Wall clock time and date at job start Tue Mar 31 2020 06:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47175 * 2 1 4 4 H 1.08999 * 109.47120 * 54.99731 * 3 2 1 5 5 C 1.52994 * 109.46937 * 294.99717 * 3 2 1 6 6 C 1.53001 * 109.47301 * 180.02562 * 5 3 2 7 7 C 1.52995 * 109.46984 * 59.99824 * 6 5 3 8 8 C 1.52997 * 109.47525 * 300.00448 * 7 6 5 9 9 C 1.53001 * 109.47355 * 59.99779 * 8 7 6 10 10 H 1.08992 * 109.46874 * 59.99924 * 9 8 7 11 11 C 1.50692 * 109.47345 * 180.02562 * 9 8 7 12 12 O 1.21298 * 120.00231 * 100.39680 * 11 9 8 13 13 N 1.34774 * 120.00220 * 280.39531 * 11 9 8 14 14 C 1.37098 * 119.99744 * 355.89879 * 13 11 9 15 15 H 1.08002 * 120.00601 * 42.80298 * 14 13 11 16 16 C 1.38952 * 119.99959 * 222.80523 * 14 13 11 17 17 N 1.31409 * 120.00344 * 206.61575 * 16 14 13 18 18 Si 1.86801 * 119.99825 * 26.60948 * 16 14 13 19 19 H 1.48504 * 109.46838 * 95.07683 * 18 16 14 20 20 H 1.48502 * 109.47242 * 215.07265 * 18 16 14 21 21 H 1.48499 * 109.47257 * 335.07694 * 18 16 14 22 22 C 1.46499 * 120.00369 * 175.89198 * 13 11 9 23 23 C 1.52996 * 109.47332 * 276.91310 * 22 13 11 24 24 O 1.42898 * 109.47166 * 68.07321 * 23 22 13 25 25 C 1.42908 * 113.99954 * 179.97438 * 24 23 22 26 26 H 1.09002 * 109.47064 * 300.00560 * 1 2 3 27 27 H 1.08999 * 109.46768 * 60.00165 * 1 2 3 28 28 H 1.08991 * 109.47194 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46733 * 239.99643 * 2 1 3 30 30 H 1.08999 * 109.46768 * 119.99835 * 2 1 3 31 31 H 1.08992 * 109.47526 * 300.00144 * 5 3 2 32 32 H 1.09003 * 109.47369 * 60.00457 * 5 3 2 33 33 H 1.09002 * 109.47316 * 180.02562 * 6 5 3 34 34 H 1.09001 * 109.47376 * 300.00166 * 6 5 3 35 35 H 1.08999 * 109.47111 * 60.00407 * 7 6 5 36 36 H 1.09001 * 109.47218 * 180.02562 * 7 6 5 37 37 H 1.09006 * 109.47284 * 299.99998 * 8 7 6 38 38 H 1.08995 * 109.47639 * 179.97438 * 8 7 6 39 39 H 0.97000 * 120.00636 * 180.02562 * 17 16 14 40 40 H 1.08994 * 109.47088 * 156.91127 * 22 13 11 41 41 H 1.09005 * 109.46943 * 36.91385 * 22 13 11 42 42 H 1.09003 * 109.47473 * 308.07638 * 23 22 13 43 43 H 1.09006 * 109.47456 * 188.07685 * 23 22 13 44 44 H 1.09005 * 109.47025 * 180.02562 * 25 24 23 45 45 H 1.08991 * 109.47014 * 300.00019 * 25 24 23 46 46 H 1.08996 * 109.46840 * 60.00322 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6354 2.1265 -1.3073 6 6 2.1459 3.5688 -1.3077 7 6 3.6707 3.5700 -1.1822 8 6 4.0755 2.8860 0.1251 9 6 3.5649 1.4437 0.1255 10 1 3.9992 0.9045 -0.7163 11 6 3.9631 0.7702 1.4134 12 8 3.1557 0.6521 2.3109 13 7 5.2163 0.2990 1.5681 14 6 6.1038 0.3565 0.5248 15 1 6.1649 1.2465 -0.0839 16 6 6.9249 -0.7304 0.2504 17 7 8.0819 -0.5463 -0.3447 18 14 6.3839 -2.4535 0.7276 19 1 5.7306 -3.1070 -0.4350 20 1 7.5687 -3.2478 1.1405 21 1 5.4222 -2.3756 1.8564 22 6 5.6301 -0.2746 2.8510 23 6 6.0481 0.8495 3.8011 24 8 4.9009 1.6237 4.1569 25 6 5.1831 2.7055 5.0471 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.0699 1.5875 -2.1491 32 1 0.5490 2.1252 -1.3970 33 1 1.8572 4.0562 -2.2389 34 1 1.7117 4.1082 -0.4659 35 1 4.1050 3.0307 -2.0240 36 1 4.0344 4.5976 -1.1820 37 1 3.6412 3.4253 0.9670 38 1 5.1618 2.8865 0.2143 39 1 8.6549 -1.3050 -0.5366 40 1 6.4719 -0.9486 2.6930 41 1 4.7982 -0.8281 3.2868 42 1 6.7794 1.4895 3.3074 43 1 6.4897 0.4198 4.7003 44 1 4.2613 3.2434 5.2689 45 1 5.6064 2.3139 5.9720 46 1 5.8966 3.3840 4.5795 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457201700.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:28 Heat of formation + Delta-G solvation = -101.817312 kcal Electronic energy + Delta-G solvation = -24814.818849 eV Core-core repulsion = 21510.850941 eV Total energy + Delta-G solvation = -3303.967907 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.59600 -37.70098 -36.64802 -34.73202 -33.38367 -31.95891 -30.83395 -28.99550 -28.51026 -25.84544 -24.75468 -23.52881 -23.06472 -21.71823 -20.16599 -19.46686 -18.64843 -17.01477 -16.11880 -15.72250 -15.49811 -14.83322 -14.50253 -14.48714 -14.35298 -13.85861 -13.64860 -13.50129 -13.07078 -12.82904 -12.60800 -12.35812 -12.05349 -12.04374 -11.79837 -11.48170 -11.13207 -11.08154 -11.05324 -11.00234 -10.67714 -10.60657 -10.41434 -10.31302 -10.27617 -9.87983 -9.84673 -9.68626 -9.39951 -9.10654 -9.01363 -8.22632 -7.55591 -6.48106 -4.04078 3.11685 3.24605 3.32957 3.94357 4.17295 4.42187 4.50710 4.96417 5.12177 5.18210 5.30250 5.51676 5.60250 5.62131 5.68253 5.71629 5.80180 5.87093 5.92404 5.96882 5.99555 6.02070 6.03426 6.07902 6.09960 6.13040 6.14160 6.31008 6.35200 6.42055 6.47788 6.54720 6.59296 6.61008 6.68843 6.76471 6.79063 6.85353 7.02007 7.13300 7.46784 7.79196 8.20908 8.36120 9.06503 9.50821 9.90370 10.63116 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.012481 B = 0.007775 C = 0.006598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.832100 B = 3600.496094 C = 4242.622130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.123 4.123 3 C -0.064 4.064 4 H 0.072 0.928 5 C -0.114 4.114 6 C -0.117 4.117 7 C -0.116 4.116 8 C -0.102 4.102 9 C -0.085 4.085 10 H 0.093 0.907 11 C 0.498 3.502 12 O -0.573 6.573 13 N -0.471 5.471 14 C -0.345 4.345 15 H 0.102 0.898 16 C 0.071 3.929 17 N -0.856 5.856 18 Si 0.853 3.147 19 H -0.277 1.277 20 H -0.284 1.284 21 H -0.253 1.253 22 C 0.120 3.880 23 C 0.048 3.952 24 O -0.363 6.363 25 C 0.032 3.968 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.045 0.955 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.273 0.727 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.054 0.946 43 H 0.040 0.960 44 H 0.077 0.923 45 H 0.030 0.970 46 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.033 4.752 1.235 8.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.161 4.161 3 C -0.083 4.083 4 H 0.091 0.909 5 C -0.152 4.152 6 C -0.155 4.155 7 C -0.153 4.153 8 C -0.140 4.140 9 C -0.106 4.106 10 H 0.111 0.889 11 C 0.287 3.713 12 O -0.456 6.456 13 N -0.193 5.193 14 C -0.472 4.472 15 H 0.119 0.881 16 C -0.136 4.136 17 N -0.491 5.491 18 Si 0.678 3.322 19 H -0.203 1.203 20 H -0.210 1.210 21 H -0.177 1.177 22 C -0.004 4.004 23 C -0.030 4.030 24 O -0.281 6.281 25 C -0.065 4.065 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.058 0.942 44 H 0.095 0.905 45 H 0.049 0.951 46 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -7.415 4.563 1.542 8.842 hybrid contribution 0.503 -0.911 0.199 1.060 sum -6.912 3.651 1.742 8.009 Atomic orbital electron populations 1.21762 0.96761 1.00643 1.01140 1.21615 0.94995 0.97020 1.02455 1.20925 0.94426 0.95840 0.97090 0.90915 1.21643 0.99910 0.95543 0.98063 1.21532 0.96237 0.96919 1.00812 1.21520 0.95425 0.99927 0.98470 1.21368 1.01580 0.94173 0.96848 1.21052 0.95061 0.96501 0.97987 0.88895 1.20373 0.81375 0.80991 0.88545 1.90539 1.50726 1.60572 1.43725 1.43602 1.09895 1.56418 1.09367 1.19025 1.16289 1.01914 1.09933 0.88093 1.25401 0.94358 0.98457 0.95387 1.69854 1.07127 1.32021 1.40075 0.87309 0.79476 0.85310 0.80139 1.20343 1.20967 1.17693 1.21610 0.99672 0.93820 0.85307 1.23043 0.88670 0.94414 0.96841 1.88178 1.31824 1.42983 1.65108 1.22633 1.00960 0.90288 0.92615 0.93001 0.93219 0.93622 0.92886 0.90587 0.92192 0.92299 0.92770 0.92399 0.91860 0.92598 0.92605 0.90884 0.91697 0.90430 0.91193 0.92771 0.94218 0.90471 0.95145 0.94835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.67 37.16 0.36 -1.73 16 2 C -0.12 -2.14 5.17 -26.73 -0.14 -2.28 16 3 C -0.06 -1.11 1.34 -90.62 -0.12 -1.23 16 4 H 0.07 1.36 7.90 -51.93 -0.41 0.95 16 5 C -0.11 -1.63 4.96 -26.73 -0.13 -1.76 16 6 C -0.12 -1.58 5.92 -26.73 -0.16 -1.73 16 7 C -0.12 -1.72 5.92 -26.74 -0.16 -1.88 16 8 C -0.10 -1.83 5.03 -26.73 -0.13 -1.97 16 9 C -0.08 -1.67 1.27 -91.77 -0.12 -1.79 16 10 H 0.09 1.94 7.29 -51.93 -0.38 1.57 16 11 C 0.50 11.45 5.63 -10.99 -0.06 11.39 16 12 O -0.57 -14.21 13.13 -10.67 -0.14 -14.35 16 13 N -0.47 -11.17 2.06 -114.82 -0.24 -11.40 16 14 C -0.34 -8.68 8.34 -14.93 -0.12 -8.81 16 15 H 0.10 2.66 6.09 -52.49 -0.32 2.34 16 16 C 0.07 1.84 5.11 -17.47 -0.09 1.75 16 17 N -0.86 -23.04 13.96 55.50 0.77 -22.27 16 18 Si 0.85 19.73 26.35 -169.99 -4.48 15.25 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.25 -5.79 5.53 56.52 0.31 -5.47 16 22 C 0.12 2.66 3.90 -4.04 -0.02 2.65 16 23 C 0.05 0.96 6.27 37.16 0.23 1.19 16 24 O -0.36 -7.47 9.00 -51.45 -0.46 -7.94 16 25 C 0.03 0.50 11.01 101.05 1.11 1.62 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.63 6.56 -51.93 -0.34 0.29 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.08 1.55 6.15 -51.93 -0.32 1.23 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.76 6.57 -51.93 -0.34 0.42 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.07 1.44 6.55 -51.93 -0.34 1.10 16 39 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 40 H 0.08 1.70 4.87 -51.93 -0.25 1.45 16 41 H 0.07 1.61 7.45 -51.93 -0.39 1.22 16 42 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 45 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 345.50 15.07 5.21 5.21 Total: -1.00 -28.41 345.50 -7.11 -35.52 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -8.23 Total: 4.55 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: 0.45 Total: -4.59 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: 0.54 Total: -33.67 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.60 Total: -22.28 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -4.48 Total: 15.25 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.41 -7.11 -35.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457201700.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.293 kcal (2) G-P(sol) polarization free energy of solvation -28.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds