Wall clock time and date at job start Tue Mar 31 2020 05:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46952 * 2 1 4 4 C 1.53003 * 109.46626 * 180.02562 * 3 2 1 5 5 H 1.09000 * 110.43631 * 52.46298 * 4 3 2 6 6 C 1.54265 * 110.60118 * 289.83882 * 4 3 2 7 7 C 1.53871 * 106.60210 * 217.65973 * 6 4 3 8 8 C 1.54270 * 106.59804 * 0.02562 * 7 6 4 9 9 C 1.54891 * 104.19666 * 23.61126 * 8 7 6 10 10 H 1.08998 * 110.91595 * 80.44127 * 9 8 7 11 11 C 1.50695 * 110.75484 * 203.74703 * 9 8 7 12 12 O 1.21294 * 120.00536 * 113.32982 * 11 9 8 13 13 N 1.34777 * 119.99536 * 293.59725 * 11 9 8 14 14 C 1.37095 * 120.00160 * 359.73099 * 13 11 9 15 15 H 1.08001 * 120.00155 * 318.19592 * 14 13 11 16 16 C 1.38953 * 119.99938 * 138.19869 * 14 13 11 17 17 N 1.31411 * 120.00120 * 341.97686 * 16 14 13 18 18 Si 1.86797 * 119.99736 * 161.96865 * 16 14 13 19 19 H 1.48493 * 109.47349 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46878 * 120.00491 * 18 16 14 21 21 H 1.48501 * 109.47296 * 240.00133 * 18 16 14 22 22 C 1.46505 * 119.99696 * 179.72986 * 13 11 9 23 23 C 1.53002 * 109.47361 * 84.47543 * 22 13 11 24 24 O 1.42897 * 109.46939 * 64.99600 * 23 22 13 25 25 C 1.42901 * 113.99778 * 179.97438 * 24 23 22 26 26 H 1.08997 * 109.47568 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46854 * 300.00197 * 1 2 3 28 28 H 1.09002 * 109.47067 * 59.99259 * 1 2 3 29 29 H 1.08998 * 109.46842 * 240.00563 * 2 1 3 30 30 H 1.08992 * 109.47172 * 120.00194 * 2 1 3 31 31 H 1.08994 * 109.47205 * 60.00224 * 3 2 1 32 32 H 1.09002 * 109.47394 * 299.99972 * 3 2 1 33 33 H 1.09000 * 110.03005 * 336.94702 * 6 4 3 34 34 H 1.09000 * 110.03148 * 98.32248 * 6 4 3 35 35 H 1.08998 * 110.03511 * 119.28806 * 7 6 4 36 36 H 1.08998 * 110.03431 * 240.67028 * 7 6 4 37 37 H 1.09004 * 110.48507 * 264.93285 * 8 7 6 38 38 H 1.08997 * 110.48676 * 142.28744 * 8 7 6 39 39 H 0.97002 * 120.00029 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.46851 * 204.47506 * 22 13 11 41 41 H 1.09005 * 109.46988 * 324.47125 * 22 13 11 42 42 H 1.08995 * 109.46748 * 185.00065 * 23 22 13 43 43 H 1.09003 * 109.46808 * 304.99832 * 23 22 13 44 44 H 1.09000 * 109.47051 * 180.02562 * 25 24 23 45 45 H 1.08996 * 109.47354 * 300.00882 * 25 24 23 46 46 H 1.09005 * 109.46726 * 60.00194 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9502 0.8202 -0.8108 6 6 4.1133 0.9521 1.3574 7 6 5.3609 1.7992 1.6634 8 6 5.5319 2.7752 0.4810 9 6 4.1115 2.8885 -0.1264 10 1 3.4973 3.5826 0.4471 11 6 4.1809 3.3086 -1.5720 12 8 3.8341 2.5404 -2.4442 13 7 4.6335 4.5361 -1.8959 14 6 5.0255 5.4044 -0.9101 15 1 4.4436 5.4915 -0.0044 16 6 6.1714 6.1725 -1.0762 17 7 7.0637 5.8347 -1.9798 18 14 6.4435 7.6856 -0.0150 19 1 5.3004 7.8472 0.9190 20 1 7.6986 7.5257 0.7624 21 1 6.5481 8.8863 -0.8825 22 6 4.7065 4.9424 -3.3016 23 6 3.3439 5.4743 -3.7503 24 8 3.0369 6.6680 -3.0271 25 6 1.7783 7.2496 -3.3730 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5140 -0.8899 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.6767 1.9563 0.8899 32 1 1.6766 1.9564 -0.8900 33 1 3.3630 1.0981 2.1344 34 1 4.3834 -0.1019 1.2929 35 1 5.2161 2.3563 2.5891 36 1 6.2371 1.1564 1.7481 37 1 6.2288 2.3684 -0.2517 38 1 5.8738 3.7476 0.8354 39 1 7.8639 6.3707 -2.0955 40 1 5.4572 5.7246 -3.4151 41 1 4.9810 4.0836 -3.9142 42 1 3.3729 5.6933 -4.8176 43 1 2.5783 4.7236 -3.5541 44 1 1.6198 8.1512 -2.7812 45 1 1.7752 7.5055 -4.4325 46 1 0.9800 6.5358 -3.1693 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457203503.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:18 Heat of formation + Delta-G solvation = -109.158594 kcal Electronic energy + Delta-G solvation = -24216.704935 eV Core-core repulsion = 20912.418686 eV Total energy + Delta-G solvation = -3304.286249 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -39.26250 -37.48175 -36.53645 -34.56903 -34.07334 -31.50438 -29.76386 -29.26530 -27.86012 -25.76281 -24.85280 -24.44542 -22.31322 -21.21680 -20.20684 -19.14650 -18.75068 -16.95042 -16.14893 -15.48025 -15.29888 -14.93523 -14.55488 -14.42814 -14.29035 -14.14084 -13.72042 -13.37677 -13.09708 -12.55499 -12.43328 -12.18056 -11.97378 -11.90466 -11.36139 -11.25758 -11.15861 -11.04405 -10.96428 -10.87897 -10.62419 -10.57274 -10.50538 -10.27497 -10.05956 -9.93111 -9.89013 -9.85439 -9.67336 -9.03292 -8.90467 -8.25135 -7.36209 -6.25526 -3.94860 3.19799 3.30445 3.34162 4.00535 4.23195 4.52701 4.80962 5.05313 5.08165 5.23150 5.25781 5.40403 5.44451 5.51581 5.67381 5.73592 5.83773 5.96894 5.99818 6.03247 6.03798 6.06660 6.10973 6.13252 6.16605 6.23408 6.29169 6.35397 6.37237 6.39048 6.44074 6.52179 6.60400 6.67190 6.77265 6.85162 6.97255 7.12194 7.15869 7.29160 7.56377 7.87190 8.11113 8.47554 9.21783 9.63357 10.05778 10.78926 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.014202 B = 0.006535 C = 0.005124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.139712 B = 4283.287676 C = 5462.795202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.106 4.106 4 C -0.074 4.074 5 H 0.081 0.919 6 C -0.118 4.118 7 C -0.126 4.126 8 C -0.097 4.097 9 C -0.082 4.082 10 H 0.083 0.917 11 C 0.481 3.519 12 O -0.609 6.609 13 N -0.431 5.431 14 C -0.314 4.314 15 H 0.083 0.917 16 C 0.048 3.952 17 N -0.866 5.866 18 Si 0.909 3.091 19 H -0.269 1.269 20 H -0.285 1.285 21 H -0.281 1.281 22 C 0.121 3.879 23 C 0.052 3.948 24 O -0.365 6.365 25 C 0.031 3.969 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.082 0.918 39 H 0.266 0.734 40 H 0.105 0.895 41 H 0.068 0.932 42 H 0.037 0.963 43 H 0.041 0.959 44 H 0.077 0.923 45 H 0.029 0.971 46 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.088 -4.006 3.601 8.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.143 4.143 4 C -0.093 4.093 5 H 0.100 0.900 6 C -0.155 4.155 7 C -0.164 4.164 8 C -0.135 4.135 9 C -0.103 4.103 10 H 0.101 0.899 11 C 0.271 3.729 12 O -0.496 6.496 13 N -0.148 5.148 14 C -0.443 4.443 15 H 0.101 0.899 16 C -0.157 4.157 17 N -0.504 5.504 18 Si 0.737 3.263 19 H -0.193 1.193 20 H -0.211 1.211 21 H -0.207 1.207 22 C -0.003 4.003 23 C -0.026 4.026 24 O -0.283 6.283 25 C -0.066 4.066 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.101 0.899 39 H 0.076 0.924 40 H 0.123 0.877 41 H 0.086 0.914 42 H 0.055 0.945 43 H 0.059 0.941 44 H 0.095 0.905 45 H 0.048 0.952 46 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -6.932 -4.203 3.230 8.727 hybrid contribution -0.030 0.936 0.217 0.962 sum -6.962 -3.267 3.447 8.428 Atomic orbital electron populations 1.21777 0.96604 1.00872 1.01580 1.21514 0.95075 0.97693 1.01622 1.21572 0.95258 0.95950 1.01568 1.21852 0.94420 0.96179 0.96840 0.90017 1.22216 0.97236 0.98854 0.97237 1.22184 0.97353 0.97893 0.98921 1.22114 0.95617 0.99730 0.96016 1.21892 0.97817 0.95864 0.94769 0.89900 1.20403 0.80999 0.81393 0.90154 1.90491 1.55198 1.53087 1.50825 1.43264 1.55699 1.10766 1.05092 1.19197 1.06916 1.18873 0.99271 0.89930 1.25284 0.94318 0.98908 0.97159 1.69930 1.08468 1.37396 1.34567 0.86158 0.78039 0.82268 0.79869 1.19313 1.21090 1.20701 1.21320 0.94465 1.00152 0.84361 1.23059 0.99517 0.86313 0.93698 1.88128 1.35377 1.40864 1.63960 1.22639 0.87125 0.97941 0.98916 0.93339 0.93106 0.92870 0.92134 0.92453 0.92800 0.91716 0.92384 0.92634 0.92391 0.92597 0.92032 0.89914 0.92393 0.87715 0.91424 0.94474 0.94071 0.90452 0.95203 0.95030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.91 37.16 0.37 -1.40 16 2 C -0.12 -1.63 5.81 -26.73 -0.16 -1.79 16 3 C -0.11 -1.68 4.60 -26.73 -0.12 -1.81 16 4 C -0.07 -1.30 1.93 -88.94 -0.17 -1.47 16 5 H 0.08 1.61 7.44 -51.93 -0.39 1.22 16 6 C -0.12 -1.74 5.70 -25.62 -0.15 -1.88 16 7 C -0.13 -1.95 6.80 -25.61 -0.17 -2.12 16 8 C -0.10 -1.88 5.60 -25.07 -0.14 -2.02 16 9 C -0.08 -1.66 1.86 -89.76 -0.17 -1.83 16 10 H 0.08 1.67 7.52 -51.93 -0.39 1.28 16 11 C 0.48 11.59 6.97 -10.99 -0.08 11.52 16 12 O -0.61 -15.74 15.40 5.54 0.09 -15.66 16 13 N -0.43 -10.75 2.45 -114.80 -0.28 -11.03 16 14 C -0.31 -7.91 6.76 -14.93 -0.10 -8.01 16 15 H 0.08 2.06 7.16 -52.49 -0.38 1.68 16 16 C 0.05 1.22 4.95 -17.47 -0.09 1.14 16 17 N -0.87 -22.92 11.66 55.50 0.65 -22.27 16 18 Si 0.91 20.02 29.59 -169.99 -5.03 14.99 16 19 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 20 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 C 0.12 2.91 5.26 -4.04 -0.02 2.89 16 23 C 0.05 1.09 6.24 37.16 0.23 1.32 16 24 O -0.37 -7.83 10.44 -35.23 -0.37 -8.20 16 25 C 0.03 0.50 11.01 101.05 1.11 1.61 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.71 7.63 -51.93 -0.40 0.31 16 31 H 0.05 0.80 7.96 -51.93 -0.41 0.38 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.06 0.78 7.72 -51.93 -0.40 0.38 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 1.31 8.04 -51.93 -0.42 0.89 16 38 H 0.08 1.70 7.12 -51.93 -0.37 1.33 16 39 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 40 H 0.10 2.70 5.81 -51.93 -0.30 2.40 16 41 H 0.07 1.65 7.59 -51.93 -0.39 1.25 16 42 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 362.41 15.07 5.46 5.46 Total: -1.00 -28.38 362.41 -7.61 -35.99 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -8.48 Total: 4.56 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: 0.35 Total: -3.84 kcal Atomic # 7 Polarization: -33.67 SS G_CDS: 0.37 Total: -33.31 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.28 Total: -23.85 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.03 Total: 14.99 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.38 -7.61 -35.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457203503.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.171 kcal (2) G-P(sol) polarization free energy of solvation -28.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds