Wall clock time and date at job start Tue Mar 31 2020 05:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47574 * 2 1 4 4 C 1.53003 * 109.46647 * 239.99866 * 2 1 3 5 5 N 1.46510 * 109.46766 * 182.93671 * 4 2 1 6 6 C 1.46498 * 119.99699 * 83.43853 * 5 4 2 7 7 C 1.50703 * 109.47218 * 94.64630 * 6 5 4 8 8 H 1.07997 * 119.99915 * 4.77658 * 7 6 5 9 9 C 1.37880 * 120.00137 * 184.77947 * 7 6 5 10 10 N 1.31513 * 120.00057 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 119.99946 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47382 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.46964 * 119.99861 * 11 9 7 14 14 H 1.48497 * 109.47211 * 240.00055 * 11 9 7 15 15 C 1.34772 * 119.99944 * 263.43581 * 5 4 2 16 16 O 1.21285 * 119.99451 * 175.30021 * 15 5 4 17 17 C 1.50692 * 120.00189 * 355.30042 * 15 5 4 18 18 C 1.53009 * 109.46940 * 176.67592 * 17 15 5 19 19 C 1.53000 * 109.46809 * 179.97438 * 18 17 15 20 20 H 1.08996 * 110.81089 * 308.62643 * 19 18 17 21 21 C 1.54811 * 110.90657 * 185.00016 * 19 18 17 22 22 C 1.54105 * 104.18849 * 220.92312 * 21 19 18 23 23 O 1.43743 * 107.29374 * 357.96864 * 22 21 19 24 24 C 1.44383 * 106.97619 * 26.51399 * 23 22 21 25 25 H 1.09001 * 109.46865 * 299.99990 * 1 2 3 26 26 H 1.08998 * 109.47540 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47374 * 59.99614 * 1 2 3 28 28 H 1.08998 * 109.46894 * 120.00257 * 2 1 3 29 29 H 1.09005 * 109.47170 * 65.14440 * 3 2 1 30 30 H 1.08991 * 109.47479 * 185.14577 * 3 2 1 31 31 H 1.09006 * 109.46728 * 305.15210 * 3 2 1 32 32 H 1.08994 * 109.47649 * 302.93911 * 4 2 1 33 33 H 1.08999 * 109.47134 * 62.94324 * 4 2 1 34 34 H 1.08996 * 109.47213 * 214.64907 * 6 5 4 35 35 H 1.09008 * 109.47440 * 334.64849 * 6 5 4 36 36 H 0.96998 * 120.00238 * 180.02562 * 10 9 7 37 37 H 1.09001 * 109.47497 * 296.67311 * 17 15 5 38 38 H 1.08996 * 109.47503 * 56.68025 * 17 15 5 39 39 H 1.08998 * 109.47002 * 299.99657 * 18 17 15 40 40 H 1.09000 * 109.47218 * 60.00416 * 18 17 15 41 41 H 1.09000 * 110.48573 * 339.59892 * 21 19 18 42 42 H 1.08991 * 110.48929 * 102.11248 * 21 19 18 43 43 H 1.09005 * 109.87532 * 117.39106 * 22 21 19 44 44 H 1.08996 * 109.87692 * 238.54233 * 22 21 19 45 45 H 1.08998 * 110.61927 * 201.43982 * 24 23 22 46 46 H 1.09000 * 110.62017 * 78.43856 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 3.5033 -0.7829 -1.2144 6 6 4.1739 -1.8443 -0.4595 7 6 4.4989 -2.9896 -1.3835 8 1 4.3029 -2.9018 -2.4419 9 6 5.0464 -4.1495 -0.8776 10 7 5.2845 -4.2566 0.4114 11 14 5.4486 -5.5693 -2.0228 12 1 5.0879 -5.1998 -3.4151 13 1 6.9017 -5.8669 -1.9509 14 1 4.6766 -6.7698 -1.6130 15 6 4.2324 0.1368 -1.8770 16 8 5.4413 0.1373 -1.7792 17 6 3.5457 1.1643 -2.7392 18 6 4.5865 2.1314 -3.3070 19 6 3.8894 3.1742 -4.1830 20 1 3.2435 2.6935 -4.9176 21 6 4.9237 4.0948 -4.8753 22 6 4.3000 5.5009 -4.7822 23 8 3.0192 5.3589 -4.1454 24 6 3.0893 4.1794 -3.3157 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.7540 1.9290 0.9325 30 1 3.1261 1.4438 -0.0922 31 1 1.6033 1.9822 -0.8403 32 1 1.6342 -1.7326 -1.2760 33 1 1.7202 -0.1779 -2.1385 34 1 5.0948 -1.4551 -0.0253 35 1 3.5168 -2.1949 0.3365 36 1 5.6700 -5.0724 0.7672 37 1 3.0291 0.6644 -3.5586 38 1 2.8241 1.7186 -2.1390 39 1 5.1031 2.6313 -2.4877 40 1 5.3081 1.5772 -3.9073 41 1 5.8762 4.0641 -4.3461 42 1 5.0575 3.8027 -5.9168 43 1 4.9401 6.1515 -4.1862 44 1 4.1730 5.9169 -5.7816 45 1 2.0903 3.7965 -3.1076 46 1 3.6203 4.3935 -2.3882 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401335182.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:43 Heat of formation + Delta-G solvation = -108.988344 kcal Electronic energy + Delta-G solvation = -23466.312294 eV Core-core repulsion = 20162.033427 eV Total energy + Delta-G solvation = -3304.278866 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.79003 -39.07999 -36.32259 -34.52993 -33.56402 -32.25739 -30.93851 -28.89570 -27.38141 -27.06340 -25.60374 -24.38185 -22.84056 -21.88684 -20.40599 -20.18038 -18.15332 -16.73231 -16.55478 -16.44681 -15.64327 -15.54244 -15.27684 -14.91859 -14.49247 -14.15169 -14.02988 -13.44909 -13.34077 -13.02296 -12.67816 -12.42378 -12.40386 -12.09041 -11.78219 -11.69221 -11.66601 -11.44855 -11.20987 -10.95411 -10.91131 -10.88135 -10.76996 -10.72097 -10.53573 -10.48717 -10.27156 -10.11981 -9.81882 -9.58484 -8.83824 -8.43610 -7.60218 -6.04159 -4.08349 3.29243 3.36606 3.40045 3.47894 3.77117 3.98543 4.40990 4.45158 4.63667 4.75736 4.93761 5.05641 5.07568 5.12927 5.14131 5.29797 5.30869 5.34424 5.41307 5.54249 5.60264 5.62442 5.65776 5.70128 5.71275 5.76096 5.83642 5.90027 5.95122 5.98094 6.07316 6.19842 6.25560 6.28610 6.38650 6.47433 6.55883 6.70782 7.09946 7.46637 7.57781 7.93371 8.24962 8.47671 8.91635 9.14223 9.56828 11.03840 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.016865 B = 0.004415 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.874416 B = 6340.419798 C = 7531.294179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C -0.148 4.148 4 C 0.116 3.884 5 N -0.597 5.597 6 C 0.247 3.753 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.060 3.940 10 N -0.896 5.896 11 Si 0.897 3.103 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.284 1.284 15 C 0.507 3.493 16 O -0.545 6.545 17 C -0.152 4.152 18 C -0.092 4.092 19 C -0.121 4.121 20 H 0.085 0.915 21 C -0.153 4.153 22 C 0.047 3.953 23 O -0.383 6.383 24 C 0.049 3.951 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.077 0.923 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.037 0.963 35 H 0.035 0.965 36 H 0.262 0.738 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.056 0.944 44 H 0.080 0.920 45 H 0.092 0.908 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.293 15.403 -6.329 18.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.137 4.137 3 C -0.206 4.206 4 C -0.009 4.009 5 N -0.328 5.328 6 C 0.128 3.872 7 C -0.562 4.562 8 H 0.075 0.925 9 C -0.141 4.141 10 N -0.535 5.535 11 Si 0.725 3.275 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.210 1.210 15 C 0.294 3.706 16 O -0.423 6.423 17 C -0.192 4.192 18 C -0.130 4.130 19 C -0.140 4.140 20 H 0.104 0.896 21 C -0.191 4.191 22 C -0.030 4.030 23 O -0.302 6.302 24 C -0.027 4.027 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.095 0.905 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.110 0.890 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.075 0.925 44 H 0.099 0.901 45 H 0.110 0.890 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.748 15.394 -6.155 18.300 hybrid contribution 0.376 -1.143 -0.516 1.309 sum -7.372 14.251 -6.671 17.376 Atomic orbital electron populations 1.21758 0.95036 1.01818 1.01385 1.21557 0.95367 0.96564 1.00173 1.21967 1.01599 0.95991 1.01002 1.21522 0.81613 1.01121 0.96643 1.48212 1.05395 1.28883 1.50309 1.19228 0.93222 0.83647 0.91149 1.21484 1.41459 0.98818 0.94414 0.92520 1.24930 0.95530 0.98545 0.95144 1.69940 1.44187 1.27630 1.11728 0.86460 0.78150 0.81974 0.80948 1.19839 1.20899 1.20982 1.20305 0.87608 0.82028 0.80685 1.90657 1.14243 1.73484 1.63936 1.21987 0.99787 0.97313 1.00160 1.21289 0.97359 0.95341 0.99016 1.22802 0.97068 0.96207 0.97926 0.89631 1.23002 0.99658 0.94488 1.01974 1.23141 0.85158 0.96826 0.97865 1.88845 1.32768 1.46358 1.62213 1.23711 1.01090 0.84272 0.93663 0.92834 0.92481 0.92876 0.90479 0.92985 0.92285 0.92886 0.90372 0.91462 0.94468 0.94730 0.92821 0.89608 0.89024 0.91098 0.90669 0.90265 0.90493 0.92538 0.90143 0.88982 0.91893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.19 37.16 0.34 -1.18 16 2 C -0.12 -1.59 3.13 -90.62 -0.28 -1.87 16 3 C -0.15 -1.85 7.67 37.16 0.29 -1.56 16 4 C 0.12 1.82 4.87 -4.04 -0.02 1.80 16 5 N -0.60 -12.30 2.19 -175.06 -0.38 -12.68 16 6 C 0.25 6.40 5.18 -5.19 -0.03 6.38 16 7 C -0.52 -14.84 9.35 -34.44 -0.32 -15.16 16 8 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 9 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 10 N -0.90 -26.56 13.29 55.43 0.74 -25.83 16 11 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 12 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 C 0.51 10.21 6.18 -10.99 -0.07 10.14 16 16 O -0.55 -13.47 15.61 5.55 0.09 -13.38 16 17 C -0.15 -2.15 3.83 -27.88 -0.11 -2.26 16 18 C -0.09 -1.21 3.91 -26.73 -0.10 -1.31 16 19 C -0.12 -1.27 3.10 -88.61 -0.27 -1.54 16 20 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 21 C -0.15 -1.44 6.60 -25.20 -0.17 -1.61 16 22 C 0.05 0.44 7.70 37.73 0.29 0.73 16 23 O -0.38 -4.51 11.52 -35.23 -0.41 -4.92 16 24 C 0.05 0.51 6.63 38.21 0.25 0.76 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.88 6.05 -51.93 -0.31 0.56 16 31 H 0.05 0.55 6.82 -51.93 -0.35 0.20 16 32 H 0.08 1.30 8.12 -51.93 -0.42 0.88 16 33 H 0.07 0.88 6.25 -51.93 -0.32 0.56 16 34 H 0.04 1.09 7.50 -51.93 -0.39 0.70 16 35 H 0.03 0.91 8.04 -51.92 -0.42 0.50 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.09 1.11 7.77 -51.93 -0.40 0.70 16 38 H 0.09 1.09 4.14 -51.93 -0.21 0.88 16 39 H 0.07 0.98 7.97 -51.93 -0.41 0.57 16 40 H 0.07 1.10 8.06 -51.93 -0.42 0.68 16 41 H 0.08 0.74 7.86 -51.93 -0.41 0.34 16 42 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 46 H 0.06 0.65 7.93 -51.93 -0.41 0.23 16 LS Contribution 360.31 15.07 5.43 5.43 Total: -1.00 -32.80 360.31 -8.12 -40.92 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -8.27 Total: -1.37 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -0.30 Total: -5.06 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 0.35 Total: -38.51 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.32 Total: -18.30 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.80 -8.12 -40.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401335182.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.070 kcal (2) G-P(sol) polarization free energy of solvation -32.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds