Wall clock time and date at job start Tue Mar 31 2020 06:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99603 * 2 1 3 5 5 O 1.45206 * 109.46989 * 119.99587 * 2 1 3 6 6 C 1.34224 * 117.00077 * 60.00071 * 5 2 1 7 7 O 1.20833 * 120.00103 * 359.97438 * 6 5 2 8 8 C 1.50696 * 120.00302 * 180.02562 * 6 5 2 9 9 C 1.53002 * 109.46941 * 299.99657 * 8 6 5 10 10 C 1.52997 * 109.47493 * 179.97438 * 9 8 6 11 11 C 1.53006 * 109.46769 * 59.99990 * 10 9 8 12 12 N 1.46896 * 109.46933 * 60.00714 * 11 10 9 13 13 C 1.46895 * 111.00289 * 84.99861 * 12 11 10 14 14 C 1.50709 * 109.46936 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99813 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99876 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99992 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99898 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.46902 * 90.00426 * 18 16 14 20 20 H 1.48499 * 109.46946 * 209.99761 * 18 16 14 21 21 H 1.48493 * 109.47393 * 330.00139 * 18 16 14 22 22 C 1.52998 * 109.47286 * 299.99910 * 11 10 9 23 23 C 1.52997 * 109.46630 * 60.00179 * 22 11 10 24 24 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 25 25 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 26 26 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 29 29 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 30 30 H 1.09001 * 109.46832 * 300.00199 * 4 2 1 31 31 H 1.09002 * 109.47153 * 60.00008 * 4 2 1 32 32 H 1.08996 * 109.46952 * 180.02562 * 4 2 1 33 33 H 1.08995 * 109.47473 * 59.99636 * 8 6 5 34 34 H 1.09003 * 109.47318 * 300.00255 * 9 8 6 35 35 H 1.09008 * 109.46908 * 59.99812 * 9 8 6 36 36 H 1.09003 * 109.47116 * 300.00464 * 10 9 8 37 37 H 1.09001 * 109.47677 * 179.97438 * 10 9 8 38 38 H 1.09003 * 109.46515 * 179.97438 * 11 10 9 39 39 H 1.00897 * 111.00076 * 321.03876 * 12 11 10 40 40 H 1.09002 * 109.47044 * 299.99617 * 13 12 11 41 41 H 1.09003 * 109.47339 * 60.00154 * 13 12 11 42 42 H 0.96996 * 120.00259 * 180.02562 * 17 16 14 43 43 H 1.09000 * 109.46861 * 300.00418 * 22 11 10 44 44 H 1.08995 * 109.47244 * 179.97438 * 22 11 10 45 45 H 1.09005 * 109.47056 * 179.97438 * 23 22 11 46 46 H 1.09000 * 109.47303 * 60.00510 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1857 6 6 1.6533 -1.9683 1.3381 7 8 0.9559 -2.5025 0.5084 8 6 2.1172 -2.7432 2.5444 9 6 3.6465 -2.7838 2.5673 10 6 4.1177 -3.5700 3.7923 11 6 3.5706 -4.9972 3.7236 12 7 4.0615 -5.6515 2.5034 13 6 5.3907 -6.2386 2.7191 14 6 5.8600 -6.8998 1.4487 15 1 5.2336 -6.8849 0.5691 16 6 7.0893 -7.5228 1.4093 17 7 7.4991 -8.0993 0.3006 18 14 8.1735 -7.5466 2.9303 19 1 7.8655 -8.7535 3.7388 20 1 9.6005 -7.5764 2.5206 21 1 7.9164 -6.3291 3.7407 22 6 2.0414 -4.9567 3.7007 23 6 1.5703 -4.1705 2.4757 24 1 -0.3633 0.5139 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6766 -1.7490 -1.2491 31 1 1.6767 -0.2075 -2.1392 32 1 3.1300 -0.7217 -1.2489 33 1 1.7531 -2.2582 3.4500 34 1 4.0108 -3.2688 1.6616 35 1 4.0362 -1.7669 2.6166 36 1 3.7534 -3.0845 4.6977 37 1 5.2072 -3.5992 3.8084 38 1 3.9067 -5.5574 4.5961 39 1 4.0725 -5.0072 1.7270 40 1 6.0928 -5.4542 3.0017 41 1 5.3352 -6.9808 3.5155 42 1 8.3638 -8.5379 0.2729 43 1 1.6772 -4.4712 4.6062 44 1 1.6517 -5.9734 3.6513 45 1 0.4808 -4.1420 2.4591 46 1 1.9344 -4.6560 1.5703 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425974594.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:30 Heat of formation + Delta-G solvation = -108.848056 kcal Electronic energy + Delta-G solvation = -23592.401207 eV Core-core repulsion = 20288.128424 eV Total energy + Delta-G solvation = -3304.272783 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.03137 -38.90545 -36.94482 -34.41866 -33.92848 -32.24399 -30.66513 -29.79027 -27.61308 -27.54503 -26.41354 -24.13097 -22.57055 -21.47498 -21.24761 -19.57015 -18.72197 -17.18506 -16.83103 -16.59195 -16.00714 -15.61187 -14.64334 -14.54384 -14.41166 -14.06340 -13.89023 -13.82246 -13.14883 -12.82371 -12.74066 -12.54145 -12.45175 -12.26567 -12.14799 -12.06625 -11.98767 -11.88103 -11.76066 -11.51981 -11.27897 -10.99836 -10.68591 -10.59792 -10.48239 -10.41180 -10.20540 -10.07832 -9.77767 -9.67887 -9.25135 -8.57619 -7.40409 -6.04228 -4.01966 2.25679 2.63597 3.29243 3.36378 3.38107 4.42866 4.49218 4.55287 4.56956 4.71834 4.74863 4.80344 5.10590 5.14155 5.26450 5.28457 5.32762 5.35239 5.40720 5.47585 5.55087 5.56072 5.61735 5.64273 5.66957 5.70904 5.79426 5.89836 5.99673 6.06011 6.13969 6.16946 6.26228 6.28813 6.37696 6.51058 6.56384 6.65521 6.82398 7.07326 7.63754 7.85990 7.94399 8.37780 8.67959 9.04426 9.57859 11.09189 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.021500 B = 0.003935 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.987073 B = 7113.950111 C = 7619.866043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.115 3.885 3 C -0.140 4.140 4 C -0.185 4.185 5 O -0.351 6.351 6 C 0.468 3.532 7 O -0.500 6.500 8 C -0.077 4.077 9 C -0.111 4.111 10 C -0.147 4.147 11 C 0.079 3.921 12 N -0.673 5.673 13 C 0.163 3.837 14 C -0.515 4.515 15 H 0.078 0.922 16 C 0.068 3.932 17 N -0.901 5.901 18 Si 0.878 3.122 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.268 1.268 22 C -0.102 4.102 23 C -0.102 4.102 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.102 0.898 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.335 0.665 40 H -0.016 1.016 41 H 0.021 0.979 42 H 0.263 0.737 43 H 0.056 0.944 44 H 0.074 0.926 45 H 0.064 0.936 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.622 18.550 4.466 22.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.079 3.921 3 C -0.197 4.197 4 C -0.242 4.242 5 O -0.269 6.269 6 C 0.311 3.689 7 O -0.387 6.387 8 C -0.096 4.096 9 C -0.149 4.149 10 C -0.187 4.187 11 C -0.033 4.033 12 N -0.305 5.305 13 C 0.035 3.965 14 C -0.554 4.554 15 H 0.096 0.904 16 C -0.133 4.133 17 N -0.540 5.540 18 Si 0.705 3.295 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.193 1.193 22 C -0.140 4.140 23 C -0.139 4.139 24 H 0.078 0.922 25 H 0.088 0.912 26 H 0.103 0.897 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.120 0.880 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.155 0.845 40 H 0.001 0.999 41 H 0.039 0.961 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.093 0.907 45 H 0.083 0.917 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.009 17.717 4.213 22.380 hybrid contribution 1.236 0.780 0.610 1.583 sum -11.773 18.497 4.823 22.450 Atomic orbital electron populations 1.22484 0.94235 1.04748 1.02464 1.22153 0.94224 0.92267 0.83441 1.21844 1.02342 0.92744 1.02800 1.22498 1.01971 1.03292 0.96404 1.86560 1.69897 1.25667 1.44786 1.23818 0.77056 0.80286 0.87702 1.90571 1.35257 1.69786 1.43130 1.21179 0.98237 0.96172 0.94021 1.21509 0.91875 1.01258 1.00216 1.22212 1.01437 0.97673 0.97345 1.21605 0.94456 0.91957 0.95237 1.60629 1.28887 1.36743 1.04259 1.20024 0.84921 0.93572 0.97946 1.21083 1.02532 1.34415 0.97326 0.90393 1.24911 0.97564 0.95000 0.95873 1.69903 1.20709 1.36843 1.26532 0.86824 0.79940 0.78924 0.83814 1.20190 1.21295 1.19261 1.21523 0.95515 1.00539 0.96472 1.21410 1.00126 0.91549 1.00831 0.92204 0.91199 0.89727 0.91407 0.90512 0.91635 0.89586 0.91227 0.91800 0.87999 0.90816 0.90922 0.91836 0.91316 0.90877 0.84458 0.99851 0.96102 0.92696 0.92516 0.90729 0.91723 0.89770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.80 8.37 37.16 0.31 -1.49 16 2 C 0.12 1.22 1.13 -90.62 -0.10 1.12 16 3 C -0.14 -1.13 8.85 37.16 0.33 -0.80 16 4 C -0.18 -2.06 8.37 37.16 0.31 -1.75 16 5 O -0.35 -4.38 9.79 -39.24 -0.38 -4.76 16 6 C 0.47 6.31 6.57 36.00 0.24 6.54 16 7 O -0.50 -7.70 11.49 -18.76 -0.22 -7.91 16 8 C -0.08 -0.94 2.63 -91.77 -0.24 -1.19 16 9 C -0.11 -1.46 4.88 -26.73 -0.13 -1.59 16 10 C -0.15 -2.02 5.52 -26.73 -0.15 -2.16 16 11 C 0.08 1.24 2.86 -67.71 -0.19 1.05 16 12 N -0.67 -13.59 5.75 -107.99 -0.62 -14.21 16 13 C 0.16 3.92 4.31 -4.97 -0.02 3.90 16 14 C -0.52 -14.81 9.87 -34.44 -0.34 -15.15 16 15 H 0.08 2.45 8.06 -52.49 -0.42 2.02 16 16 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 17 N -0.90 -27.89 13.96 55.43 0.77 -27.11 16 18 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 21 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 22 C -0.10 -1.36 5.64 -26.73 -0.15 -1.51 16 23 C -0.10 -1.37 4.26 -26.73 -0.11 -1.48 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.08 1.02 5.89 -51.93 -0.31 0.71 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.09 1.16 5.89 -51.93 -0.31 0.86 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.07 1.12 6.26 -51.93 -0.33 0.80 16 35 H 0.07 0.87 8.11 -51.92 -0.42 0.45 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 1.04 7.45 -51.93 -0.39 0.66 16 38 H 0.07 1.18 7.80 -51.93 -0.40 0.78 16 39 H 0.34 6.74 5.56 -39.29 -0.22 6.52 16 40 H -0.02 -0.39 6.49 -51.93 -0.34 -0.72 16 41 H 0.02 0.51 7.48 -51.93 -0.39 0.12 16 42 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.06 0.82 8.10 -51.93 -0.42 0.40 16 46 H 0.08 1.35 7.17 -51.93 -0.37 0.98 16 LS Contribution 350.05 15.07 5.28 5.28 Total: -1.00 -31.29 350.05 -8.32 -39.61 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -8.13 Total: 4.77 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: -0.35 Total: -12.61 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: 0.15 Total: -41.32 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: -0.60 Total: -12.68 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.29 -8.32 -39.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425974594.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.235 kcal (2) G-P(sol) polarization free energy of solvation -31.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds