Wall clock time and date at job start Tue Mar 31 2020 06:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47559 * 2 1 4 4 C 1.53005 * 109.47313 * 239.99793 * 2 1 3 5 5 O 1.45200 * 109.47084 * 119.99935 * 2 1 3 6 6 C 1.34227 * 116.99894 * 59.99838 * 5 2 1 7 7 O 1.20827 * 120.00151 * 0.02562 * 6 5 2 8 8 C 1.50703 * 120.00087 * 180.02562 * 6 5 2 9 9 C 1.53004 * 109.47369 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47320 * 179.97438 * 9 8 6 11 11 H 1.09009 * 109.49418 * 305.07035 * 10 9 8 12 12 C 1.53033 * 109.50015 * 185.00347 * 10 9 8 13 13 C 1.53040 * 109.54027 * 178.68518 * 12 10 9 14 14 C 1.53186 * 109.31349 * 61.36253 * 13 12 10 15 15 N 1.46924 * 108.77678 * 305.36615 * 14 13 12 16 16 C 1.36932 * 120.63205 * 233.60853 * 15 14 13 17 17 H 1.08006 * 120.00333 * 152.79237 * 16 15 14 18 18 C 1.38817 * 120.00248 * 332.79439 * 16 15 14 19 19 N 1.31613 * 120.00335 * 159.75289 * 18 16 15 20 20 Si 1.86803 * 119.99700 * 339.75500 * 18 16 15 21 21 H 1.48493 * 109.46971 * 94.89458 * 20 18 16 22 22 H 1.48496 * 109.46945 * 214.89921 * 20 18 16 23 23 H 1.48510 * 109.46906 * 334.89495 * 20 18 16 24 24 C 1.46928 * 118.73841 * 53.60855 * 15 14 13 25 25 H 1.08999 * 109.47016 * 300.00191 * 1 2 3 26 26 H 1.08998 * 109.46481 * 59.99933 * 1 2 3 27 27 H 1.09002 * 109.47027 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47327 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.46637 * 299.99976 * 3 2 1 30 30 H 1.09003 * 109.46947 * 59.99403 * 3 2 1 31 31 H 1.09003 * 109.46836 * 300.00461 * 4 2 1 32 32 H 1.08999 * 109.47120 * 59.99880 * 4 2 1 33 33 H 1.08994 * 109.46985 * 180.02562 * 4 2 1 34 34 H 1.09004 * 109.47251 * 60.00041 * 8 6 5 35 35 H 1.09000 * 109.47271 * 299.99861 * 8 6 5 36 36 H 1.08990 * 109.47124 * 300.00310 * 9 8 6 37 37 H 1.09004 * 109.46675 * 59.99964 * 9 8 6 38 38 H 1.09006 * 109.46088 * 298.70371 * 12 10 9 39 39 H 1.09001 * 109.46298 * 58.67829 * 12 10 9 40 40 H 1.08997 * 109.49838 * 181.31463 * 13 12 10 41 41 H 1.09006 * 109.49579 * 301.40854 * 13 12 10 42 42 H 1.09005 * 109.58759 * 65.15326 * 14 13 12 43 43 H 1.09005 * 109.58893 * 185.57818 * 14 13 12 44 44 H 0.97003 * 120.00181 * 179.97438 * 19 18 16 45 45 H 1.08996 * 109.58748 * 186.60610 * 24 15 14 46 46 H 1.08998 * 109.58663 * 66.17741 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6533 -1.9684 1.3379 7 8 0.9566 -2.5027 0.5078 8 6 2.1173 -2.7434 2.5442 9 6 1.5697 -4.1704 2.4751 10 6 2.0413 -4.9575 3.6995 11 1 3.1284 -4.9109 3.7653 12 6 1.5994 -6.4169 3.5700 13 6 2.0988 -7.2121 4.7784 14 6 1.4836 -6.6322 6.0559 15 7 1.7821 -5.1948 6.1142 16 6 2.3813 -4.6509 7.2189 17 1 2.9829 -3.7591 7.1229 18 6 2.2156 -5.2459 8.4621 19 7 3.0706 -4.9952 9.4308 20 14 0.7791 -6.4022 8.7601 21 1 1.2179 -7.8036 8.5398 22 1 0.3005 -6.2471 10.1572 23 1 -0.3230 -6.0750 7.8201 24 6 1.4255 -4.3520 4.9648 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 -1.7490 -1.2492 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7217 -1.2490 34 1 1.7530 -2.2583 3.4499 35 1 3.2067 -2.7723 2.5605 36 1 0.4803 -4.1412 2.4590 37 1 1.9336 -4.6557 1.5695 38 1 0.5112 -6.4645 3.5285 39 1 2.0165 -6.8430 2.6576 40 1 1.8037 -8.2562 4.6740 41 1 3.1853 -7.1445 4.8346 42 1 0.4038 -6.7809 6.0416 43 1 1.9116 -7.1299 6.9261 44 1 2.9546 -5.4107 10.2997 45 1 1.8151 -3.3452 5.1151 46 1 0.3410 -4.3147 4.8615 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412069321.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:09 Heat of formation + Delta-G solvation = -87.547884 kcal Electronic energy + Delta-G solvation = -23216.512422 eV Core-core repulsion = 19913.163284 eV Total energy + Delta-G solvation = -3303.349138 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.90288 -38.31070 -37.13024 -34.44486 -34.11448 -32.39225 -30.80193 -29.40818 -27.64184 -27.62247 -25.39981 -24.94183 -22.33579 -21.77174 -20.61025 -19.63068 -19.26321 -17.19372 -16.65798 -16.52427 -16.34316 -15.33950 -14.93905 -14.40249 -14.34686 -13.92903 -13.84087 -13.39634 -13.21804 -13.10984 -12.99698 -12.70822 -12.38210 -12.21454 -12.14250 -12.11996 -11.84810 -11.65242 -11.54090 -11.41601 -11.29883 -11.05431 -10.73621 -10.53904 -10.46900 -10.28295 -10.03385 -9.97842 -9.74438 -9.57300 -9.38393 -8.58631 -6.93191 -5.92403 -3.27645 2.23345 2.62372 3.34718 3.50614 3.53921 4.47011 4.52589 4.55783 4.59714 4.68720 4.90018 4.99216 5.09964 5.22906 5.28678 5.30939 5.42813 5.44592 5.49178 5.53922 5.56148 5.59686 5.62158 5.74452 5.75787 5.78774 6.01508 6.02278 6.04849 6.07510 6.18483 6.23248 6.31558 6.39385 6.46554 6.49712 6.66029 6.67190 6.75125 6.79012 7.04931 7.82318 7.99237 8.35150 8.97380 9.75325 10.14102 11.23662 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.027284 B = 0.003483 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.009817 B = 8036.845307 C = 8577.222067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.115 3.885 3 C -0.141 4.141 4 C -0.182 4.182 5 O -0.352 6.352 6 C 0.465 3.535 7 O -0.508 6.508 8 C -0.118 4.118 9 C -0.097 4.097 10 C -0.107 4.107 11 H 0.073 0.927 12 C -0.103 4.103 13 C -0.135 4.135 14 C 0.125 3.875 15 N -0.607 5.607 16 C -0.259 4.259 17 H 0.085 0.915 18 C 0.022 3.978 19 N -0.910 5.910 20 Si 0.883 3.117 21 H -0.290 1.290 22 H -0.304 1.304 23 H -0.270 1.270 24 C 0.153 3.847 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.050 0.950 40 H 0.052 0.948 41 H 0.063 0.937 42 H 0.024 0.976 43 H 0.070 0.930 44 H 0.262 0.738 45 H 0.062 0.938 46 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.798 7.529 -20.027 21.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.079 3.921 3 C -0.198 4.198 4 C -0.239 4.239 5 O -0.270 6.270 6 C 0.309 3.691 7 O -0.396 6.396 8 C -0.155 4.155 9 C -0.135 4.135 10 C -0.127 4.127 11 H 0.092 0.908 12 C -0.140 4.140 13 C -0.175 4.175 14 C -0.001 4.001 15 N -0.330 5.330 16 C -0.387 4.387 17 H 0.103 0.897 18 C -0.176 4.176 19 N -0.553 5.553 20 Si 0.714 3.286 21 H -0.217 1.217 22 H -0.233 1.233 23 H -0.195 1.195 24 C 0.027 3.973 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.103 0.897 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.128 0.872 35 H 0.123 0.877 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.042 0.958 43 H 0.088 0.912 44 H 0.072 0.928 45 H 0.080 0.920 46 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -2.964 7.407 -20.107 21.632 hybrid contribution -0.808 -0.638 0.203 1.050 sum -3.772 6.768 -19.905 21.360 Atomic orbital electron populations 1.22489 0.94106 1.04800 1.02624 1.22151 0.94384 0.92315 0.83281 1.21849 1.02230 0.92744 1.02977 1.22485 1.01637 1.03205 0.96622 1.86589 1.69826 1.25794 1.44809 1.23942 0.77106 0.80302 0.87717 1.90551 1.35530 1.69961 1.43564 1.21589 1.03682 0.95824 0.94447 1.21435 1.01377 0.91939 0.98740 1.21697 1.01149 0.94950 0.94895 0.90836 1.21407 1.00257 0.94949 0.97414 1.22011 1.01295 0.97788 0.96357 1.21337 0.96792 0.85574 0.96380 1.44340 1.70934 1.01777 1.15943 1.18931 1.23404 1.12095 0.84260 0.89701 1.25264 0.98143 0.98735 0.95496 1.69832 1.35237 1.46225 1.04045 0.86935 0.85152 0.80298 0.76232 1.21748 1.23271 1.19487 1.21021 0.96098 0.94196 0.86005 0.91941 0.91258 0.89727 0.91475 0.90540 0.91400 0.89754 0.91251 0.92053 0.87166 0.87695 0.91264 0.91566 0.92657 0.93104 0.92958 0.91807 0.95806 0.91237 0.92827 0.91959 0.96037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.79 8.37 37.16 0.31 -1.48 16 2 C 0.11 1.15 1.13 -90.62 -0.10 1.05 16 3 C -0.14 -1.08 8.85 37.16 0.33 -0.75 16 4 C -0.18 -1.73 8.37 37.16 0.31 -1.42 16 5 O -0.35 -4.30 9.89 -39.25 -0.39 -4.68 16 6 C 0.47 5.96 7.27 36.01 0.26 6.22 16 7 O -0.51 -7.26 11.48 -18.75 -0.22 -7.48 16 8 C -0.12 -1.42 5.57 -27.88 -0.16 -1.58 16 9 C -0.10 -1.27 3.98 -26.73 -0.11 -1.38 16 10 C -0.11 -1.67 2.34 -90.50 -0.21 -1.89 16 11 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16 12 C -0.10 -1.60 5.17 -26.69 -0.14 -1.74 16 13 C -0.14 -2.41 6.08 -26.61 -0.16 -2.58 16 14 C 0.12 2.75 4.19 -3.71 -0.02 2.73 16 15 N -0.61 -14.38 2.77 -172.32 -0.48 -14.86 16 16 C -0.26 -7.21 10.04 -15.06 -0.15 -7.36 16 17 H 0.09 2.50 8.06 -52.48 -0.42 2.08 16 18 C 0.02 0.65 5.24 -17.43 -0.09 0.55 16 19 N -0.91 -28.01 13.97 55.49 0.78 -27.23 16 20 Si 0.88 22.62 24.35 -169.99 -4.14 18.48 16 21 H -0.29 -7.19 6.70 56.52 0.38 -6.81 16 22 H -0.30 -7.93 7.11 56.52 0.40 -7.52 16 23 H -0.27 -6.79 6.46 56.52 0.36 -6.43 16 24 C 0.15 2.92 5.41 -3.71 -0.02 2.90 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 1.00 5.89 -51.93 -0.31 0.70 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.97 5.89 -51.93 -0.31 0.66 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.11 1.32 6.70 -51.93 -0.35 0.97 16 35 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 37 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 42 H 0.02 0.53 6.98 -51.93 -0.36 0.16 16 43 H 0.07 1.68 4.49 -51.93 -0.23 1.45 16 44 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 45 H 0.06 1.16 6.65 -51.93 -0.35 0.81 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 347.89 15.07 5.24 5.24 Total: -1.00 -31.39 347.89 -7.42 -38.82 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -8.28 Total: -1.58 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: 0.06 Total: -6.71 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: 0.30 Total: -42.09 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: -0.60 Total: -12.16 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.14 Total: 18.48 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.39 -7.42 -38.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412069321.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.732 kcal (2) G-P(sol) polarization free energy of solvation -31.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds