Wall clock time and date at job start Tue Mar 31 2020 05:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47296 * 2 1 4 4 C 1.52998 * 109.47366 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47366 * 179.97438 * 4 3 2 6 6 O 1.42903 * 109.47269 * 179.97438 * 5 4 3 7 7 C 1.42893 * 114.00063 * 180.02562 * 6 5 4 8 8 C 1.50704 * 109.47193 * 180.02562 * 7 6 5 9 9 O 1.21277 * 119.99524 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99814 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99705 * 180.02562 * 10 8 7 12 12 H 1.08999 * 110.01438 * 326.38860 * 11 10 8 13 13 C 1.53876 * 110.03395 * 87.82962 * 11 10 8 14 14 C 1.54269 * 106.59515 * 119.28568 * 13 11 10 15 15 C 1.54885 * 104.19728 * 23.60996 * 14 13 11 16 16 H 1.09000 * 110.91201 * 80.44609 * 15 14 13 17 17 C 1.50702 * 110.75464 * 203.74365 * 15 14 13 18 18 H 1.08002 * 120.00299 * 113.33405 * 17 15 14 19 19 C 1.37884 * 119.99942 * 293.04963 * 17 15 14 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 15 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 15 22 22 H 1.48501 * 109.47188 * 90.00793 * 21 19 17 23 23 H 1.48501 * 109.47085 * 210.00372 * 21 19 17 24 24 H 1.48498 * 109.47634 * 330.00608 * 21 19 17 25 25 C 1.54269 * 110.03132 * 204.99959 * 11 10 8 26 26 H 1.08999 * 109.46993 * 59.99599 * 1 2 3 27 27 H 1.08999 * 109.47000 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46761 * 299.99816 * 1 2 3 29 29 H 1.09004 * 109.46893 * 240.00021 * 2 1 3 30 30 H 1.08999 * 109.46993 * 120.00401 * 2 1 3 31 31 H 1.08991 * 109.47129 * 59.99860 * 3 2 1 32 32 H 1.09005 * 109.46809 * 300.00434 * 3 2 1 33 33 H 1.09004 * 109.47119 * 59.99840 * 4 3 2 34 34 H 1.09008 * 109.46839 * 300.00129 * 4 3 2 35 35 H 1.09004 * 109.47132 * 59.99848 * 5 4 3 36 36 H 1.08996 * 109.46989 * 300.00052 * 5 4 3 37 37 H 1.09000 * 109.47451 * 60.00032 * 7 6 5 38 38 H 1.08998 * 109.47083 * 299.99863 * 7 6 5 39 39 H 0.96994 * 120.00392 * 359.97438 * 10 8 7 40 40 H 1.08998 * 110.03645 * 238.56821 * 13 11 10 41 41 H 1.09002 * 110.03268 * 0.02562 * 13 11 10 42 42 H 1.09003 * 110.48357 * 264.93244 * 14 13 11 43 43 H 1.08997 * 110.48553 * 142.29534 * 14 13 11 44 44 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 45 45 H 1.08996 * 110.48447 * 98.42773 * 25 11 10 46 46 H 1.08993 * 110.59828 * 335.83570 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0801 2.8849 -0.0013 6 8 5.5091 2.8849 -0.0013 7 6 6.0903 4.1903 -0.0013 8 6 7.5927 4.0713 -0.0019 9 8 8.1141 2.9764 -0.0019 10 7 8.3566 5.1817 -0.0015 11 6 9.8170 5.0659 -0.0027 12 1 10.1219 4.1857 0.5632 13 6 10.3371 4.9710 -1.4478 14 6 11.2660 6.1839 -1.6623 15 6 11.7251 6.5681 -0.2338 16 1 12.5348 5.9203 0.1020 17 6 12.1432 8.0149 -0.1784 18 1 11.5668 8.7219 0.3998 19 6 13.2652 8.4349 -0.8610 20 7 13.9671 7.5740 -1.5651 21 14 13.7878 10.2267 -0.7860 22 1 14.7140 10.4247 0.3577 23 1 14.4758 10.5949 -2.0495 24 1 12.5893 11.0849 -0.6067 25 6 10.4480 6.3331 0.6105 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6768 1.9563 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 3.9330 0.9287 -0.8909 34 1 3.9337 0.9284 0.8892 35 1 3.7171 3.3991 0.8887 36 1 3.7164 3.3985 -0.8912 37 1 5.7688 4.7313 0.8887 38 1 5.7687 4.7312 -0.8913 39 1 7.9395 6.0573 -0.0012 40 1 10.8952 4.0447 -1.5837 41 1 9.5029 5.0115 -2.1483 42 1 10.7186 7.0071 -2.1215 43 1 12.1223 5.9046 -2.2761 44 1 14.7562 7.8696 -2.0457 45 1 10.7074 6.1628 1.6553 46 1 9.7696 7.1814 0.5202 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452564087.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:55 Heat of formation + Delta-G solvation = -122.586249 kcal Electronic energy + Delta-G solvation = -21675.732804 eV Core-core repulsion = 18370.864288 eV Total energy + Delta-G solvation = -3304.868516 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.71966 -38.13455 -36.91699 -35.92057 -33.65268 -32.08404 -31.71426 -28.73307 -28.10692 -26.69427 -25.64275 -23.77071 -22.23733 -21.41566 -20.64752 -19.66239 -19.06715 -17.10981 -16.82296 -16.77119 -16.32134 -15.79605 -15.31537 -14.79192 -14.55854 -14.32412 -14.15091 -13.99349 -13.39894 -13.35608 -12.70371 -12.58346 -12.35735 -12.33510 -11.80772 -11.66539 -11.43956 -11.39895 -11.13053 -11.06721 -11.00817 -10.92160 -10.89588 -10.59392 -10.28773 -9.97301 -9.87451 -9.57085 -9.50400 -9.21013 -8.83379 -8.61423 -8.37831 -6.02018 -4.05300 2.80990 2.90128 3.29392 3.36594 3.38590 3.90843 4.42686 4.52253 4.56764 4.70719 4.80766 4.81002 4.98719 5.04576 5.07045 5.11241 5.20035 5.30024 5.36341 5.39660 5.49875 5.56005 5.64169 5.66822 5.69245 5.81523 5.81775 5.94748 6.00387 6.30859 6.33641 6.58124 6.65505 6.73477 6.85292 6.90319 6.94153 7.25239 7.31176 7.68604 7.78756 7.85932 8.01077 8.41370 8.47479 8.97250 9.58835 11.07629 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.057723 B = 0.002132 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.962778 B =13131.695903 C =13323.232957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.117 4.117 4 C -0.120 4.120 5 C 0.060 3.940 6 O -0.363 6.363 7 C 0.044 3.956 8 C 0.508 3.492 9 O -0.525 6.525 10 N -0.717 5.717 11 C 0.139 3.861 12 H 0.081 0.919 13 C -0.135 4.135 14 C -0.102 4.102 15 C 0.051 3.949 16 H 0.036 0.964 17 C -0.515 4.515 18 H 0.055 0.945 19 C 0.063 3.937 20 N -0.888 5.888 21 Si 0.890 3.110 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.275 1.275 25 C -0.121 4.121 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.398 0.602 40 H 0.056 0.944 41 H 0.049 0.951 42 H 0.047 0.953 43 H 0.066 0.934 44 H 0.260 0.740 45 H 0.053 0.947 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.574 -8.483 2.541 25.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.155 4.155 4 C -0.157 4.157 5 C -0.017 4.017 6 O -0.281 6.281 7 C -0.036 4.036 8 C 0.293 3.707 9 O -0.401 6.401 10 N -0.370 5.370 11 C 0.036 3.964 12 H 0.099 0.901 13 C -0.173 4.173 14 C -0.140 4.140 15 C 0.032 3.968 16 H 0.054 0.946 17 C -0.553 4.553 18 H 0.073 0.927 19 C -0.139 4.139 20 N -0.526 5.526 21 Si 0.718 3.282 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.200 1.200 25 C -0.159 4.159 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.232 0.768 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.084 0.916 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -22.922 -9.485 2.426 24.925 hybrid contribution -0.043 1.737 -0.083 1.740 sum -22.965 -7.748 2.342 24.349 Atomic orbital electron populations 1.21779 0.95845 1.01641 1.01781 1.21519 0.95796 0.96608 1.02350 1.21533 0.94402 0.97289 1.02227 1.21526 0.94951 0.95473 1.03762 1.22586 0.80840 0.98144 1.00135 1.88014 1.19239 1.25480 1.95408 1.22234 0.92343 0.86672 1.02343 1.20191 0.88322 0.85088 0.77136 1.90713 1.74582 1.26542 1.48243 1.46245 1.07806 1.08058 1.74869 1.21886 0.76806 1.00159 0.97542 0.90096 1.22646 0.99305 1.00469 0.94919 1.22337 0.97014 0.93797 1.00898 1.19563 0.90671 0.96562 0.89984 0.94592 1.21093 1.10348 0.93690 1.30170 0.92654 1.24987 0.96338 0.97282 0.95316 1.69962 1.17351 1.33897 1.31405 0.86637 0.78704 0.85487 0.77384 1.20732 1.21306 1.19999 1.22762 0.99763 0.94184 0.99198 0.92761 0.92752 0.92765 0.91836 0.91847 0.91823 0.91814 0.90919 0.90934 0.93280 0.93249 0.90500 0.90466 0.76841 0.92489 0.93188 0.93456 0.91566 0.93033 0.92786 0.92085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.91 37.16 0.37 -0.44 16 2 C -0.13 -0.76 5.93 -26.73 -0.16 -0.92 16 3 C -0.12 -0.74 5.21 -26.73 -0.14 -0.88 16 4 C -0.12 -1.00 5.58 -26.73 -0.15 -1.15 16 5 C 0.06 0.55 5.94 37.16 0.22 0.77 16 6 O -0.36 -4.85 9.88 -55.14 -0.54 -5.39 16 7 C 0.04 0.51 6.42 36.01 0.23 0.74 16 8 C 0.51 8.01 7.90 -10.98 -0.09 7.92 16 9 O -0.53 -10.76 16.15 -14.35 -0.23 -10.99 16 10 N -0.72 -10.68 4.98 -52.72 -0.26 -10.95 16 11 C 0.14 2.54 3.25 -66.81 -0.22 2.32 16 12 H 0.08 1.58 7.56 -51.93 -0.39 1.19 16 13 C -0.13 -2.64 6.59 -25.61 -0.17 -2.81 16 14 C -0.10 -2.33 5.76 -25.07 -0.14 -2.47 16 15 C 0.05 1.23 2.73 -89.78 -0.24 0.99 16 16 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 17 C -0.51 -13.71 8.49 -34.44 -0.29 -14.00 16 18 H 0.06 1.44 7.77 -52.49 -0.41 1.03 16 19 C 0.06 1.71 5.37 -17.82 -0.10 1.61 16 20 N -0.89 -25.27 12.43 55.43 0.69 -24.58 16 21 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 C -0.12 -2.36 5.94 -25.07 -0.15 -2.51 16 26 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 35 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.40 4.73 8.36 -40.82 -0.34 4.39 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.05 0.92 7.92 -51.93 -0.41 0.51 16 42 H 0.05 1.09 8.04 -51.93 -0.42 0.67 16 43 H 0.07 1.66 7.64 -51.93 -0.40 1.26 16 44 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 45 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 46 H 0.06 1.12 7.63 -51.93 -0.40 0.73 16 LS Contribution 372.83 15.07 5.62 5.62 Total: -1.00 -31.60 372.83 -9.44 -41.04 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -8.66 Total: 0.19 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -1.03 Total: -10.83 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.43 Total: -35.53 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: -0.78 Total: -16.38 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.60 -9.44 -41.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452564087.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.543 kcal (2) G-P(sol) polarization free energy of solvation -31.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds