Wall clock time and date at job start Tue Mar 31 2020 06:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46916 * 2 1 4 4 C 1.53000 * 109.47045 * 240.00586 * 2 1 3 5 5 O 1.45200 * 109.47086 * 120.00092 * 2 1 3 6 6 C 1.34230 * 116.99670 * 60.00522 * 5 2 1 7 7 O 1.20827 * 120.00040 * 359.97438 * 6 5 2 8 8 C 1.50699 * 119.99656 * 180.02562 * 6 5 2 9 9 C 1.53002 * 109.46722 * 179.97438 * 8 6 5 10 10 C 1.53011 * 109.46644 * 181.68123 * 9 8 6 11 11 H 1.08999 * 109.70077 * 303.64005 * 10 9 8 12 12 C 1.53627 * 109.66431 * 64.23675 * 10 9 8 13 13 C 1.53042 * 109.23827 * 174.54780 * 12 10 9 14 14 C 1.53038 * 109.53794 * 298.50884 * 13 12 10 15 15 C 1.53194 * 109.31277 * 61.36835 * 14 13 12 16 16 N 1.46925 * 109.58126 * 183.28777 * 10 9 8 17 17 C 1.36939 * 120.63391 * 6.62813 * 16 10 9 18 18 H 1.07998 * 119.99784 * 328.62965 * 17 16 10 19 19 C 1.38812 * 119.99950 * 148.63166 * 17 16 10 20 20 N 1.31626 * 120.00165 * 336.96256 * 19 17 16 21 21 Si 1.86795 * 120.00054 * 156.69052 * 19 17 16 22 22 H 1.48504 * 109.47121 * 180.27365 * 21 19 17 23 23 H 1.48502 * 109.47269 * 300.27431 * 21 19 17 24 24 H 1.48498 * 109.47171 * 60.27372 * 21 19 17 25 25 H 1.08999 * 109.46939 * 300.00021 * 1 2 3 26 26 H 1.09004 * 109.46997 * 59.99864 * 1 2 3 27 27 H 1.08997 * 109.47068 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46942 * 179.97438 * 3 2 1 29 29 H 1.08992 * 109.47714 * 300.00038 * 3 2 1 30 30 H 1.09003 * 109.46922 * 60.00503 * 3 2 1 31 31 H 1.08997 * 109.46949 * 299.99781 * 4 2 1 32 32 H 1.08995 * 109.47558 * 59.99677 * 4 2 1 33 33 H 1.09003 * 109.47305 * 180.02562 * 4 2 1 34 34 H 1.08998 * 109.47708 * 59.99572 * 8 6 5 35 35 H 1.09000 * 109.47177 * 299.99539 * 8 6 5 36 36 H 1.09001 * 109.46950 * 61.68838 * 9 8 6 37 37 H 1.08990 * 109.47504 * 301.67834 * 9 8 6 38 38 H 1.08998 * 109.62897 * 54.55532 * 12 10 9 39 39 H 1.08998 * 109.45739 * 294.43282 * 12 10 9 40 40 H 1.09003 * 109.45470 * 178.49302 * 13 12 10 41 41 H 1.08996 * 109.46226 * 58.53292 * 13 12 10 42 42 H 1.09001 * 109.49854 * 301.41710 * 14 13 12 43 43 H 1.08993 * 109.52513 * 181.33518 * 14 13 12 44 44 H 1.09001 * 109.58474 * 185.57577 * 15 14 13 45 45 H 1.09003 * 109.70115 * 65.22259 * 15 14 13 46 46 H 0.97005 * 119.99459 * 354.15724 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6534 -1.9685 1.3377 7 8 0.9561 -2.5025 0.5080 8 6 2.1174 -2.7435 2.5440 9 6 1.5700 -4.1705 2.4747 10 6 2.0062 -4.9450 3.7201 11 1 3.0927 -4.9226 3.8050 12 6 1.3749 -4.3126 4.9697 13 6 1.7056 -5.1724 6.1919 14 6 1.1130 -6.5715 6.0089 15 6 1.7362 -7.2280 4.7730 16 7 1.5488 -6.3376 3.6193 17 6 0.9641 -6.7985 2.4700 18 1 0.3835 -6.1285 1.8533 19 6 1.1176 -8.1269 2.0977 20 7 2.1417 -8.8219 2.5457 21 14 -0.1334 -8.9306 0.9670 22 1 0.2516 -10.3449 0.7284 23 1 -1.4757 -8.8831 1.6006 24 1 -0.1708 -8.2027 -0.3268 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.6767 -1.7488 -1.2494 32 1 1.6767 -0.2073 -2.1393 33 1 3.1300 -0.7215 -1.2491 34 1 1.7532 -2.2585 3.4497 35 1 3.2069 -2.7723 2.5603 36 1 1.9580 -4.6657 1.5845 37 1 0.4815 -4.1403 2.4285 38 1 0.2934 -4.2573 4.8455 39 1 1.7766 -3.3093 5.1113 40 1 1.2818 -4.7125 7.0847 41 1 2.7874 -5.2477 6.3010 42 1 0.0339 -6.4949 5.8750 43 1 1.3282 -7.1763 6.8896 44 1 1.2472 -8.1830 4.5808 45 1 2.8011 -7.3899 4.9405 46 1 2.8339 -8.3848 3.0661 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425466205.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:56 Heat of formation + Delta-G solvation = -92.155926 kcal Electronic energy + Delta-G solvation = -23660.960417 eV Core-core repulsion = 20357.411459 eV Total energy + Delta-G solvation = -3303.548958 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.72185 -38.12150 -36.93745 -34.15312 -33.47212 -33.18244 -29.91445 -29.11314 -27.54512 -27.49080 -25.23084 -24.58891 -22.17653 -21.68088 -20.14809 -19.45163 -19.07874 -17.28085 -16.64717 -16.41820 -16.15979 -14.83603 -14.62947 -14.19256 -13.93826 -13.78710 -13.68820 -13.42838 -13.39704 -13.18448 -12.68099 -12.60551 -12.27383 -12.01514 -12.00752 -11.96369 -11.47620 -11.42653 -11.29453 -11.12375 -11.01108 -10.69234 -10.45735 -10.39404 -10.17469 -10.14724 -9.98106 -9.83720 -9.73399 -9.61631 -9.00972 -8.29804 -6.77504 -5.95634 -3.18083 2.43959 2.77310 3.56292 3.57878 3.75952 4.59699 4.63481 4.64245 4.76477 4.82653 5.06172 5.31875 5.31947 5.39638 5.44047 5.50240 5.54218 5.56924 5.58712 5.62577 5.70528 5.70957 5.72897 5.83872 5.94896 5.97983 6.16201 6.19066 6.21444 6.24569 6.34374 6.41486 6.55285 6.61247 6.64688 6.67586 6.77356 6.98703 7.09920 7.18333 7.28943 8.03189 8.15149 8.67704 9.20416 9.93428 10.38784 11.30286 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.016809 B = 0.004684 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.417274 B = 5976.150194 C = 7211.081997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.115 3.885 3 C -0.139 4.139 4 C -0.184 4.184 5 O -0.357 6.357 6 C 0.462 3.538 7 O -0.496 6.496 8 C -0.115 4.115 9 C -0.092 4.092 10 C 0.177 3.823 11 H 0.023 0.977 12 C -0.133 4.133 13 C -0.109 4.109 14 C -0.138 4.138 15 C 0.153 3.847 16 N -0.594 5.594 17 C -0.345 4.345 18 H 0.060 0.940 19 C -0.023 4.023 20 N -0.919 5.919 21 Si 1.062 2.938 22 H -0.287 1.287 23 H -0.294 1.294 24 H -0.292 1.292 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.049 0.951 40 H 0.045 0.955 41 H 0.052 0.948 42 H 0.056 0.944 43 H 0.047 0.953 44 H 0.075 0.925 45 H 0.015 0.985 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.132 17.873 -0.152 17.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.079 3.921 3 C -0.196 4.196 4 C -0.241 4.241 5 O -0.276 6.276 6 C 0.305 3.695 7 O -0.383 6.383 8 C -0.153 4.153 9 C -0.130 4.130 10 C 0.070 3.930 11 H 0.041 0.959 12 C -0.172 4.172 13 C -0.147 4.147 14 C -0.177 4.177 15 C 0.027 3.973 16 N -0.318 5.318 17 C -0.474 4.474 18 H 0.078 0.922 19 C -0.225 4.225 20 N -0.559 5.559 21 Si 0.892 3.108 22 H -0.212 1.212 23 H -0.221 1.221 24 H -0.220 1.220 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.104 0.896 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.094 0.906 45 H 0.033 0.967 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.538 16.282 -1.188 16.335 hybrid contribution 0.403 1.577 0.631 1.746 sum -0.135 17.859 -0.557 17.869 Atomic orbital electron populations 1.22488 0.94178 1.04952 1.02394 1.22115 0.94340 0.92160 0.83484 1.21837 1.02119 0.92889 1.02801 1.22490 1.01607 1.03463 0.96513 1.86560 1.70175 1.26024 1.44805 1.23917 0.77486 0.80106 0.87980 1.90595 1.34868 1.69650 1.43155 1.21601 1.03227 0.96659 0.93831 1.21471 1.01593 0.89801 1.00124 1.20471 0.94886 0.86268 0.91361 0.95898 1.22195 1.01078 0.97326 0.96616 1.21381 0.99978 0.96412 0.96895 1.22067 1.00615 0.95925 0.99105 1.20914 0.96491 0.94575 0.85271 1.44133 1.70365 1.05829 1.11507 1.19961 1.28019 0.97554 1.01893 0.92193 1.25835 1.00135 0.95512 1.01027 1.70779 1.08338 1.40026 1.36762 0.83566 0.75401 0.76199 0.75644 1.21213 1.22124 1.21952 0.92149 0.91304 0.89574 0.91576 0.90587 0.91612 0.89531 0.91300 0.92092 0.88187 0.88263 0.90104 0.91116 0.92261 0.93204 0.93672 0.92950 0.92515 0.93392 0.90648 0.96706 0.92104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.10 8.37 37.16 0.31 -1.78 16 2 C 0.12 1.34 1.13 -90.62 -0.10 1.24 16 3 C -0.14 -1.20 8.85 37.16 0.33 -0.87 16 4 C -0.18 -2.15 8.37 37.16 0.31 -1.84 16 5 O -0.36 -4.91 9.89 -39.26 -0.39 -5.30 16 6 C 0.46 7.18 7.27 36.01 0.26 7.44 16 7 O -0.50 -8.99 11.48 -18.75 -0.22 -9.21 16 8 C -0.12 -1.69 5.60 -27.88 -0.16 -1.84 16 9 C -0.09 -1.77 2.76 -26.72 -0.07 -1.84 16 10 C 0.18 3.59 2.99 -67.37 -0.20 3.39 16 11 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 12 C -0.13 -2.28 4.99 -26.38 -0.13 -2.41 16 13 C -0.11 -1.83 5.88 -26.69 -0.16 -1.99 16 14 C -0.14 -2.64 6.08 -26.61 -0.16 -2.80 16 15 C 0.15 3.60 4.70 -3.71 -0.02 3.58 16 16 N -0.59 -14.67 2.80 -164.51 -0.46 -15.13 16 17 C -0.35 -9.53 8.38 -15.06 -0.13 -9.65 16 18 H 0.06 1.68 6.40 -52.49 -0.34 1.35 16 19 C -0.02 -0.66 4.72 -17.43 -0.08 -0.74 16 20 N -0.92 -27.67 12.51 55.49 0.69 -26.98 16 21 Si 1.06 25.86 29.98 -169.99 -5.10 20.76 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.09 1.22 5.89 -51.93 -0.31 0.91 16 28 H 0.07 0.55 8.14 -51.92 -0.42 0.12 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 1.26 5.89 -51.93 -0.31 0.95 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.10 1.27 6.60 -51.93 -0.34 0.93 16 35 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 36 H 0.08 1.80 7.43 -51.93 -0.39 1.41 16 37 H 0.07 1.47 7.54 -51.93 -0.39 1.08 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.05 0.71 6.82 -51.93 -0.35 0.36 16 40 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.08 1.99 6.50 -51.93 -0.34 1.65 16 45 H 0.01 0.36 7.82 -51.93 -0.41 -0.05 16 46 H 0.27 8.12 6.69 -40.82 -0.27 7.84 16 LS Contribution 349.63 15.07 5.27 5.27 Total: -1.00 -31.00 349.63 -8.35 -39.35 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -8.15 Total: 1.36 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: 0.00 Total: -10.12 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: 0.23 Total: -42.11 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -0.60 Total: -14.50 kcal Atomic # 14 Polarization: 25.86 SS G_CDS: -5.10 Total: 20.76 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.00 -8.35 -39.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425466205.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.806 kcal (2) G-P(sol) polarization free energy of solvation -31.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds