Wall clock time and date at job start Tue Mar 31 2020 05:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47411 * 2 1 4 4 C 1.50694 * 109.47321 * 239.99666 * 2 1 3 5 5 H 1.08002 * 120.00312 * 240.00415 * 4 2 1 6 6 C 1.37880 * 119.99882 * 60.00568 * 4 2 1 7 7 N 1.31515 * 119.99840 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00255 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47307 * 89.99666 * 8 6 4 10 10 H 1.48495 * 109.47128 * 209.99870 * 8 6 4 11 11 H 1.48500 * 109.46974 * 329.99873 * 8 6 4 12 12 C 1.53008 * 109.46829 * 119.99906 * 2 1 3 13 13 N 1.46500 * 109.47143 * 299.99868 * 12 2 1 14 14 C 1.34775 * 119.99718 * 179.97438 * 13 12 2 15 15 O 1.21280 * 120.00169 * 4.36983 * 14 13 12 16 16 C 1.50704 * 119.99751 * 184.36433 * 14 13 12 17 17 H 1.08998 * 109.47058 * 128.71584 * 16 14 13 18 18 O 1.42897 * 109.47111 * 8.71449 * 16 14 13 19 19 C 1.53003 * 109.47020 * 248.71822 * 16 14 13 20 20 C 1.53004 * 109.46909 * 293.94965 * 19 16 14 21 21 C 1.52997 * 109.47166 * 180.02562 * 20 19 16 22 22 C 1.53008 * 109.47047 * 59.99691 * 21 20 19 23 23 C 1.53002 * 109.47038 * 300.00076 * 22 21 20 24 24 C 1.52996 * 109.46906 * 173.95029 * 19 16 14 25 25 H 1.09003 * 109.47143 * 300.00284 * 1 2 3 26 26 H 1.09001 * 109.46745 * 59.99438 * 1 2 3 27 27 H 1.08992 * 109.47216 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47142 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47625 * 300.00023 * 3 2 1 30 30 H 1.09003 * 109.47199 * 59.99750 * 3 2 1 31 31 H 0.96998 * 120.00031 * 180.02562 * 7 6 4 32 32 H 1.09001 * 109.46965 * 179.97438 * 12 2 1 33 33 H 1.09002 * 109.47024 * 60.00115 * 12 2 1 34 34 H 0.96992 * 119.99785 * 0.02562 * 13 12 2 35 35 H 0.96702 * 114.00662 * 300.00203 * 18 16 14 36 36 H 1.08995 * 109.47227 * 53.94770 * 19 16 14 37 37 H 1.09003 * 109.47106 * 300.00241 * 20 19 16 38 38 H 1.08993 * 109.47335 * 60.00222 * 20 19 16 39 39 H 1.09003 * 109.47193 * 300.00051 * 21 20 19 40 40 H 1.08993 * 109.47505 * 179.97438 * 21 20 19 41 41 H 1.08995 * 109.47163 * 180.02562 * 22 21 20 42 42 H 1.08995 * 109.47125 * 60.00209 * 22 21 20 43 43 H 1.08995 * 109.47272 * 300.00044 * 23 22 21 44 44 H 1.09003 * 109.46939 * 179.97438 * 23 22 21 45 45 H 1.08998 * 109.46982 * 299.99400 * 24 19 16 46 46 H 1.08995 * 109.47389 * 59.99840 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9437 0.8303 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.3429 -2.1617 -4.4119 10 1 2.4867 -0.1414 -5.1122 11 1 3.6293 -1.7584 -3.7121 12 6 2.0399 -0.7213 1.2493 13 7 1.5516 -0.0306 2.4455 14 6 1.8767 -0.4914 3.6696 15 8 2.6373 -1.4293 3.7822 16 6 1.2952 0.1589 4.8984 17 1 0.8563 -0.6047 5.5404 18 8 0.2858 1.0930 4.5106 19 6 2.4020 0.8911 5.6601 20 6 3.4055 -0.1271 6.2052 21 6 4.5118 0.6049 6.9673 22 6 3.8981 1.3886 8.1294 23 6 2.8946 2.4068 7.5841 24 6 1.7887 1.6751 6.8220 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 0.7092 1.1615 -3.4843 32 1 3.1299 -0.7217 1.2491 33 1 1.6766 -1.7490 1.2493 34 1 0.9937 0.7578 2.3564 35 1 0.6058 1.8025 3.9366 36 1 2.9124 1.5795 4.9865 37 1 2.8950 -0.8156 6.8787 38 1 3.8424 -0.6857 5.3775 39 1 5.0224 1.2936 6.2941 40 1 5.2265 -0.1205 7.3561 41 1 4.6862 1.9105 8.6721 42 1 3.3876 0.7000 8.8025 43 1 3.4051 3.0954 6.9110 44 1 2.4570 2.9648 8.4120 45 1 1.0738 2.4005 6.4336 46 1 1.2782 0.9867 7.4955 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457990799.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:27 Heat of formation + Delta-G solvation = -124.368453 kcal Electronic energy + Delta-G solvation = -23629.657944 eV Core-core repulsion = 20324.712146 eV Total energy + Delta-G solvation = -3304.945798 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.23205 -38.27310 -36.45920 -36.35067 -33.22888 -31.56481 -30.83456 -30.79042 -26.98388 -25.75191 -25.50149 -24.58951 -22.67717 -21.92657 -20.17684 -19.89428 -18.92948 -17.95645 -16.25708 -15.91409 -15.81982 -15.10214 -14.69708 -14.62674 -14.43294 -14.21268 -13.80148 -13.60118 -12.95539 -12.91219 -12.86607 -12.37035 -12.23315 -12.10935 -12.02690 -11.40485 -11.37086 -11.21680 -11.20645 -10.96579 -10.87520 -10.71287 -10.52591 -10.41614 -10.40466 -10.20500 -10.09351 -9.66067 -9.45163 -9.02795 -8.80006 -8.48181 -8.34018 -6.04003 -4.14218 2.90126 3.27120 3.34180 3.37544 3.56537 4.19548 4.38236 4.51933 4.58911 4.67202 4.89419 5.07886 5.12441 5.22791 5.22916 5.33238 5.40941 5.44137 5.55178 5.60811 5.77840 5.93067 6.00083 6.01803 6.03986 6.17307 6.19992 6.29171 6.33836 6.40184 6.47452 6.74014 6.79789 6.89037 6.98479 6.99410 7.29381 7.33800 7.53322 7.67462 7.98669 8.00877 8.12566 8.36017 8.60310 8.86346 9.51749 10.97365 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.032142 B = 0.003580 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.935312 B = 7818.931017 C = 8068.155580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.507 4.507 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.131 3.869 13 N -0.710 5.710 14 C 0.477 3.523 15 O -0.546 6.546 16 C 0.097 3.903 17 H 0.126 0.874 18 O -0.551 6.551 19 C -0.107 4.107 20 C -0.120 4.120 21 C -0.118 4.118 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.108 4.108 25 H 0.008 0.992 26 H 0.085 0.915 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.086 0.914 30 H 0.005 0.995 31 H 0.260 0.740 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.397 0.603 35 H 0.376 0.624 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.070 0.930 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.663 4.405 17.516 18.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 C 0.009 3.991 13 N -0.362 5.362 14 C 0.262 3.738 15 O -0.425 6.425 16 C 0.035 3.965 17 H 0.143 0.857 18 O -0.356 6.356 19 C -0.126 4.126 20 C -0.158 4.158 21 C -0.156 4.156 22 C -0.158 4.158 23 C -0.157 4.157 24 C -0.145 4.145 25 H 0.027 0.973 26 H 0.104 0.896 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.105 0.895 30 H 0.023 0.977 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.234 0.766 35 H 0.224 0.776 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.088 0.912 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.738 3.457 17.780 18.196 hybrid contribution 0.399 0.206 -1.293 1.368 sum 2.137 3.662 16.487 17.024 Atomic orbital electron populations 1.21830 0.97653 0.99234 1.00168 1.18357 0.92860 0.92723 0.90539 1.21826 0.98532 0.98357 1.00039 1.20983 1.31545 1.12112 0.89909 0.92469 1.24879 0.94851 0.94904 0.98852 1.69800 1.36665 1.22692 1.23249 0.86570 0.79324 0.79400 0.82576 1.20700 1.21250 1.19910 1.21741 0.98162 0.95778 0.83456 1.46314 1.52110 1.31688 1.06114 1.21312 0.81965 0.84684 0.85848 1.90656 1.36020 1.29121 1.86738 1.22309 0.89053 0.91658 0.93515 0.85680 1.86624 1.36654 1.41350 1.71012 1.21690 0.95693 0.97811 0.97429 1.21663 0.96077 0.97187 1.00851 1.21524 0.97781 0.99089 0.97176 1.21563 0.98392 0.98046 0.97798 1.21527 0.96719 0.97815 0.99608 1.21477 0.97516 0.99193 0.96337 0.97344 0.89594 0.95476 0.95468 0.89528 0.97651 0.92986 0.92655 0.92761 0.76647 0.77570 0.90724 0.91955 0.89512 0.92141 0.92036 0.92376 0.92104 0.92065 0.92095 0.91180 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 2 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 3 C -0.13 -2.86 8.08 37.15 0.30 -2.56 16 4 C -0.51 -13.21 8.01 -34.44 -0.28 -13.48 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 7 N -0.89 -23.42 9.35 55.43 0.52 -22.90 16 8 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 12 C 0.13 2.75 4.51 -4.04 -0.02 2.73 16 13 N -0.71 -12.27 4.87 -60.29 -0.29 -12.56 16 14 C 0.48 7.92 7.05 -10.98 -0.08 7.85 16 15 O -0.55 -10.83 14.83 5.56 0.08 -10.74 16 16 C 0.10 1.22 3.07 -27.88 -0.09 1.14 16 17 H 0.13 1.56 8.14 -51.93 -0.42 1.13 16 18 O -0.55 -6.51 11.82 -35.23 -0.42 -6.92 16 19 C -0.11 -1.17 1.93 -90.62 -0.17 -1.35 16 20 C -0.12 -1.40 4.87 -26.73 -0.13 -1.53 16 21 C -0.12 -1.17 5.92 -26.73 -0.16 -1.33 16 22 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 23 C -0.12 -1.00 5.92 -26.75 -0.16 -1.16 16 24 C -0.11 -1.00 4.99 -26.76 -0.13 -1.13 16 25 H 0.01 0.15 6.86 -51.93 -0.36 -0.20 16 26 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 30 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 31 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.40 6.16 4.35 -40.82 -0.18 5.98 16 35 H 0.38 3.51 7.88 45.56 0.36 3.87 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 1.25 6.00 -51.93 -0.31 0.94 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.64 7.53 -51.93 -0.39 0.25 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 347.38 15.07 5.23 5.23 Total: -1.00 -28.02 347.38 -8.16 -36.18 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -7.32 Total: 7.90 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -0.94 Total: -11.80 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: 0.22 Total: -35.47 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.33 Total: -17.67 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.02 -8.16 -36.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457990799.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.184 kcal (2) G-P(sol) polarization free energy of solvation -28.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds