Wall clock time and date at job start Tue Mar 31 2020 05:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46772 * 2 1 4 4 C 1.52998 * 109.47180 * 304.99996 * 3 2 1 5 5 C 1.52999 * 109.47029 * 184.99873 * 3 2 1 6 6 O 1.42902 * 109.47341 * 65.00282 * 3 2 1 7 7 C 1.42897 * 114.00138 * 179.97438 * 6 3 2 8 8 C 1.50707 * 109.47127 * 179.97438 * 7 6 3 9 9 O 1.21298 * 119.99851 * 354.17985 * 8 7 6 10 10 N 1.34772 * 120.00076 * 174.17837 * 8 7 6 11 11 C 1.37100 * 119.99704 * 356.28575 * 10 8 7 12 12 H 1.07999 * 119.99538 * 232.18477 * 11 10 8 13 13 C 1.38947 * 120.00208 * 52.18793 * 11 10 8 14 14 N 1.31413 * 119.99844 * 26.85440 * 13 11 10 15 15 Si 1.86795 * 119.99897 * 206.85570 * 13 11 10 16 16 H 1.48503 * 109.47247 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47162 * 119.99800 * 15 13 11 18 18 H 1.48498 * 109.47160 * 239.99944 * 15 13 11 19 19 C 1.46498 * 120.00086 * 176.01105 * 10 8 7 20 20 C 1.54264 * 110.03345 * 237.90714 * 19 10 8 21 21 C 1.54963 * 104.16075 * 217.13593 * 20 19 10 22 22 C 1.54890 * 102.77713 * 37.89003 * 21 20 19 23 23 C 1.53874 * 110.03218 * 120.68935 * 19 10 8 24 24 H 1.09001 * 109.47350 * 299.99950 * 1 2 3 25 25 H 1.08994 * 109.47038 * 60.00099 * 1 2 3 26 26 H 1.09000 * 109.46667 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47102 * 239.99618 * 2 1 3 28 28 H 1.09000 * 109.46609 * 120.00001 * 2 1 3 29 29 H 1.09000 * 109.46783 * 180.02562 * 4 3 2 30 30 H 1.09000 * 109.47019 * 299.99931 * 4 3 2 31 31 H 1.08994 * 109.47091 * 60.00310 * 4 3 2 32 32 H 1.09007 * 109.47148 * 299.99809 * 5 3 2 33 33 H 1.09000 * 109.47176 * 60.00065 * 5 3 2 34 34 H 1.09000 * 109.47355 * 180.02562 * 5 3 2 35 35 H 1.08997 * 109.46870 * 59.99971 * 7 6 3 36 36 H 1.08998 * 109.47069 * 299.99572 * 7 6 3 37 37 H 0.96996 * 119.99584 * 184.89184 * 14 13 11 38 38 H 1.09003 * 110.01882 * 359.29692 * 19 10 8 39 39 H 1.08999 * 110.48823 * 335.78579 * 20 19 10 40 40 H 1.08997 * 110.48731 * 98.42680 * 20 19 10 41 41 H 1.09000 * 110.72216 * 279.57192 * 21 20 19 42 42 H 1.08998 * 110.92298 * 156.29537 * 21 20 19 43 43 H 1.08999 * 110.48131 * 203.41012 * 22 21 20 44 44 H 1.08999 * 110.60093 * 80.81636 * 22 21 20 45 45 H 1.09002 * 110.03656 * 238.56742 * 23 19 10 46 46 H 1.08998 * 110.03402 * 0.02562 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4299 2.1991 -1.1816 5 6 3.5648 1.4444 -0.1257 6 8 1.6619 2.0814 1.2211 7 6 2.0922 3.4402 1.3236 8 6 1.6410 4.0118 2.6430 9 8 0.9241 3.3602 3.3728 10 7 2.0342 5.2470 3.0120 11 6 2.9053 5.9532 2.2233 12 1 3.8013 6.3761 2.6531 13 6 2.6355 6.1250 0.8712 14 7 1.3936 6.1081 0.4417 15 14 4.0379 6.3798 -0.3361 16 1 5.3304 6.3571 0.3947 17 1 4.0231 5.2934 -1.3484 18 1 3.8751 7.6907 -1.0144 19 6 1.5260 5.8374 4.2527 20 6 0.8122 7.1710 3.9497 21 6 1.1799 8.0791 5.1504 22 6 2.6524 7.6916 5.4346 23 6 2.6953 6.1680 5.1967 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.7935 3.2266 -1.1818 30 1 1.7183 1.7118 -2.1130 31 1 0.3436 2.1978 -1.0920 32 1 3.9994 0.9054 0.7162 33 1 3.8532 0.9571 -1.0571 34 1 3.9281 2.4720 -0.1252 35 1 1.6590 4.0208 0.5092 36 1 3.1796 3.4826 1.2617 37 1 1.2086 6.1567 -0.5092 38 1 0.8368 5.1472 4.7394 39 1 1.1840 7.5999 3.0192 40 1 -0.2665 7.0233 3.8984 41 1 0.5487 7.8556 6.0104 42 1 1.1029 9.1321 4.8798 43 1 2.9156 7.9241 6.4665 44 1 3.3237 8.2043 4.7457 45 1 2.5732 5.6390 6.1419 46 1 3.6409 5.8896 4.7315 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457589157.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:03 Heat of formation + Delta-G solvation = -95.932481 kcal Electronic energy + Delta-G solvation = -24540.515953 eV Core-core repulsion = 21236.803232 eV Total energy + Delta-G solvation = -3303.712722 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.18491 -38.29186 -36.47340 -34.15601 -33.56441 -31.48561 -29.90896 -27.93077 -27.84673 -27.09693 -26.08107 -24.58908 -23.08546 -20.04028 -19.89529 -19.32796 -19.03422 -16.74951 -15.99018 -15.57961 -15.27040 -14.81637 -14.71016 -14.48400 -14.24144 -13.75250 -13.39100 -13.30729 -12.81028 -12.71698 -12.50511 -12.21151 -11.85768 -11.70488 -11.56406 -11.43597 -11.31294 -11.06250 -10.98953 -10.93388 -10.72134 -10.61132 -10.47215 -10.41050 -10.36033 -10.32841 -9.97304 -9.92151 -9.63742 -9.00461 -8.62163 -8.14768 -7.34531 -6.47333 -4.25678 3.02463 3.15848 3.19224 3.94924 4.11238 4.16666 4.74806 5.02028 5.12129 5.19137 5.37465 5.38963 5.40678 5.57262 5.61379 5.80019 5.85729 5.90215 5.96080 6.10625 6.10868 6.14093 6.24163 6.26328 6.28607 6.34032 6.34378 6.37339 6.42925 6.50793 6.54359 6.56599 6.58797 6.62620 6.73162 6.75381 6.86413 6.93060 7.13633 7.31948 7.39749 7.94941 8.03624 8.60234 8.86615 9.59646 10.02119 10.52380 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.017572 B = 0.006400 C = 0.005281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.088072 B = 4373.638035 C = 5300.604332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.104 4.104 3 C 0.110 3.890 4 C -0.180 4.180 5 C -0.180 4.180 6 O -0.361 6.361 7 C 0.046 3.954 8 C 0.515 3.485 9 O -0.594 6.594 10 N -0.448 5.448 11 C -0.335 4.335 12 H 0.084 0.916 13 C 0.050 3.950 14 N -0.842 5.842 15 Si 0.886 3.114 16 H -0.264 1.264 17 H -0.275 1.275 18 H -0.279 1.279 19 C 0.134 3.866 20 C -0.121 4.121 21 C -0.123 4.123 22 C -0.116 4.116 23 C -0.127 4.127 24 H 0.067 0.933 25 H 0.054 0.946 26 H 0.046 0.954 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.102 0.898 36 H 0.063 0.937 37 H 0.269 0.731 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.050 0.950 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.051 0.949 44 H 0.064 0.936 45 H 0.052 0.948 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.624 -2.989 -1.447 4.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.141 4.141 3 C 0.070 3.930 4 C -0.237 4.237 5 C -0.237 4.237 6 O -0.280 6.280 7 C -0.032 4.032 8 C 0.304 3.696 9 O -0.478 6.478 10 N -0.170 5.170 11 C -0.463 4.463 12 H 0.102 0.898 13 C -0.157 4.157 14 N -0.478 5.478 15 Si 0.711 3.289 16 H -0.187 1.187 17 H -0.200 1.200 18 H -0.205 1.205 19 C 0.031 3.969 20 C -0.159 4.159 21 C -0.161 4.161 22 C -0.154 4.154 23 C -0.165 4.165 24 H 0.086 0.914 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.120 0.880 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.110 0.890 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.083 0.917 45 H 0.071 0.929 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.044 -3.316 -1.084 4.044 hybrid contribution 0.849 0.505 -1.109 1.486 sum 2.893 -2.811 -2.193 4.592 Atomic orbital electron populations 1.21789 0.95468 1.00741 1.02888 1.21442 0.96737 0.94129 1.01792 1.21394 0.92912 0.93041 0.85627 1.22477 1.02251 1.01159 0.97799 1.22445 0.96657 1.02736 1.01878 1.87982 1.78180 1.25466 1.36363 1.22608 0.99153 0.82432 0.98999 1.19955 0.81527 0.81364 0.86724 1.90513 1.41388 1.60683 1.55253 1.43356 1.41953 1.11837 1.19809 1.19210 1.01434 1.35583 0.90056 0.89792 1.25518 0.95879 0.95124 0.99218 1.70181 1.17923 1.44011 1.15656 0.86532 0.82839 0.78499 0.81050 1.18749 1.20038 1.20482 1.21565 0.94165 0.94393 0.86819 1.22600 0.99000 0.95246 0.99054 1.22451 0.96247 0.98989 0.98382 1.22256 0.96933 0.96428 0.99766 1.22403 1.00265 0.95343 0.98525 0.91377 0.92744 0.93487 0.91434 0.91420 0.91981 0.92405 0.91387 0.91906 0.92176 0.91946 0.88036 0.91917 0.92055 0.90456 0.88959 0.93103 0.92574 0.92436 0.92996 0.91705 0.92901 0.91086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.32 37.16 0.35 -1.87 16 2 C -0.10 -1.52 5.23 -26.73 -0.14 -1.66 16 3 C 0.11 1.92 0.82 -90.62 -0.07 1.85 16 4 C -0.18 -2.98 7.76 37.16 0.29 -2.69 16 5 C -0.18 -2.83 8.25 37.16 0.31 -2.52 16 6 O -0.36 -8.10 9.06 -55.07 -0.50 -8.60 16 7 C 0.05 1.10 3.78 36.01 0.14 1.24 16 8 C 0.51 13.66 7.35 -10.98 -0.08 13.58 16 9 O -0.59 -17.24 15.87 -14.30 -0.23 -17.47 16 10 N -0.45 -11.10 2.37 -106.54 -0.25 -11.35 16 11 C -0.34 -8.12 6.80 -14.93 -0.10 -8.23 16 12 H 0.08 2.00 7.29 -52.49 -0.38 1.62 16 13 C 0.05 1.19 3.35 -17.47 -0.06 1.13 16 14 N -0.84 -21.16 11.59 55.50 0.64 -20.52 16 15 Si 0.89 18.36 29.63 -169.99 -5.04 13.32 16 16 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 17 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 18 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 19 C 0.13 3.00 3.29 -66.82 -0.22 2.78 16 20 C -0.12 -2.49 6.42 -25.03 -0.16 -2.65 16 21 C -0.12 -2.03 6.91 -24.70 -0.17 -2.20 16 22 C -0.12 -1.90 6.83 -25.07 -0.17 -2.07 16 23 C -0.13 -2.40 6.26 -25.61 -0.16 -2.56 16 24 H 0.07 1.18 7.82 -51.93 -0.41 0.78 16 25 H 0.05 0.75 6.34 -51.93 -0.33 0.42 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.06 1.14 6.54 -51.93 -0.34 0.80 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.14 6.34 -51.93 -0.33 0.81 16 32 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 1.06 6.54 -51.93 -0.34 0.72 16 35 H 0.10 2.47 3.69 -51.93 -0.19 2.28 16 36 H 0.06 1.44 6.06 -51.93 -0.31 1.12 16 37 H 0.27 6.39 8.32 -40.82 -0.34 6.05 16 38 H 0.08 1.85 6.95 -51.93 -0.36 1.49 16 39 H 0.09 2.15 7.02 -51.93 -0.36 1.78 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.07 1.41 6.95 -51.93 -0.36 1.05 16 LS Contribution 349.79 15.07 5.27 5.27 Total: -1.00 -28.26 349.79 -8.29 -36.55 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -7.93 Total: 8.68 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -0.26 Total: -5.88 kcal Atomic # 7 Polarization: -32.26 SS G_CDS: 0.39 Total: -31.87 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.73 Total: -26.07 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.04 Total: 13.32 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.26 -8.29 -36.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457589157.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.380 kcal (2) G-P(sol) polarization free energy of solvation -28.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds