Wall clock time and date at job start Tue Mar 31 2020 06:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47334 * 2 1 4 4 H 1.09000 * 109.46678 * 55.00235 * 3 2 1 5 5 C 1.52992 * 109.47101 * 295.00145 * 3 2 1 6 6 C 1.53003 * 109.47210 * 179.97438 * 5 3 2 7 7 C 1.53005 * 109.46757 * 60.00173 * 6 5 3 8 8 C 1.53000 * 109.47015 * 300.00098 * 7 6 5 9 9 C 1.52995 * 109.47153 * 175.00084 * 3 2 1 10 10 H 1.09008 * 109.46971 * 300.00329 * 9 3 2 11 11 C 1.50701 * 109.47084 * 60.00287 * 9 3 2 12 12 O 1.21284 * 120.00246 * 9.10906 * 11 9 3 13 13 N 1.34783 * 119.99893 * 189.11289 * 11 9 3 14 14 C 1.37103 * 119.99953 * 354.97710 * 13 11 9 15 15 H 1.08004 * 119.99789 * 39.11103 * 14 13 11 16 16 C 1.38940 * 120.00026 * 219.10535 * 14 13 11 17 17 N 1.31413 * 119.99787 * 19.25048 * 16 14 13 18 18 Si 1.86801 * 120.00336 * 198.97308 * 16 14 13 19 19 H 1.48500 * 109.47084 * 270.27769 * 18 16 14 20 20 H 1.48499 * 109.46782 * 30.27379 * 18 16 14 21 21 H 1.48492 * 109.47143 * 150.27776 * 18 16 14 22 22 C 1.46494 * 119.99884 * 174.97623 * 13 11 9 23 23 C 1.52999 * 109.47562 * 270.00043 * 22 13 11 24 24 O 1.42901 * 109.46995 * 64.99545 * 23 22 13 25 25 C 1.42904 * 113.99896 * 179.97438 * 24 23 22 26 26 H 1.08999 * 109.47004 * 59.99736 * 1 2 3 27 27 H 1.08994 * 109.47210 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46953 * 300.00246 * 1 2 3 29 29 H 1.09001 * 109.46975 * 240.00311 * 2 1 3 30 30 H 1.08999 * 109.47004 * 120.00264 * 2 1 3 31 31 H 1.08995 * 109.47641 * 300.00039 * 5 3 2 32 32 H 1.09008 * 109.47340 * 60.00320 * 5 3 2 33 33 H 1.08994 * 109.47624 * 180.02562 * 6 5 3 34 34 H 1.09000 * 109.46925 * 300.00307 * 6 5 3 35 35 H 1.08995 * 109.46846 * 59.99795 * 7 6 5 36 36 H 1.09000 * 109.47033 * 180.02562 * 7 6 5 37 37 H 1.09008 * 109.47469 * 300.00006 * 8 7 6 38 38 H 1.09000 * 109.47141 * 180.02562 * 8 7 6 39 39 H 0.97000 * 120.00099 * 174.69751 * 17 16 14 40 40 H 1.08995 * 109.47233 * 30.00018 * 22 13 11 41 41 H 1.09000 * 109.47002 * 150.00379 * 22 13 11 42 42 H 1.08999 * 109.47747 * 185.00140 * 23 22 13 43 43 H 1.09001 * 109.47099 * 305.00369 * 23 22 13 44 44 H 1.08988 * 109.47328 * 300.00480 * 25 24 23 45 45 H 1.09007 * 109.46892 * 60.00840 * 25 24 23 46 46 H 1.09004 * 109.46815 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6353 2.1266 -1.3073 6 6 2.1448 3.5693 -1.3070 7 6 3.6697 3.5715 -1.1811 8 6 4.0744 2.8874 0.1262 9 6 3.5648 1.4443 0.1257 10 1 3.8532 0.9569 1.0571 11 6 4.1657 0.6991 -1.0382 12 8 3.4644 0.3581 -1.9672 13 7 5.4824 0.4114 -1.0468 14 6 6.2941 0.8850 -0.0485 15 1 5.9388 0.9079 0.9711 16 6 7.5738 1.3353 -0.3485 17 7 7.8812 1.6668 -1.5825 18 14 8.8551 1.4771 1.0034 19 1 8.7843 2.8295 1.6126 20 1 8.5920 0.4510 2.0441 21 1 10.2073 1.2634 0.4282 22 6 6.0463 -0.4073 -2.1229 23 6 5.9874 -1.8835 -1.7250 24 8 4.6228 -2.2928 -1.6139 25 6 4.4552 -3.6632 -1.2451 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.0698 1.5876 -2.1491 32 1 0.5489 2.1254 -1.3968 33 1 1.8561 4.0568 -2.2381 34 1 1.7099 4.1080 -0.4652 35 1 4.1045 3.0327 -2.0229 36 1 4.0326 4.5993 -1.1804 37 1 3.6395 3.4262 0.9682 38 1 5.1607 2.8894 0.2162 39 1 8.7489 2.0534 -1.7790 40 1 5.4709 -0.2539 -3.0358 41 1 7.0832 -0.1182 -2.2940 42 1 6.4864 -2.4848 -2.4849 43 1 6.4873 -2.0216 -0.7663 44 1 4.9223 -4.3011 -1.9953 45 1 4.9235 -3.8386 -0.2765 46 1 3.3920 -3.8952 -1.1824 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457201701.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:32 Heat of formation + Delta-G solvation = -99.074963 kcal Electronic energy + Delta-G solvation = -25169.816085 eV Core-core repulsion = 21865.967095 eV Total energy + Delta-G solvation = -3303.848990 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.68910 -37.41319 -36.22506 -34.57580 -33.21734 -31.53144 -30.65406 -28.67270 -28.30210 -25.75227 -24.83480 -23.32668 -22.77736 -21.26785 -20.03494 -19.65608 -18.63154 -16.49379 -15.88445 -15.45462 -15.32783 -14.74878 -14.59201 -14.29630 -14.04654 -13.93819 -13.50421 -13.11283 -12.83588 -12.59877 -12.52631 -12.06331 -11.79931 -11.68499 -11.33786 -11.22758 -11.13479 -11.08482 -10.97094 -10.80090 -10.65150 -10.45916 -10.34723 -10.20705 -10.13227 -9.94021 -9.82278 -9.24645 -9.21049 -8.97445 -8.93091 -7.87099 -7.30824 -6.32766 -4.00303 3.10575 3.20799 3.23734 4.05275 4.20214 4.55726 4.85388 5.03783 5.35607 5.47958 5.54833 5.67693 5.73050 5.73714 5.79346 5.87354 5.98638 6.03132 6.04850 6.12211 6.17119 6.22183 6.29181 6.31429 6.33115 6.37483 6.42115 6.45415 6.59633 6.68866 6.69340 6.84793 6.93241 6.97307 7.03338 7.09711 7.17192 7.24337 7.30363 7.44120 7.52858 7.89916 8.11045 8.46809 9.16545 9.68384 10.14977 10.69845 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.013609 B = 0.008348 C = 0.006062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.036768 B = 3353.337183 C = 4617.489792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.126 4.126 3 C -0.059 4.059 4 H 0.053 0.947 5 C -0.131 4.131 6 C -0.114 4.114 7 C -0.113 4.113 8 C -0.108 4.108 9 C -0.083 4.083 10 H 0.074 0.926 11 C 0.500 3.500 12 O -0.579 6.579 13 N -0.444 5.444 14 C -0.328 4.328 15 H 0.085 0.915 16 C 0.042 3.958 17 N -0.865 5.865 18 Si 0.906 3.094 19 H -0.277 1.277 20 H -0.270 1.270 21 H -0.283 1.283 22 C 0.118 3.882 23 C 0.049 3.951 24 O -0.368 6.368 25 C 0.033 3.967 26 H 0.053 0.947 27 H 0.043 0.957 28 H 0.042 0.958 29 H 0.092 0.908 30 H 0.045 0.955 31 H 0.108 0.892 32 H 0.043 0.957 33 H 0.048 0.952 34 H 0.046 0.954 35 H 0.066 0.934 36 H 0.048 0.952 37 H 0.047 0.953 38 H 0.093 0.907 39 H 0.269 0.731 40 H 0.063 0.937 41 H 0.115 0.885 42 H 0.036 0.964 43 H 0.046 0.954 44 H 0.029 0.971 45 H 0.031 0.969 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.624 -2.231 2.765 6.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.164 4.164 3 C -0.078 4.078 4 H 0.071 0.929 5 C -0.167 4.167 6 C -0.152 4.152 7 C -0.151 4.151 8 C -0.145 4.145 9 C -0.105 4.105 10 H 0.092 0.908 11 C 0.289 3.711 12 O -0.464 6.464 13 N -0.163 5.163 14 C -0.456 4.456 15 H 0.102 0.898 16 C -0.163 4.163 17 N -0.503 5.503 18 Si 0.733 3.267 19 H -0.203 1.203 20 H -0.195 1.195 21 H -0.209 1.209 22 C -0.006 4.006 23 C -0.029 4.029 24 O -0.286 6.286 25 C -0.065 4.065 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.111 0.889 30 H 0.064 0.936 31 H 0.126 0.874 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.112 0.888 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.132 0.868 42 H 0.054 0.946 43 H 0.064 0.936 44 H 0.048 0.952 45 H 0.050 0.950 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.901 -2.266 2.144 6.675 hybrid contribution 1.125 -0.112 0.976 1.493 sum -4.777 -2.378 3.120 6.182 Atomic orbital electron populations 1.21780 0.97250 1.00384 1.00927 1.21708 0.94371 0.97151 1.03132 1.20866 0.94030 0.95601 0.97319 0.92882 1.21988 0.98850 0.95317 1.00583 1.21517 0.96436 0.97372 0.99853 1.21445 0.95039 0.99475 0.99109 1.21491 1.03395 0.93285 0.96364 1.21028 0.94401 0.96772 0.98259 0.90811 1.20108 0.83015 0.80357 0.87599 1.90349 1.60731 1.57086 1.38205 1.43233 1.05738 1.44065 1.23311 1.19304 0.95526 1.41808 0.88953 0.89767 1.25328 0.98906 0.95562 0.96484 1.69809 1.22923 1.38654 1.18895 0.86253 0.80337 0.78868 0.81227 1.20264 1.19514 1.20861 1.21409 1.02419 0.85631 0.91165 1.23139 0.82674 0.97894 0.99163 1.88135 1.26007 1.24579 1.89920 1.22611 1.01348 0.84669 0.97844 0.92798 0.93775 0.93899 0.88941 0.93609 0.87427 0.93879 0.93335 0.93538 0.91482 0.93335 0.93472 0.88828 0.92087 0.91898 0.86753 0.94588 0.93613 0.95229 0.95044 0.90633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.67 37.16 0.36 -1.79 16 2 C -0.13 -2.24 5.03 -26.73 -0.13 -2.37 16 3 C -0.06 -1.07 1.93 -90.62 -0.18 -1.25 16 4 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 5 C -0.13 -2.36 4.69 -26.73 -0.13 -2.49 16 6 C -0.11 -1.95 5.92 -26.73 -0.16 -2.11 16 7 C -0.11 -2.17 5.70 -26.73 -0.15 -2.32 16 8 C -0.11 -2.10 5.27 -26.71 -0.14 -2.24 16 9 C -0.08 -1.69 1.77 -91.75 -0.16 -1.85 16 10 H 0.07 1.50 7.35 -51.92 -0.38 1.12 16 11 C 0.50 11.63 4.70 -10.98 -0.05 11.58 16 12 O -0.58 -14.30 10.49 4.43 0.05 -14.26 16 13 N -0.44 -10.74 2.49 -114.82 -0.29 -11.03 16 14 C -0.33 -7.94 6.63 -14.93 -0.10 -8.03 16 15 H 0.08 2.01 6.85 -52.48 -0.36 1.65 16 16 C 0.04 1.02 5.00 -17.47 -0.09 0.93 16 17 N -0.87 -21.97 11.43 55.50 0.63 -21.33 16 18 Si 0.91 18.93 29.60 -169.99 -5.03 13.90 16 19 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 20 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 21 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 22 C 0.12 2.76 5.47 -4.05 -0.02 2.74 16 23 C 0.05 1.00 6.28 37.16 0.23 1.24 16 24 O -0.37 -7.71 9.71 -36.36 -0.35 -8.06 16 25 C 0.03 0.52 11.01 101.05 1.11 1.63 16 26 H 0.05 0.79 6.56 -51.93 -0.34 0.45 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.09 1.93 5.98 -51.93 -0.31 1.62 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.11 2.30 5.19 -51.93 -0.27 2.03 16 32 H 0.04 0.71 6.57 -51.92 -0.34 0.37 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 1.51 7.22 -51.93 -0.37 1.13 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 38 H 0.09 2.04 6.03 -51.93 -0.31 1.73 16 39 H 0.27 6.51 8.32 -40.82 -0.34 6.17 16 40 H 0.06 1.56 7.36 -51.93 -0.38 1.17 16 41 H 0.11 2.80 5.55 -51.93 -0.29 2.52 16 42 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.03 0.41 8.14 -51.94 -0.42 -0.01 16 45 H 0.03 0.47 8.14 -51.92 -0.42 0.04 16 46 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 342.95 15.07 5.17 5.17 Total: -1.00 -26.62 342.95 -7.42 -34.04 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -7.99 Total: 7.91 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: 0.40 Total: -6.34 kcal Atomic # 7 Polarization: -32.71 SS G_CDS: 0.35 Total: -32.36 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.31 Total: -22.32 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -26.62 -7.42 -34.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457201701.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.034 kcal (2) G-P(sol) polarization free energy of solvation -26.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds