Wall clock time and date at job start Tue Mar 31 2020 06:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46708 * 2 1 4 4 H 1.08993 * 109.47315 * 305.00115 * 3 2 1 5 5 C 1.53004 * 109.47051 * 65.00196 * 3 2 1 6 6 C 1.52999 * 109.47261 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.47347 * 300.00178 * 6 5 3 8 8 C 1.53004 * 109.47085 * 59.99715 * 7 6 5 9 9 C 1.53000 * 109.47028 * 184.99836 * 3 2 1 10 10 H 1.08998 * 109.47024 * 60.00773 * 9 3 2 11 11 C 1.50700 * 109.47474 * 300.00207 * 9 3 2 12 12 O 1.21290 * 119.99892 * 350.51832 * 11 9 3 13 13 N 1.34777 * 120.00063 * 170.51632 * 11 9 3 14 14 C 1.37094 * 119.99996 * 4.78116 * 13 11 9 15 15 H 1.08003 * 120.00217 * 322.08683 * 14 13 11 16 16 C 1.38953 * 120.00109 * 142.08184 * 14 13 11 17 17 N 1.31404 * 120.00298 * 159.33544 * 16 14 13 18 18 Si 1.86806 * 119.99768 * 339.33183 * 16 14 13 19 19 H 1.48499 * 109.46869 * 95.08491 * 18 16 14 20 20 H 1.48490 * 109.47186 * 215.08444 * 18 16 14 21 21 H 1.48501 * 109.47064 * 335.08811 * 18 16 14 22 22 C 1.46499 * 119.99969 * 184.78150 * 13 11 9 23 23 C 1.53004 * 109.46741 * 89.99946 * 22 13 11 24 24 O 1.42895 * 109.47148 * 65.00303 * 23 22 13 25 25 C 1.42897 * 114.00177 * 179.97438 * 24 23 22 26 26 H 1.09008 * 109.46807 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47200 * 299.99373 * 1 2 3 28 28 H 1.08994 * 109.47596 * 60.00437 * 1 2 3 29 29 H 1.09004 * 109.47200 * 240.00626 * 2 1 3 30 30 H 1.08994 * 109.47596 * 119.99563 * 2 1 3 31 31 H 1.09002 * 109.47247 * 300.00073 * 5 3 2 32 32 H 1.09003 * 109.47158 * 59.99715 * 5 3 2 33 33 H 1.08997 * 109.47531 * 180.02562 * 6 5 3 34 34 H 1.09003 * 109.47038 * 59.99923 * 6 5 3 35 35 H 1.09003 * 109.46844 * 299.99864 * 7 6 5 36 36 H 1.08997 * 109.47461 * 179.97438 * 7 6 5 37 37 H 1.09003 * 109.47001 * 180.02562 * 8 7 6 38 38 H 1.08993 * 109.47127 * 60.00252 * 8 7 6 39 39 H 0.97003 * 120.00323 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.47057 * 209.99869 * 22 13 11 41 41 H 1.09002 * 109.46853 * 330.00278 * 22 13 11 42 42 H 1.09005 * 109.46513 * 184.99715 * 23 22 13 43 43 H 1.08994 * 109.47263 * 304.99496 * 23 22 13 44 44 H 1.09002 * 109.47690 * 179.97438 * 25 24 23 45 45 H 1.09002 * 109.47234 * 300.00012 * 25 24 23 46 46 H 1.09004 * 109.46643 * 60.00018 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8417 5 6 1.6351 2.1266 1.3074 6 6 2.1455 3.5689 1.3077 7 6 3.6703 3.5704 1.1822 8 6 4.0751 2.8864 -0.1252 9 6 3.5647 1.4445 -0.1257 10 1 3.8531 0.9573 -1.0571 11 6 4.1657 0.6992 1.0381 12 8 3.4657 0.3641 1.9702 13 7 5.4810 0.4052 1.0432 14 6 6.2908 0.8681 0.0385 15 1 5.9246 0.9041 -0.9769 16 6 7.5826 1.2910 0.3266 17 7 8.4841 1.3463 -0.6278 18 14 8.0378 1.7811 2.0708 19 1 8.6442 0.6193 2.7691 20 1 9.0136 2.8998 2.0320 21 1 6.8173 2.2138 2.7979 22 6 6.0453 -0.4092 2.1224 23 6 5.9774 -1.8877 1.7344 24 8 6.8192 -2.1225 0.6039 25 6 6.8288 -3.4803 0.1584 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3634 0.5137 0.8901 28 1 -0.3634 0.5137 -0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5137 0.8899 31 1 0.5487 2.1252 1.3970 32 1 2.0697 1.5875 2.1492 33 1 1.8575 4.0561 2.2393 34 1 1.7112 4.1082 0.4659 35 1 4.1046 3.0311 2.0241 36 1 4.0339 4.5979 1.1820 37 1 5.1615 2.8870 -0.2143 38 1 3.6408 3.4256 -0.9669 39 1 9.3861 1.6412 -0.4267 40 1 7.0843 -0.1241 2.2874 41 1 5.4743 -0.2469 3.0366 42 1 6.3147 -2.4988 2.5717 43 1 4.9499 -2.1507 1.4834 44 1 7.4905 -3.5756 -0.7026 45 1 7.1839 -4.1242 0.9630 46 1 5.8189 -3.7766 -0.1254 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457201702.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:37 Heat of formation + Delta-G solvation = -88.730116 kcal Electronic energy + Delta-G solvation = -25098.126051 eV Core-core repulsion = 21794.725647 eV Total energy + Delta-G solvation = -3303.400404 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.98306 -37.61766 -36.44312 -34.74631 -33.35388 -31.89071 -30.86191 -28.92486 -28.44310 -25.83359 -24.81955 -23.47955 -22.96971 -21.69822 -20.19735 -19.88276 -18.51687 -16.75772 -16.13041 -15.75113 -15.48424 -14.95562 -14.71716 -14.48418 -14.15712 -13.96106 -13.46425 -13.26677 -13.05301 -12.73949 -12.72012 -12.41808 -12.13315 -11.85412 -11.68799 -11.44131 -11.29881 -11.24198 -10.96467 -10.87124 -10.82499 -10.67350 -10.34145 -10.23070 -10.09113 -9.94978 -9.78946 -9.38339 -9.31170 -9.04439 -8.94925 -8.15990 -7.67376 -6.34470 -3.90516 3.10558 3.26430 3.32467 3.78263 4.21211 4.35926 4.50240 5.07689 5.21822 5.33087 5.39961 5.59234 5.61673 5.66177 5.68429 5.74411 5.80325 5.85779 5.91228 5.96683 5.98422 6.06863 6.11321 6.14253 6.18246 6.21411 6.24173 6.29145 6.32175 6.45646 6.48154 6.56018 6.56918 6.72439 6.81051 6.90361 6.91665 6.97056 7.18727 7.24745 7.48509 7.82945 8.20879 8.35213 9.08008 9.46605 9.77935 10.76689 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.015578 B = 0.007998 C = 0.006195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.945917 B = 3500.247908 C = 4518.753221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.127 4.127 3 C -0.061 4.061 4 H 0.058 0.942 5 C -0.131 4.131 6 C -0.114 4.114 7 C -0.118 4.118 8 C -0.111 4.111 9 C -0.080 4.080 10 H 0.083 0.917 11 C 0.492 3.508 12 O -0.594 6.594 13 N -0.457 5.457 14 C -0.322 4.322 15 H 0.102 0.898 16 C 0.074 3.926 17 N -0.859 5.859 18 Si 0.868 3.132 19 H -0.277 1.277 20 H -0.291 1.291 21 H -0.262 1.262 22 C 0.099 3.901 23 C 0.056 3.944 24 O -0.355 6.355 25 C 0.032 3.968 26 H 0.044 0.956 27 H 0.054 0.946 28 H 0.045 0.955 29 H 0.049 0.951 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.106 0.894 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.051 0.949 37 H 0.096 0.904 38 H 0.053 0.947 39 H 0.271 0.729 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.040 0.960 43 H 0.046 0.954 44 H 0.080 0.920 45 H 0.029 0.971 46 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.136 -1.814 1.899 8.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.164 4.164 3 C -0.080 4.080 4 H 0.077 0.923 5 C -0.168 4.168 6 C -0.152 4.152 7 C -0.155 4.155 8 C -0.148 4.148 9 C -0.101 4.101 10 H 0.101 0.899 11 C 0.283 3.717 12 O -0.480 6.480 13 N -0.176 5.176 14 C -0.449 4.449 15 H 0.120 0.880 16 C -0.133 4.133 17 N -0.495 5.495 18 Si 0.697 3.303 19 H -0.204 1.204 20 H -0.218 1.218 21 H -0.186 1.186 22 C -0.024 4.024 23 C -0.022 4.022 24 O -0.272 6.272 25 C -0.065 4.065 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.124 0.876 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.115 0.885 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.058 0.942 43 H 0.065 0.935 44 H 0.099 0.901 45 H 0.047 0.953 46 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -8.140 -1.786 2.191 8.617 hybrid contribution 0.466 -0.078 0.773 0.906 sum -7.674 -1.864 2.964 8.435 Atomic orbital electron populations 1.21778 0.96958 1.00533 1.01129 1.21705 0.94728 0.97214 1.02789 1.20903 0.93914 0.95606 0.97590 0.92348 1.21994 0.99041 0.95375 1.00412 1.21508 0.96206 0.97369 1.00084 1.21514 0.95405 0.99677 0.98937 1.21503 1.03787 0.93099 0.96452 1.20978 0.94230 0.96890 0.97961 0.89917 1.20304 0.82479 0.80863 0.88067 1.90353 1.60871 1.58564 1.38227 1.43675 1.06994 1.43988 1.22973 1.18860 0.95046 1.42018 0.88978 0.88036 1.25172 0.95476 0.95616 0.97044 1.69755 1.03054 1.43330 1.33359 0.87092 0.79011 0.78109 0.86132 1.20418 1.21767 1.18638 1.21706 0.99367 0.89162 0.92179 1.22866 0.93871 0.97187 0.88259 1.88242 1.66426 1.24969 1.47612 1.22653 1.00270 0.84607 0.98969 0.93683 0.92747 0.93635 0.93264 0.89675 0.93658 0.87615 0.93255 0.93207 0.91997 0.93000 0.88534 0.92803 0.91839 0.91045 0.89806 0.94169 0.93544 0.90099 0.95291 0.94984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.67 37.16 0.36 -1.63 16 2 C -0.13 -2.08 5.03 -26.73 -0.13 -2.21 16 3 C -0.06 -1.03 1.93 -90.62 -0.18 -1.21 16 4 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 5 C -0.13 -2.19 4.69 -26.73 -0.13 -2.32 16 6 C -0.11 -1.80 5.92 -26.73 -0.16 -1.96 16 7 C -0.12 -2.10 5.70 -26.73 -0.15 -2.25 16 8 C -0.11 -2.07 5.27 -26.75 -0.14 -2.21 16 9 C -0.08 -1.53 1.77 -91.79 -0.16 -1.70 16 10 H 0.08 1.65 7.32 -51.93 -0.38 1.27 16 11 C 0.49 10.74 5.13 -10.99 -0.06 10.69 16 12 O -0.59 -13.33 11.02 5.55 0.06 -13.27 16 13 N -0.46 -10.63 2.15 -114.81 -0.25 -10.88 16 14 C -0.32 -8.14 6.66 -14.93 -0.10 -8.23 16 15 H 0.10 2.73 6.94 -52.48 -0.36 2.37 16 16 C 0.07 1.93 5.33 -17.47 -0.09 1.84 16 17 N -0.86 -23.73 13.96 55.50 0.77 -22.96 16 18 Si 0.87 20.57 24.95 -169.99 -4.24 16.32 16 19 H -0.28 -6.44 6.68 56.52 0.38 -6.06 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 21 H -0.26 -6.21 7.11 56.52 0.40 -5.81 16 22 C 0.10 2.18 4.67 -4.04 -0.02 2.16 16 23 C 0.06 1.11 6.28 37.16 0.23 1.34 16 24 O -0.35 -7.60 10.18 -35.23 -0.36 -7.96 16 25 C 0.03 0.52 11.01 101.05 1.11 1.63 16 26 H 0.04 0.56 8.14 -51.92 -0.42 0.14 16 27 H 0.05 0.73 6.57 -51.93 -0.34 0.39 16 28 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.08 1.60 6.00 -51.93 -0.31 1.29 16 31 H 0.04 0.68 6.56 -51.93 -0.34 0.34 16 32 H 0.11 2.06 5.18 -51.93 -0.27 1.80 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 1.26 7.22 -51.93 -0.37 0.89 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.10 2.05 6.06 -51.93 -0.31 1.74 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.07 1.65 3.18 -51.93 -0.17 1.49 16 41 H 0.08 1.76 7.36 -51.93 -0.38 1.38 16 42 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 338.75 15.07 5.10 5.10 Total: -1.00 -27.72 338.75 -6.42 -34.14 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -7.90 Total: 5.55 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: 0.39 Total: -6.05 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.53 Total: -33.83 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.30 Total: -21.23 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.24 Total: 16.32 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -27.72 -6.42 -34.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457201702.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.593 kcal (2) G-P(sol) polarization free energy of solvation -27.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds