0.005904 C = 0.005162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.281372 B = 4741.206910 C = 5423.053030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.389 6.389 3 C 0.097 3.903 4 C -0.099 4.099 5 C -0.101 4.101 6 C 0.513 3.487 7 O -0.538 6.538 8 N -0.592 5.592 9 C 0.218 3.782 10 C -0.523 4.523 11 H 0.073 0.927 12 C 0.071 3.929 13 N -0.899 5.899 14 Si 0.873 3.127 15 H -0.276 1.276 16 H -0.284 1.284 17 H -0.264 1.264 18 C 0.114 3.886 19 C -0.116 4.116 20 C -0.142 4.142 21 C -0.142 4.142 22 C -0.174 4.174 23 C -0.156 4.156 24 H 0.082 0.918 25 H 0.041 0.959 26 H 0.036 0.964 27 H 0.077 0.923 28 H 0.041 0.959 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.038 0.962 32 H 0.024 0.976 33 H 0.263 0.737 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.052 0.948 38 H 0.048 0.952 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.094 0.906 44 H 0.092 0.908 45 H 0.094 0.906 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.659 -12.232 -12.598 18.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C 0.021 3.979 4 C -0.099 4.099 5 C -0.141 4.141 6 C 0.301 3.699 7 O -0.416 6.416 8 N -0.323 5.323 9 C 0.097 3.903 10 C -0.562 4.562 11 H 0.091 0.909 12 C -0.130 4.130 13 N -0.538 5.538 14 Si 0.700 3.300 15 H -0.202 1.202 16 H -0.210 1.210 17 H -0.189 1.189 18 C -0.010 4.010 19 C -0.135 4.135 20 C -0.199 4.199 21 C -0.200 4.200 22 C -0.211 4.211 23 C -0.193 4.193 24 H 0.100 0.900 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.095 0.905 28 H 0.060 0.940 29 H 0.103 0.897 30 H 0.116 0.884 31 H 0.056 0.944 32 H 0.041 0.959 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.112 0.888 44 H 0.111 0.889 45 H 0.113 0.887 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.863 -11.716 -12.413 18.048 hybrid contribution -0.693 0.179 0.847 1.109 sum -6.556 -11.537 -11.566 17.603 Atomic orbital electron populations 1.22673 0.81556 1.02243 0.99819 1.87809 1.19111 1.28470 1.95448 1.22101 0.90648 0.84236 1.00961 1.20875 0.92575 1.01699 0.94778 1.21201 1.01293 0.99819 0.91770 1.20259 0.80215 0.84411 0.85064 1.90605 1.39113 1.25599 1.86259 1.47845 1.47369 1.28657 1.08410 1.19569 0.97969 0.92940 0.79779 1.21338 1.12079 1.17568 1.05175 0.90854 1.24846 0.95620 0.94719 0.97854 1.69897 1.34808 1.22875 1.26239 0.86895 0.83304 0.78029 0.81806 1.20161 1.21024 1.18900 1.21577 0.94141 0.84866 1.00384 1.21508 0.95687 0.94960 1.01383 1.21785 0.96408 1.01251 1.00495 1.21760 0.99918 0.96872 1.01425 1.23114 1.02576 1.01698 0.93729 1.22954 1.01800 0.92055 1.02453 0.89993 0.94067 0.94555 0.90473 0.94037 0.89722 0.88378 0.94405 0.95862 0.92673 0.90917 0.90853 0.90596 0.92922 0.93306 0.92422 0.92530 0.92828 0.92826 0.88774 0.88920 0.88744 0.88262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.39 -5.66 10.20 -35.23 -0.36 -6.02 16 3 C 0.10 1.45 5.54 37.15 0.21 1.65 16 4 C -0.10 -1.46 1.39 -154.51 -0.22 -1.68 16 5 C -0.10 -1.57 3.89 -27.88 -0.11 -1.68 16 6 C 0.51 10.43 7.51 -10.98 -0.08 10.35 16 7 O -0.54 -12.96 13.88 5.56 0.08 -12.88 16 8 N -0.59 -12.12 1.65 -175.06 -0.29 -12.41 16 9 C 0.22 5.35 4.12 -5.19 -0.02 5.33 16 10 C -0.52 -15.11 9.94 -34.44 -0.34 -15.45 16 11 H 0.07 2.33 8.06 -52.49 -0.42 1.90 16 12 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 13 N -0.90 -27.97 13.96 55.43 0.77 -27.19 16 14 Si 0.87 21.82 27.47 -169.99 -4.67 17.15 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 17 H -0.26 -6.47 6.54 56.52 0.37 -6.10 16 18 C 0.11 1.84 5.23 -4.04 -0.02 1.82 16 19 C -0.12 -1.63 2.86 -90.62 -0.26 -1.89 16 20 C -0.14 -1.95 8.80 37.16 0.33 -1.62 16 21 C -0.14 -1.56 9.19 37.16 0.34 -1.22 16 22 C -0.17 -2.07 9.91 -26.69 -0.26 -2.34 16 23 C -0.16 -2.18 9.97 -26.69 -0.27 -2.45 16 24 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.08 1.36 6.41 -51.93 -0.33 1.03 16 28 H 0.04 0.54 8.09 -51.93 -0.42 0.12 16 29 H 0.08 1.17 7.18 -51.93 -0.37 0.80 16 30 H 0.10 1.42 6.84 -51.93 -0.36 1.07 16 31 H 0.04 1.01 6.49 -51.93 -0.34 0.67 16 32 H 0.02 0.55 6.29 -51.94 -0.33 0.22 16 33 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 34 H 0.07 0.98 5.73 -51.93 -0.30 0.68 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.08 1.19 7.13 -51.93 -0.37 0.82 16 37 H 0.05 0.67 7.18 -51.93 -0.37 0.30 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.94 7.65 -51.93 -0.40 0.54 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 46 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 365.82 15.07 5.51 5.51 Total: -1.00 -33.41 365.82 -6.89 -40.30 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -8.25 Total: 1.22 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: 0.31 Total: -5.67 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.48 Total: -39.61 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.28 Total: -18.90 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.41 -6.89 -40.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401331283.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.160 kcal (2) G-P(sol) polarization free energy of solvation -33.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds