Wall clock time and date at job start Tue Mar 31 2020 05:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47124 * 2 1 4 4 C 1.53001 * 109.46844 * 185.28338 * 3 2 1 5 5 H 1.09003 * 109.47049 * 181.62959 * 4 3 2 6 6 C 1.52994 * 109.47463 * 301.62885 * 4 3 2 7 7 C 1.52992 * 109.47487 * 295.15632 * 6 4 3 8 8 C 1.53002 * 109.47687 * 175.67455 * 7 6 4 9 9 C 1.53000 * 109.47375 * 295.67828 * 7 6 4 10 10 C 1.50701 * 109.46742 * 61.63222 * 4 3 2 11 11 O 1.21276 * 119.99757 * 263.20514 * 10 4 3 12 12 N 1.34778 * 120.00073 * 83.20791 * 10 4 3 13 13 C 1.47587 * 134.49271 * 175.94913 * 12 10 4 14 14 C 1.53948 * 86.11374 * 155.35600 * 13 12 10 15 15 O 1.42898 * 113.74225 * 269.14952 * 14 13 12 16 16 C 1.50704 * 113.73423 * 137.95364 * 14 13 12 17 17 H 1.07993 * 120.00246 * 1.92477 * 16 14 13 18 18 C 1.37879 * 119.99477 * 181.92236 * 16 14 13 19 19 N 1.31516 * 120.00190 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 120.00018 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47507 * 180.02562 * 20 18 16 22 22 H 1.48497 * 109.47233 * 300.00419 * 20 18 16 23 23 H 1.48509 * 109.46748 * 59.99959 * 20 18 16 24 24 C 1.47811 * 134.45783 * 355.81463 * 12 10 4 25 25 H 1.09006 * 109.46770 * 300.00000 * 1 2 3 26 26 H 1.08998 * 109.47510 * 59.99605 * 1 2 3 27 27 H 1.08998 * 109.47521 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47067 * 240.00145 * 2 1 3 29 29 H 1.09004 * 109.47076 * 120.00413 * 2 1 3 30 30 H 1.09008 * 109.46773 * 65.29183 * 3 2 1 31 31 H 1.08994 * 109.47709 * 305.28796 * 3 2 1 32 32 H 1.08997 * 109.47156 * 55.16162 * 6 4 3 33 33 H 1.09008 * 109.47017 * 175.15340 * 6 4 3 34 34 H 1.09010 * 109.47073 * 55.67422 * 7 6 4 35 35 H 1.08997 * 109.47012 * 59.99921 * 8 7 6 36 36 H 1.08999 * 109.47280 * 180.02562 * 8 7 6 37 37 H 1.09004 * 109.46788 * 300.00370 * 8 7 6 38 38 H 1.08997 * 109.47347 * 180.02562 * 9 7 6 39 39 H 1.09010 * 109.46689 * 299.99830 * 9 7 6 40 40 H 1.08997 * 109.47240 * 59.99257 * 9 7 6 41 41 H 1.09002 * 113.76531 * 41.05565 * 13 12 10 42 42 H 1.09001 * 113.76498 * 269.66062 * 13 12 10 43 43 H 0.96694 * 113.99767 * 178.07839 * 15 14 13 44 44 H 0.96998 * 119.99711 * 179.97438 * 19 18 16 45 45 H 1.09004 * 113.77039 * 90.37985 * 24 12 10 46 46 H 1.09004 * 113.83652 * 318.91892 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5642 1.4444 -0.1328 5 1 3.9302 2.4708 -0.1037 6 6 4.1780 0.6513 1.0226 7 6 3.8826 1.3638 2.3439 8 6 4.4021 0.5168 3.5074 9 6 4.5778 2.7267 2.3550 10 6 3.9551 0.8087 -1.4421 11 8 4.2740 -0.3609 -1.4769 12 7 3.9503 1.5399 -2.5743 13 6 4.3342 1.2795 -3.9753 14 6 3.3479 2.4024 -4.3444 15 8 2.0203 1.9405 -4.6016 16 6 3.8622 3.3354 -5.4103 17 1 4.8283 3.1611 -5.8602 18 6 3.0991 4.4116 -5.8109 19 7 1.9227 4.6242 -5.2626 20 14 3.7367 5.5687 -7.1316 21 1 2.7354 6.6368 -7.3795 22 1 5.0116 6.1813 -6.6795 23 1 3.9704 4.8078 -8.3854 24 6 3.5559 2.9240 -2.9111 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.7561 1.9282 0.9337 31 1 1.6015 1.9830 -0.8388 32 1 3.7473 -0.3497 1.0454 33 1 5.2565 0.5796 0.8816 34 1 2.8066 1.5040 2.4485 35 1 5.4779 0.3767 3.4028 36 1 4.1912 1.0243 4.4488 37 1 3.9067 -0.4541 3.4995 38 1 4.3678 3.2341 3.2965 39 1 5.6538 2.5865 2.2504 40 1 4.2078 3.3301 1.5262 41 1 4.0353 0.2956 -4.3371 42 1 5.3744 1.5178 -4.1973 43 1 1.3910 2.6458 -4.8051 44 1 1.3861 5.3815 -5.5443 45 1 4.3670 3.6465 -2.8198 46 1 2.6367 3.2508 -2.4248 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450757852.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:01 Heat of formation + Delta-G solvation = -87.887890 kcal Electronic energy + Delta-G solvation = -23904.440586 eV Core-core repulsion = 20601.076704 eV Total energy + Delta-G solvation = -3303.363882 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.85996 -38.11313 -36.46758 -34.35339 -33.89345 -32.21493 -30.93149 -28.47084 -27.20646 -26.18445 -25.49336 -25.21954 -23.15232 -21.46662 -20.08930 -19.03584 -17.92857 -17.34820 -16.25449 -15.84928 -15.30490 -15.13917 -14.82403 -14.19858 -14.17542 -13.90433 -13.72720 -13.36640 -13.08417 -12.76377 -12.39815 -12.35991 -12.22251 -11.92558 -11.83253 -11.70256 -11.61210 -11.54543 -11.10871 -11.05422 -11.02829 -10.88337 -10.61614 -10.52412 -10.41444 -10.38200 -10.26946 -10.02070 -9.50759 -9.04559 -8.75016 -8.37649 -7.76983 -6.38711 -4.49008 3.16081 3.22003 3.24123 3.29849 3.62147 4.18911 4.73646 4.82146 4.86022 4.91890 5.11389 5.15579 5.22434 5.34040 5.49148 5.57272 5.58774 5.62997 5.69700 5.78754 5.80105 5.85085 5.94297 5.98809 6.01344 6.06736 6.08762 6.12027 6.18919 6.25173 6.27742 6.40662 6.45998 6.47565 6.52815 6.55669 6.61865 6.71114 6.74324 7.11901 7.63203 7.83484 8.53767 8.56942 8.86080 9.22210 9.43588 10.67809 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.021129 B = 0.004436 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.897085 B = 6310.723526 C = 6628.754362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C -0.107 4.107 4 C -0.102 4.102 5 H 0.087 0.913 6 C -0.095 4.095 7 C -0.099 4.099 8 C -0.145 4.145 9 C -0.150 4.150 10 C 0.535 3.465 11 O -0.565 6.565 12 N -0.633 5.633 13 C 0.110 3.890 14 C 0.240 3.760 15 O -0.572 6.572 16 C -0.538 4.538 17 H 0.070 0.930 18 C 0.073 3.927 19 N -0.898 5.898 20 Si 0.906 3.094 21 H -0.285 1.285 22 H -0.274 1.274 23 H -0.273 1.273 24 C 0.080 3.920 25 H 0.049 0.951 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.053 0.947 38 H 0.051 0.949 39 H 0.053 0.947 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.084 0.916 43 H 0.391 0.609 44 H 0.273 0.727 45 H 0.079 0.921 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.619 -1.771 12.827 12.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C -0.145 4.145 4 C -0.123 4.123 5 H 0.105 0.895 6 C -0.133 4.133 7 C -0.117 4.117 8 C -0.203 4.203 9 C -0.208 4.208 10 C 0.324 3.676 11 O -0.446 6.446 12 N -0.366 5.366 13 C -0.012 4.012 14 C 0.198 3.802 15 O -0.383 6.383 16 C -0.576 4.576 17 H 0.088 0.912 18 C -0.129 4.129 19 N -0.538 5.538 20 Si 0.733 3.267 21 H -0.210 1.210 22 H -0.199 1.199 23 H -0.199 1.199 24 C -0.043 4.043 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.102 0.898 43 H 0.245 0.755 44 H 0.083 0.917 45 H 0.097 0.903 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.890 -2.940 13.089 13.444 hybrid contribution 0.089 1.402 -0.762 1.598 sum 0.979 -1.537 12.327 12.461 Atomic orbital electron populations 1.21758 0.96141 1.01235 1.01586 1.21596 0.95423 0.96666 1.02701 1.21532 0.92768 0.97763 1.02418 1.21313 0.97543 1.00732 0.92753 0.89459 1.21493 1.00703 0.99296 0.91815 1.21178 1.00513 0.95270 0.94758 1.21818 1.01154 0.99690 0.97599 1.21914 1.00601 0.96737 1.01510 1.20173 0.77119 0.86158 0.84133 1.90607 1.51023 1.16521 1.86439 1.50245 1.62823 1.15654 1.07862 1.23418 0.99002 1.00561 0.78232 1.19825 0.81746 0.88787 0.89851 1.86066 1.20341 1.39643 1.92274 1.21484 1.04607 1.09674 1.21882 0.91191 1.25051 0.94613 0.97212 0.96052 1.69395 1.11207 1.30648 1.42559 0.86417 0.78690 0.79887 0.81691 1.21010 1.19926 1.19867 1.24303 0.98798 0.82371 0.98855 0.93196 0.92538 0.93110 0.91283 0.91984 0.91241 0.91181 0.90626 0.92019 0.90862 0.92818 0.92968 0.92765 0.93010 0.92805 0.92282 0.91315 0.89846 0.75478 0.91678 0.90282 0.91386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 37.16 0.37 -1.57 16 2 C -0.13 -1.86 5.23 -26.73 -0.14 -2.00 16 3 C -0.11 -1.55 4.70 -26.73 -0.13 -1.68 16 4 C -0.10 -1.59 2.12 -91.77 -0.19 -1.78 16 5 H 0.09 1.30 6.27 -51.93 -0.33 0.97 16 6 C -0.10 -1.31 3.33 -26.74 -0.09 -1.40 16 7 C -0.10 -1.08 2.78 -90.62 -0.25 -1.33 16 8 C -0.15 -1.40 9.19 37.16 0.34 -1.06 16 9 C -0.15 -1.56 8.94 37.16 0.33 -1.23 16 10 C 0.53 10.72 6.19 -10.98 -0.07 10.65 16 11 O -0.57 -12.84 16.26 5.56 0.09 -12.75 16 12 N -0.63 -13.34 3.61 -178.10 -0.64 -13.99 16 13 C 0.11 2.42 8.23 -2.96 -0.02 2.40 16 14 C 0.24 5.70 1.40 -90.84 -0.13 5.57 16 15 O -0.57 -14.57 13.48 -35.23 -0.48 -15.05 16 16 C -0.54 -13.42 8.61 -34.44 -0.30 -13.71 16 17 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 18 C 0.07 1.81 5.39 -17.82 -0.10 1.71 16 19 N -0.90 -22.44 11.20 55.43 0.62 -21.82 16 20 Si 0.91 19.31 29.54 -169.99 -5.02 14.29 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 23 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 24 C 0.08 1.69 7.97 -2.84 -0.02 1.67 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 1.25 6.64 -51.93 -0.34 0.90 16 29 H 0.06 0.84 6.59 -51.93 -0.34 0.50 16 30 H 0.07 0.85 6.55 -51.92 -0.34 0.51 16 31 H 0.07 1.14 7.69 -51.93 -0.40 0.74 16 32 H 0.08 1.11 6.15 -51.93 -0.32 0.79 16 33 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 34 H 0.07 0.78 6.40 -51.92 -0.33 0.45 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.05 0.56 8.14 -51.92 -0.42 0.13 16 40 H 0.06 0.64 6.44 -51.93 -0.33 0.31 16 41 H 0.07 1.56 8.14 -51.93 -0.42 1.13 16 42 H 0.08 1.69 8.09 -51.93 -0.42 1.27 16 43 H 0.39 10.02 6.60 45.56 0.30 10.32 16 44 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 45 H 0.08 1.62 8.09 -51.93 -0.42 1.20 16 46 H 0.07 1.43 7.69 -51.93 -0.40 1.04 16 LS Contribution 360.15 15.07 5.43 5.43 Total: -1.00 -27.14 360.15 -7.84 -34.99 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -7.45 Total: 12.67 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -0.39 Total: -3.76 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: -0.02 Total: -35.81 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.38 Total: -27.80 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.02 Total: 14.29 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -27.14 -7.84 -34.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450757852.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.901 kcal (2) G-P(sol) polarization free energy of solvation -27.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds