Wall clock time and date at job start Tue Mar 31 2020 06:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47559 * 2 1 4 4 C 1.53005 * 109.47313 * 239.99793 * 2 1 3 5 5 O 1.45200 * 109.47084 * 119.99935 * 2 1 3 6 6 C 1.34227 * 116.99894 * 59.99838 * 5 2 1 7 7 O 1.20827 * 120.00151 * 0.02562 * 6 5 2 8 8 C 1.50703 * 120.00087 * 180.02562 * 6 5 2 9 9 C 1.53004 * 109.47369 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47320 * 179.97438 * 9 8 6 11 11 H 1.09009 * 109.49418 * 305.07035 * 10 9 8 12 12 C 1.53033 * 109.50015 * 185.00347 * 10 9 8 13 13 C 1.53040 * 109.54027 * 178.68518 * 12 10 9 14 14 C 1.53186 * 109.31349 * 61.36253 * 13 12 10 15 15 N 1.46924 * 108.77678 * 305.36615 * 14 13 12 16 16 C 1.36932 * 120.63205 * 233.60853 * 15 14 13 17 17 H 1.08006 * 120.00333 * 152.79237 * 16 15 14 18 18 C 1.38817 * 120.00248 * 332.79439 * 16 15 14 19 19 N 1.31613 * 120.00335 * 159.75289 * 18 16 15 20 20 Si 1.86803 * 119.99700 * 339.75500 * 18 16 15 21 21 H 1.48493 * 109.46971 * 94.89458 * 20 18 16 22 22 H 1.48496 * 109.46945 * 214.89921 * 20 18 16 23 23 H 1.48510 * 109.46906 * 334.89495 * 20 18 16 24 24 C 1.46928 * 118.73841 * 53.60855 * 15 14 13 25 25 H 1.08999 * 109.47016 * 300.00191 * 1 2 3 26 26 H 1.08998 * 109.46481 * 59.99933 * 1 2 3 27 27 H 1.09002 * 109.47027 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47327 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.46637 * 299.99976 * 3 2 1 30 30 H 1.09003 * 109.46947 * 59.99403 * 3 2 1 31 31 H 1.09003 * 109.46836 * 300.00461 * 4 2 1 32 32 H 1.08999 * 109.47120 * 59.99880 * 4 2 1 33 33 H 1.08994 * 109.46985 * 180.02562 * 4 2 1 34 34 H 1.09004 * 109.47251 * 60.00041 * 8 6 5 35 35 H 1.09000 * 109.47271 * 299.99861 * 8 6 5 36 36 H 1.08990 * 109.47124 * 300.00310 * 9 8 6 37 37 H 1.09004 * 109.46675 * 59.99964 * 9 8 6 38 38 H 1.09006 * 109.46088 * 298.70371 * 12 10 9 39 39 H 1.09001 * 109.46298 * 58.67829 * 12 10 9 40 40 H 1.08997 * 109.49838 * 181.31463 * 13 12 10 41 41 H 1.09006 * 109.49579 * 301.40854 * 13 12 10 42 42 H 1.09005 * 109.58759 * 65.15326 * 14 13 12 43 43 H 1.09005 * 109.58893 * 185.57818 * 14 13 12 44 44 H 0.97003 * 120.00181 * 179.97438 * 19 18 16 45 45 H 1.08996 * 109.58748 * 186.60610 * 24 15 14 46 46 H 1.08998 * 109.58663 * 66.17741 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6533 -1.9684 1.3379 7 8 0.9566 -2.5027 0.5078 8 6 2.1173 -2.7434 2.5442 9 6 1.5697 -4.1704 2.4751 10 6 2.0413 -4.9575 3.6995 11 1 3.1284 -4.9109 3.7653 12 6 1.5994 -6.4169 3.5700 13 6 2.0988 -7.2121 4.7784 14 6 1.4836 -6.6322 6.0559 15 7 1.7821 -5.1948 6.1142 16 6 2.3813 -4.6509 7.2189 17 1 2.9829 -3.7591 7.1229 18 6 2.2156 -5.2459 8.4621 19 7 3.0706 -4.9952 9.4308 20 14 0.7791 -6.4022 8.7601 21 1 1.2179 -7.8036 8.5398 22 1 0.3005 -6.2471 10.1572 23 1 -0.3230 -6.0750 7.8201 24 6 1.4255 -4.3520 4.9648 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 -1.7490 -1.2492 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7217 -1.2490 34 1 1.7530 -2.2583 3.4499 35 1 3.2067 -2.7723 2.5605 36 1 0.4803 -4.1412 2.4590 37 1 1.9336 -4.6557 1.5695 38 1 0.5112 -6.4645 3.5285 39 1 2.0165 -6.8430 2.6576 40 1 1.8037 -8.2562 4.6740 41 1 3.1853 -7.1445 4.8346 42 1 0.4038 -6.7809 6.0416 43 1 1.9116 -7.1299 6.9261 44 1 2.9546 -5.4107 10.2997 45 1 1.8151 -3.3452 5.1151 46 1 0.3410 -4.3147 4.8615 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412069321.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:08 Heat of formation + Delta-G solvation = -105.078449 kcal Electronic energy + Delta-G solvation = -23217.272604 eV Core-core repulsion = 19913.163284 eV Total energy + Delta-G solvation = -3304.109321 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.84108 -39.75660 -38.12724 -35.89410 -35.04847 -34.05397 -32.65327 -30.72257 -28.36926 -28.29065 -27.22244 -26.24334 -23.68368 -23.35450 -21.80569 -20.71023 -20.50754 -18.72525 -18.07412 -17.43688 -17.33822 -17.20873 -16.22479 -15.56945 -15.39345 -15.36083 -15.02306 -14.81013 -14.63431 -14.37132 -14.33862 -13.93838 -13.48669 -13.32130 -13.19438 -13.07893 -12.93672 -12.85495 -12.78260 -12.61515 -12.45576 -12.31383 -12.18387 -11.95583 -11.79341 -11.54297 -11.52693 -11.36419 -11.23873 -11.06138 -10.90324 -10.63726 -8.89300 -8.15108 -5.45713 1.25221 1.29953 1.41111 1.50129 1.75377 2.42717 3.07781 3.37403 3.66518 3.76984 3.80225 3.80600 3.96875 3.98933 4.11148 4.24190 4.33610 4.40622 4.51939 4.60413 4.60791 4.66033 4.68718 4.75814 4.76500 4.82642 4.87695 4.94304 4.95415 5.03090 5.04536 5.11750 5.12189 5.16717 5.26535 5.29186 5.30646 5.36543 5.38948 5.59543 5.67177 5.89033 6.14715 6.86473 6.94597 7.65489 8.06775 9.04852 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.027284 B = 0.003483 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.009817 B = 8036.845307 C = 8577.222067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.102 3.898 3 C -0.138 4.138 4 C -0.178 4.178 5 O -0.361 6.361 6 C 0.467 3.533 7 O -0.524 6.524 8 C -0.118 4.118 9 C -0.084 4.084 10 C -0.095 4.095 11 H 0.067 0.933 12 C -0.100 4.100 13 C -0.129 4.129 14 C 0.116 3.884 15 N -0.622 5.622 16 C -0.245 4.245 17 H 0.055 0.945 18 C -0.037 4.037 19 N -0.958 5.958 20 Si 0.945 3.055 21 H -0.278 1.278 22 H -0.312 1.312 23 H -0.261 1.261 24 C 0.147 3.853 25 H 0.060 0.940 26 H 0.090 0.910 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.099 0.901 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.063 0.937 34 H 0.109 0.891 35 H 0.117 0.883 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.053 0.947 42 H 0.030 0.970 43 H 0.044 0.956 44 H 0.261 0.739 45 H 0.059 0.941 46 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.704 7.301 -22.563 24.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.067 3.933 3 C -0.194 4.194 4 C -0.236 4.236 5 O -0.279 6.279 6 C 0.312 3.688 7 O -0.414 6.414 8 C -0.155 4.155 9 C -0.122 4.122 10 C -0.115 4.115 11 H 0.085 0.915 12 C -0.138 4.138 13 C -0.168 4.168 14 C -0.008 4.008 15 N -0.346 5.346 16 C -0.375 4.375 17 H 0.073 0.927 18 C -0.231 4.231 19 N -0.605 5.605 20 Si 0.775 3.225 21 H -0.205 1.205 22 H -0.242 1.242 23 H -0.186 1.186 24 C 0.022 3.978 25 H 0.079 0.921 26 H 0.109 0.891 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.118 0.882 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.109 0.891 33 H 0.082 0.918 34 H 0.127 0.873 35 H 0.135 0.865 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.072 0.928 42 H 0.048 0.952 43 H 0.063 0.937 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -3.886 7.175 -22.697 24.120 hybrid contribution -0.495 -0.473 0.910 1.139 sum -4.381 6.702 -21.787 23.212 Atomic orbital electron populations 1.22461 0.94036 1.03596 1.03649 1.22504 0.94643 0.93447 0.82724 1.21877 1.02362 0.91143 1.04063 1.22447 1.01754 1.02094 0.97265 1.86579 1.69870 1.25474 1.45976 1.23965 0.76741 0.80562 0.87546 1.90553 1.36266 1.70358 1.44202 1.21574 1.04422 0.95276 0.94216 1.21271 1.01106 0.92142 0.97659 1.21530 1.00431 0.95578 0.93982 0.91497 1.21426 1.00779 0.94159 0.97432 1.21928 1.00379 0.99450 0.95018 1.21422 0.97176 0.84508 0.97743 1.44506 1.71004 1.03205 1.15875 1.18917 1.22054 1.10729 0.85779 0.92678 1.25874 1.00403 1.01345 0.95481 1.69958 1.37186 1.48754 1.04607 0.85919 0.82041 0.79053 0.75482 1.20459 1.24160 1.18597 1.21230 0.96663 0.93879 0.85982 0.92090 0.89093 0.91945 0.91299 0.88237 0.91546 0.91902 0.89150 0.91803 0.87325 0.86500 0.91551 0.90505 0.91985 0.90242 0.90308 0.92806 0.95228 0.93737 0.93050 0.92237 0.95382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.28 8.37 71.98 0.60 -2.67 16 2 C 0.10 1.89 1.13 -10.79 -0.01 1.88 16 3 C -0.14 -1.80 8.85 71.98 0.64 -1.17 16 4 C -0.18 -3.08 8.37 71.98 0.60 -2.48 16 5 O -0.36 -8.42 9.89 -51.39 -0.51 -8.93 16 6 C 0.47 11.46 7.27 71.24 0.52 11.98 16 7 O -0.52 -14.46 11.48 21.96 0.25 -14.21 16 8 C -0.12 -2.67 5.57 29.85 0.17 -2.50 16 9 C -0.08 -2.01 3.98 30.60 0.12 -1.89 16 10 C -0.10 -2.78 2.34 -10.72 -0.03 -2.81 16 11 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 12 C -0.10 -2.79 5.17 30.62 0.16 -2.63 16 13 C -0.13 -4.25 6.08 30.67 0.19 -4.07 16 14 C 0.12 4.95 4.19 86.36 0.36 5.31 16 15 N -0.62 -29.16 2.77 -699.10 -1.94 -31.09 16 16 C -0.25 -13.93 10.04 84.04 0.84 -13.09 16 17 H 0.06 3.39 8.06 -2.91 -0.02 3.36 16 18 C -0.04 -2.16 5.24 84.86 0.44 -1.72 16 19 N -0.96 -60.78 13.97 21.65 0.30 -60.48 16 20 Si 0.95 47.34 24.35 68.60 1.67 49.01 16 21 H -0.28 -13.21 6.70 99.48 0.67 -12.54 16 22 H -0.31 -15.91 7.11 99.48 0.71 -15.20 16 23 H -0.26 -12.55 6.46 99.48 0.64 -11.90 16 24 C 0.15 5.46 5.41 86.36 0.47 5.93 16 25 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.06 1.43 5.89 -2.39 -0.01 1.42 16 28 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 1.38 5.89 -2.39 -0.01 1.37 16 32 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.11 2.51 6.70 -2.39 -0.02 2.49 16 35 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.07 1.66 8.10 -2.39 -0.02 1.64 16 37 H 0.08 1.73 8.10 -2.39 -0.02 1.72 16 38 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 39 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 42 H 0.03 1.23 6.98 -2.38 -0.02 1.22 16 43 H 0.04 2.11 4.49 -2.38 -0.01 2.10 16 44 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 45 H 0.06 2.20 6.65 -2.39 -0.02 2.19 16 46 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -68.62 347.89 5.67 -62.94 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 0.82 Total: 12.68 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: 5.07 Total: -9.92 kcal Atomic # 7 Polarization: -89.94 SS G_CDS: -1.64 Total: -91.57 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.26 Total: -23.14 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 1.67 Total: 49.01 kcal Total: -68.62 5.67 -62.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412069321.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.137 kcal (2) G-P(sol) polarization free energy of solvation -68.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds