Wall clock time and date at job start Tue Mar 31 2020 05:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34234 * 117.00196 * 2 1 4 4 O 1.20821 * 119.99784 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00280 * 180.02562 * 3 2 1 6 6 H 1.08999 * 110.27329 * 8.92560 * 5 3 2 7 7 C 1.54596 * 110.31218 * 131.11753 * 5 3 2 8 8 C 1.54934 * 102.92209 * 140.86792 * 7 5 3 9 9 N 1.48529 * 103.23061 * 322.59278 * 8 7 5 10 10 C 1.46899 * 111.00061 * 159.71616 * 9 8 7 11 11 C 1.53002 * 109.46999 * 56.43861 * 10 9 8 12 12 C 1.52997 * 109.46930 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47012 * 179.97438 * 12 11 10 14 14 H 1.07995 * 119.99934 * 0.02562 * 13 12 11 15 15 C 1.37885 * 120.00179 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99679 * 0.02562 * 15 13 12 17 17 Si 1.86792 * 120.00141 * 180.02562 * 15 13 12 18 18 H 1.48509 * 109.47097 * 89.99946 * 17 15 13 19 19 H 1.48501 * 109.47144 * 210.00003 * 17 15 13 20 20 H 1.48499 * 109.47201 * 330.00311 * 17 15 13 21 21 C 1.47904 * 105.81974 * 39.20103 * 9 8 7 22 22 H 1.08998 * 110.07729 * 94.12011 * 21 9 8 23 23 C 1.53008 * 109.91428 * 215.31779 * 21 9 8 24 24 C 1.53000 * 109.47125 * 305.76382 * 23 21 9 25 25 C 1.52998 * 109.46786 * 185.76548 * 23 21 9 26 26 H 1.08997 * 109.47002 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47121 * 300.00264 * 1 2 3 28 28 H 1.08999 * 109.47206 * 60.00356 * 1 2 3 29 29 H 1.08997 * 110.72586 * 259.23580 * 7 5 3 30 30 H 1.09005 * 110.72058 * 22.51657 * 7 5 3 31 31 H 1.09011 * 110.66189 * 81.02171 * 8 7 5 32 32 H 1.08994 * 110.67127 * 203.98311 * 8 7 5 33 33 H 1.09002 * 109.47199 * 176.43133 * 10 9 8 34 34 H 1.08997 * 109.47333 * 296.43356 * 10 9 8 35 35 H 1.08998 * 109.47012 * 299.99772 * 11 10 9 36 36 H 1.08997 * 109.47490 * 59.99592 * 11 10 9 37 37 H 1.08998 * 109.47262 * 299.99833 * 12 11 10 38 38 H 1.09005 * 109.47556 * 60.00122 * 12 11 10 39 39 H 0.97000 * 119.99524 * 180.02562 * 16 15 13 40 40 H 1.08994 * 109.46853 * 65.76947 * 23 21 9 41 41 H 1.08993 * 109.47354 * 301.44988 * 24 23 21 42 42 H 1.09002 * 109.46955 * 61.45233 * 24 23 21 43 43 H 1.09002 * 109.46718 * 181.44628 * 24 23 21 44 44 H 1.09001 * 109.47270 * 189.44206 * 25 23 21 45 45 H 1.09005 * 109.47188 * 309.44434 * 25 23 21 46 46 H 1.08999 * 109.47493 * 69.43757 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9963 0.2860 -0.1596 7 6 4.0519 2.2553 -1.0928 8 6 5.2345 2.9823 -0.4049 9 7 4.7725 3.1299 0.9990 10 6 5.9066 3.3524 1.9058 11 6 6.6970 4.5779 1.4428 12 6 7.8777 4.8100 2.3876 13 6 8.6566 6.0168 1.9312 14 1 8.3407 6.5636 1.0552 15 6 9.7725 6.4226 2.6321 16 7 10.1575 5.7563 3.6987 17 14 10.7375 7.9188 2.0668 18 1 10.1909 9.1358 2.7192 19 1 12.1657 7.7564 2.4395 20 1 10.6228 8.0537 0.5924 21 6 4.0708 1.8699 1.3271 22 1 4.7573 1.1738 1.8089 23 6 2.8868 2.1585 2.2523 24 6 3.3746 2.9326 3.4785 25 6 2.2562 0.8384 2.7002 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 4.3929 1.7126 -1.9744 30 1 3.2644 2.9621 -1.3544 31 1 6.1385 2.3748 -0.4505 32 1 5.4046 3.9575 -0.8611 33 1 5.5358 3.5201 2.9170 34 1 6.5558 2.4769 1.8974 35 1 7.0678 4.4103 0.4316 36 1 6.0478 5.4534 1.4512 37 1 7.5066 4.9778 3.3987 38 1 8.5272 3.9346 2.3796 39 1 10.9423 6.0421 4.1919 40 1 2.1452 2.7528 1.7186 41 1 4.1349 2.3492 3.9977 42 1 3.8006 3.8845 3.1614 43 1 2.5356 3.1158 4.1499 44 1 1.3189 1.0409 3.2185 45 1 2.0615 0.2143 1.8280 46 1 2.9388 0.3195 3.3731 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429385390.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:27 Heat of formation + Delta-G solvation = -91.247066 kcal Electronic energy + Delta-G solvation = -23663.700072 eV Core-core repulsion = 20360.190525 eV Total energy + Delta-G solvation = -3303.509547 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.38845 -39.04890 -36.58322 -34.92948 -34.20930 -32.62030 -30.45266 -28.76456 -27.66140 -27.07041 -26.25235 -23.64137 -22.59904 -21.44386 -20.77955 -19.99364 -19.30334 -17.69932 -17.05790 -16.68068 -16.34664 -15.59294 -15.10878 -14.80309 -14.42515 -14.09061 -13.94516 -13.49676 -13.22537 -12.94099 -12.63010 -12.44591 -12.37638 -12.29230 -12.08760 -11.94911 -11.66264 -11.59132 -11.21914 -11.13338 -11.08646 -10.88094 -10.78851 -10.69953 -10.49635 -10.43313 -10.24599 -9.98664 -9.59917 -9.31530 -9.02615 -8.32139 -8.16161 -5.97596 -3.99439 2.05249 2.50867 3.33862 3.39865 3.43399 4.05258 4.34408 4.40994 4.49171 4.69402 4.85529 4.91899 4.94283 5.03880 5.10486 5.23885 5.30339 5.33103 5.38309 5.40497 5.55433 5.62657 5.69688 5.75554 5.80319 5.92125 5.95680 5.99022 6.03527 6.10300 6.15837 6.18628 6.33129 6.50970 6.56499 6.70611 6.83101 7.05107 7.23713 7.38238 7.62482 7.70766 7.85646 8.02988 8.46364 9.07778 9.64445 11.13871 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.034930 B = 0.003348 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.415478 B = 8361.470552 C = 8809.602259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.363 6.363 3 C 0.479 3.521 4 O -0.493 6.493 5 C -0.093 4.093 6 H 0.103 0.897 7 C -0.112 4.112 8 C 0.039 3.961 9 N -0.505 5.505 10 C 0.040 3.960 11 C -0.107 4.107 12 C 0.023 3.977 13 C -0.518 4.518 14 H 0.055 0.945 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.087 3.913 22 H 0.065 0.935 23 C -0.106 4.106 24 C -0.144 4.144 25 C -0.171 4.171 26 H 0.099 0.901 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.049 0.951 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.029 0.971 35 H 0.047 0.953 36 H 0.056 0.944 37 H 0.016 0.984 38 H 0.013 0.987 39 H 0.260 0.740 40 H 0.098 0.902 41 H 0.049 0.951 42 H 0.075 0.925 43 H 0.047 0.953 44 H 0.054 0.946 45 H 0.067 0.933 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.850 -14.033 -6.965 23.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.280 6.280 3 C 0.323 3.677 4 O -0.380 6.380 5 C -0.113 4.113 6 H 0.121 0.879 7 C -0.150 4.150 8 C -0.089 4.089 9 N -0.229 5.229 10 C -0.087 4.087 11 C -0.145 4.145 12 C -0.015 4.015 13 C -0.556 4.556 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.022 4.022 22 H 0.082 0.918 23 C -0.125 4.125 24 C -0.201 4.201 25 C -0.228 4.228 26 H 0.117 0.883 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.068 0.932 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.048 0.952 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.034 0.966 38 H 0.031 0.969 39 H 0.069 0.931 40 H 0.116 0.884 41 H 0.068 0.932 42 H 0.094 0.906 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.085 0.915 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.279 -13.281 -6.759 23.584 hybrid contribution 1.007 0.068 -0.168 1.023 sum -17.272 -13.213 -6.927 22.824 Atomic orbital electron populations 1.23237 0.76647 1.03522 1.02618 1.86552 1.23279 1.34003 1.84169 1.23293 0.91658 0.81232 0.71566 1.90633 1.66823 1.36101 1.44418 1.22029 0.87842 1.02321 0.99068 0.87892 1.22606 0.99338 0.97159 0.95936 1.23193 0.95320 1.00889 0.89448 1.64770 1.24914 1.31024 1.02222 1.22702 0.90114 0.98866 0.97059 1.21676 0.97622 0.95193 0.99986 1.19061 0.91536 0.96593 0.94297 1.21253 1.10456 1.12155 1.11743 0.92701 1.25028 0.97482 0.96957 0.95054 1.69970 1.25679 1.39945 1.18024 0.86605 0.79182 0.83259 0.79023 1.20666 1.21282 1.19891 1.22310 0.96133 0.91450 0.92293 0.91756 1.21539 0.97202 0.96861 0.96855 1.21894 1.00462 1.01350 0.96397 1.22278 1.00841 0.97655 1.02052 0.88267 0.91827 0.91955 0.90290 0.89407 0.93228 0.89016 0.90008 0.95230 0.93437 0.92551 0.96612 0.96878 0.93064 0.88357 0.93208 0.90620 0.93381 0.92695 0.91464 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.68 8.77 -39.27 -0.34 -4.02 16 3 C 0.48 5.68 4.01 36.00 0.14 5.83 16 4 O -0.49 -7.08 13.73 -18.75 -0.26 -7.34 16 5 C -0.09 -1.04 3.28 -90.42 -0.30 -1.34 16 6 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 7 C -0.11 -1.26 6.56 -24.87 -0.16 -1.42 16 8 C 0.04 0.52 5.26 -1.90 -0.01 0.51 16 9 N -0.51 -7.61 4.53 -222.57 -1.01 -8.61 16 10 C 0.04 0.69 4.36 -3.82 -0.02 0.67 16 11 C -0.11 -2.21 4.92 -26.73 -0.13 -2.34 16 12 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 13 C -0.52 -14.80 9.11 -34.44 -0.31 -15.12 16 14 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 15 C 0.06 1.61 5.46 -17.81 -0.10 1.51 16 16 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 17 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 21 C 0.09 1.13 2.17 -66.64 -0.14 0.99 16 22 H 0.06 0.82 7.64 -51.93 -0.40 0.43 16 23 C -0.11 -1.38 2.20 -90.62 -0.20 -1.58 16 24 C -0.14 -1.94 7.70 37.16 0.29 -1.66 16 25 C -0.17 -1.87 8.72 37.16 0.32 -1.55 16 26 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.49 8.13 -51.93 -0.42 0.06 16 28 H 0.06 0.46 8.13 -51.93 -0.42 0.03 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.09 1.09 7.32 -51.93 -0.38 0.71 16 31 H 0.05 0.65 8.02 -51.92 -0.42 0.24 16 32 H 0.09 1.27 7.66 -51.93 -0.40 0.88 16 33 H 0.08 1.43 5.24 -51.93 -0.27 1.16 16 34 H 0.03 0.51 7.93 -51.93 -0.41 0.10 16 35 H 0.05 0.96 6.86 -51.93 -0.36 0.60 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.10 1.48 5.45 -51.93 -0.28 1.20 16 41 H 0.05 0.65 7.86 -51.93 -0.41 0.25 16 42 H 0.07 1.16 6.16 -51.93 -0.32 0.84 16 43 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.07 0.71 4.01 -51.93 -0.21 0.50 16 46 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 LS Contribution 350.15 15.07 5.28 5.28 Total: -1.00 -31.52 350.15 -8.35 -39.87 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -8.04 Total: -1.88 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: 0.31 Total: -13.72 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: -0.27 Total: -35.04 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: -0.60 Total: -11.36 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.52 -8.35 -39.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429385390.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.375 kcal (2) G-P(sol) polarization free energy of solvation -31.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds