Wall clock time and date at job start Tue Mar 31 2020 05:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47056 * 2 1 4 4 C 1.50703 * 109.47304 * 239.99919 * 2 1 3 5 5 H 1.08003 * 119.99742 * 239.99956 * 4 2 1 6 6 C 1.37873 * 119.99873 * 59.99818 * 4 2 1 7 7 N 1.31509 * 120.00433 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99720 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47103 * 89.99986 * 8 6 4 10 10 H 1.48498 * 109.46997 * 209.99993 * 8 6 4 11 11 H 1.48501 * 109.47418 * 330.00122 * 8 6 4 12 12 C 1.53002 * 109.46982 * 119.99686 * 2 1 3 13 13 N 1.46499 * 109.47125 * 300.00050 * 12 2 1 14 14 C 1.34777 * 119.99824 * 179.97438 * 13 12 2 15 15 O 1.21278 * 120.00191 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99991 * 180.02562 * 14 13 12 17 17 C 1.53002 * 109.47292 * 180.02562 * 16 14 13 18 18 O 1.42895 * 109.47074 * 300.00254 * 17 16 14 19 19 C 1.52997 * 109.47143 * 180.02562 * 17 16 14 20 20 C 1.53002 * 109.46817 * 180.02562 * 19 17 16 21 21 C 1.53000 * 109.47233 * 60.00194 * 20 19 17 22 22 C 1.52997 * 109.47060 * 299.99657 * 21 20 19 23 23 C 1.52999 * 109.47317 * 59.99960 * 22 21 20 24 24 H 1.08992 * 109.47061 * 300.00022 * 1 2 3 25 25 H 1.08998 * 109.47061 * 60.00840 * 1 2 3 26 26 H 1.09002 * 109.46935 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47452 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.46997 * 300.00058 * 3 2 1 29 29 H 1.09000 * 109.47054 * 59.99791 * 3 2 1 30 30 H 0.97001 * 120.00323 * 179.97438 * 7 6 4 31 31 H 1.09004 * 109.46930 * 180.02562 * 12 2 1 32 32 H 1.09002 * 109.47067 * 60.00348 * 12 2 1 33 33 H 0.97004 * 120.00104 * 0.02562 * 13 12 2 34 34 H 1.09004 * 109.47113 * 60.00142 * 16 14 13 35 35 H 1.09002 * 109.47152 * 300.00060 * 16 14 13 36 36 H 0.96708 * 114.00310 * 59.99775 * 18 17 16 37 37 H 1.08993 * 109.47194 * 59.99677 * 19 17 16 38 38 H 1.09002 * 109.46695 * 299.99691 * 19 17 16 39 39 H 1.08992 * 109.47063 * 299.99823 * 20 19 17 40 40 H 1.09004 * 109.46733 * 179.97438 * 20 19 17 41 41 H 1.09002 * 109.47398 * 59.99826 * 21 20 19 42 42 H 1.09001 * 109.47194 * 180.02562 * 21 20 19 43 43 H 1.08996 * 109.47853 * 180.02562 * 22 21 20 44 44 H 1.09002 * 109.47153 * 300.00319 * 22 21 20 45 45 H 1.09000 * 109.47486 * 180.02562 * 23 22 21 46 46 H 1.09002 * 109.46716 * 60.00091 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6534 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8295 -2.6035 8 14 2.3227 -1.1196 -4.0078 9 1 1.3450 -2.1618 -4.4122 10 1 2.4874 -0.1403 -5.1119 11 1 3.6311 -1.7566 -3.7118 12 6 2.0400 -0.7212 1.2493 13 7 1.5517 -0.0305 2.4454 14 6 1.8768 -0.4913 3.6695 15 8 2.5741 -1.4773 3.7809 16 6 1.3740 0.2189 4.9000 17 6 1.8841 -0.5023 6.1493 18 8 1.4083 -1.8497 6.1491 19 6 1.3730 0.2183 7.3985 20 6 1.8837 -0.5025 8.6477 21 6 3.4137 -0.5007 8.6480 22 6 3.9247 -1.2213 7.3988 23 6 3.4141 -0.5006 6.1495 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 0.7088 1.1611 -3.4845 31 1 3.1301 -0.7208 1.2495 32 1 1.6767 -1.7489 1.2493 33 1 0.9937 0.7579 2.3564 34 1 0.2840 0.2188 4.8996 35 1 1.7373 1.2466 4.9004 36 1 1.6940 -2.3676 5.3840 37 1 0.2831 0.2175 7.3980 38 1 1.7357 1.2462 7.3988 39 1 1.5215 -1.5305 8.6476 40 1 1.5200 0.0112 9.5377 41 1 3.7759 0.5273 8.6482 42 1 3.7775 -1.0146 9.5378 43 1 5.0147 -1.2205 7.3991 44 1 3.5625 -2.2494 7.3987 45 1 3.7778 -1.0142 5.2596 46 1 3.7763 0.5274 6.1497 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457989404.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:09 Heat of formation + Delta-G solvation = -122.485082 kcal Electronic energy + Delta-G solvation = -23573.453580 eV Core-core repulsion = 20268.589452 eV Total energy + Delta-G solvation = -3304.864129 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.33782 -38.44233 -36.40444 -34.86519 -33.37860 -31.75861 -30.78128 -30.73886 -27.53916 -25.77519 -25.52880 -24.61708 -22.77296 -21.66399 -20.08851 -19.72503 -18.82193 -16.93120 -16.28964 -15.83836 -15.78265 -15.32820 -15.02116 -14.71607 -14.38881 -14.03273 -13.62811 -13.34098 -13.03317 -12.84009 -12.76297 -12.36128 -12.25080 -12.00740 -11.78087 -11.52737 -11.38665 -11.23478 -11.07790 -10.89240 -10.75032 -10.72563 -10.52075 -10.42325 -10.30451 -10.21041 -9.68331 -9.62602 -9.47011 -9.17547 -8.82704 -8.50915 -8.36633 -6.05743 -4.16099 2.92011 3.25945 3.33108 3.36606 3.65997 4.30828 4.37135 4.62308 4.73902 4.79365 5.03510 5.07680 5.18870 5.21156 5.33789 5.44987 5.48027 5.54082 5.63486 5.67257 5.77678 5.93197 6.03809 6.12596 6.17139 6.19162 6.21906 6.27244 6.44870 6.45705 6.48966 6.72994 6.77320 6.87822 6.96779 6.96937 7.30350 7.51007 7.65566 7.91505 7.96475 7.97421 8.10142 8.34193 8.61358 8.84643 9.50090 10.95674 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.040620 B = 0.003302 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.146455 B = 8477.771529 C = 8707.476314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.507 4.507 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.130 3.870 13 N -0.713 5.713 14 C 0.508 3.492 15 O -0.556 6.556 16 C -0.175 4.175 17 C 0.157 3.843 18 O -0.563 6.563 19 C -0.105 4.105 20 C -0.114 4.114 21 C -0.119 4.119 22 C -0.112 4.112 23 C -0.157 4.157 24 H 0.006 0.994 25 H 0.086 0.914 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.086 0.914 29 H 0.006 0.994 30 H 0.260 0.740 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.399 0.601 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.386 0.614 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.067 0.933 45 H 0.096 0.904 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.695 1.807 17.787 17.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 C 0.008 3.992 13 N -0.362 5.362 14 C 0.295 3.705 15 O -0.438 6.438 16 C -0.215 4.215 17 C 0.116 3.884 18 O -0.374 6.374 19 C -0.142 4.142 20 C -0.151 4.151 21 C -0.157 4.157 22 C -0.150 4.150 23 C -0.195 4.195 24 H 0.025 0.975 25 H 0.104 0.896 26 H 0.046 0.954 27 H 0.045 0.955 28 H 0.104 0.896 29 H 0.025 0.975 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.234 0.766 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.239 0.761 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.086 0.914 45 H 0.115 0.885 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.840 1.417 18.219 18.294 hybrid contribution 0.270 -0.077 -1.566 1.591 sum 1.110 1.340 16.653 16.744 Atomic orbital electron populations 1.21835 0.97754 0.99193 1.00094 1.18356 0.92788 0.92742 0.90599 1.21831 0.98562 0.98369 1.00088 1.20986 1.31557 1.12129 0.89907 0.92438 1.24878 0.94836 0.94898 0.98881 1.69797 1.36648 1.22735 1.23274 0.86569 0.79344 0.79397 0.82557 1.20682 1.21247 1.19886 1.21742 0.98140 0.95836 0.83487 1.46374 1.52032 1.31635 1.06155 1.20538 0.80236 0.84802 0.84954 1.90502 1.39274 1.27391 1.86590 1.22503 1.03365 1.01526 0.94136 1.20725 0.92754 0.82909 0.92009 1.86345 1.77086 1.22748 1.51182 1.21527 1.00886 0.98378 0.93457 1.21427 0.95516 1.01563 0.96637 1.21555 0.95835 1.00329 0.97963 1.21411 0.99441 1.00144 0.93990 1.22462 0.95470 1.01229 1.00323 0.97535 0.89565 0.95434 0.95458 0.89568 0.97548 0.92970 0.92676 0.92629 0.76607 0.88429 0.88482 0.76115 0.91430 0.90995 0.91052 0.92488 0.92464 0.92436 0.92569 0.91440 0.88527 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 2 C 0.06 1.26 0.50 -155.66 -0.08 1.19 16 3 C -0.13 -2.88 8.08 37.16 0.30 -2.58 16 4 C -0.51 -13.11 8.01 -34.44 -0.28 -13.39 16 5 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.36 9.35 55.43 0.52 -22.85 16 8 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 12 C 0.13 2.67 4.50 -4.04 -0.02 2.65 16 13 N -0.71 -11.92 4.96 -60.29 -0.30 -12.22 16 14 C 0.51 7.97 7.33 -10.98 -0.08 7.89 16 15 O -0.56 -10.06 11.70 -12.71 -0.15 -10.20 16 16 C -0.17 -2.09 4.98 -27.88 -0.14 -2.22 16 17 C 0.16 1.91 0.68 -90.62 -0.06 1.85 16 18 O -0.56 -7.96 11.60 -53.50 -0.62 -8.58 16 19 C -0.10 -1.06 4.94 -26.73 -0.13 -1.20 16 20 C -0.11 -1.12 5.78 -26.73 -0.15 -1.28 16 21 C -0.12 -1.15 5.92 -26.73 -0.16 -1.30 16 22 C -0.11 -1.26 5.78 -26.73 -0.15 -1.42 16 23 C -0.16 -1.96 4.60 -26.73 -0.12 -2.08 16 24 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 25 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.09 2.11 6.07 -51.93 -0.32 1.80 16 29 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 30 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 31 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.40 6.08 6.16 -40.82 -0.25 5.83 16 34 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.39 5.78 6.54 45.56 0.30 6.08 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.80 7.68 -51.93 -0.40 0.40 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.83 7.68 -51.93 -0.40 0.43 16 45 H 0.10 1.45 5.51 -51.93 -0.29 1.17 16 46 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 344.15 15.07 5.19 5.19 Total: -1.00 -26.87 344.15 -8.67 -35.54 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -7.42 Total: 10.47 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: -0.87 Total: -12.86 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: 0.22 Total: -35.07 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.77 Total: -18.78 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -26.87 -8.67 -35.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457989404.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.943 kcal (2) G-P(sol) polarization free energy of solvation -26.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds