Wall clock time and date at job start Tue Mar 31 2020 05:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46800 * 2 1 4 4 C 1.50701 * 109.47145 * 240.00569 * 2 1 3 5 5 H 1.08009 * 119.99651 * 241.34574 * 4 2 1 6 6 C 1.37868 * 120.00338 * 61.34033 * 4 2 1 7 7 N 1.31521 * 120.00453 * 193.97821 * 6 4 2 8 8 Si 1.86801 * 120.00217 * 13.98060 * 6 4 2 9 9 H 1.48505 * 109.47124 * 84.54309 * 8 6 4 10 10 H 1.48497 * 109.47512 * 204.54782 * 8 6 4 11 11 H 1.48505 * 109.46983 * 324.55043 * 8 6 4 12 12 C 1.52998 * 109.47584 * 119.99837 * 2 1 3 13 13 N 1.46496 * 109.47329 * 300.00315 * 12 2 1 14 14 C 1.34773 * 120.00133 * 180.26769 * 13 12 2 15 15 O 1.21281 * 120.00026 * 359.73131 * 14 13 12 16 16 C 1.50704 * 119.99878 * 179.72358 * 14 13 12 17 17 H 1.09000 * 109.47311 * 55.00478 * 16 14 13 18 18 O 1.42903 * 109.47059 * 175.00665 * 16 14 13 19 19 C 1.53006 * 109.47067 * 295.00372 * 16 14 13 20 20 C 1.52999 * 109.47058 * 299.99827 * 19 16 14 21 21 C 1.52999 * 109.46802 * 180.02562 * 20 19 16 22 22 C 1.52999 * 109.47486 * 60.00181 * 21 20 19 23 23 C 1.53003 * 109.46895 * 300.00263 * 22 21 20 24 24 C 1.52999 * 109.47268 * 59.99603 * 23 22 21 25 25 H 1.08998 * 109.47272 * 309.36723 * 1 2 3 26 26 H 1.08992 * 109.47141 * 69.36784 * 1 2 3 27 27 H 1.09004 * 109.46813 * 189.36595 * 1 2 3 28 28 H 1.09008 * 109.47129 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47084 * 299.99863 * 3 2 1 30 30 H 1.08999 * 109.47102 * 60.00497 * 3 2 1 31 31 H 0.96991 * 120.00307 * 180.02562 * 7 6 4 32 32 H 1.08999 * 109.47488 * 180.02562 * 12 2 1 33 33 H 1.09007 * 109.46656 * 60.00290 * 12 2 1 34 34 H 0.97008 * 119.99791 * 359.97438 * 13 12 2 35 35 H 0.96693 * 113.99823 * 59.99781 * 18 16 14 36 36 H 1.08992 * 109.46982 * 60.00583 * 19 16 14 37 37 H 1.08994 * 109.47333 * 300.00355 * 20 19 16 38 38 H 1.08997 * 109.46895 * 60.00341 * 20 19 16 39 39 H 1.09007 * 109.47256 * 300.00227 * 21 20 19 40 40 H 1.09000 * 109.46885 * 180.02562 * 21 20 19 41 41 H 1.08992 * 109.47651 * 179.97438 * 22 21 20 42 42 H 1.09007 * 109.46835 * 59.99788 * 22 21 20 43 43 H 1.08994 * 109.46924 * 299.99318 * 23 22 21 44 44 H 1.08997 * 109.46837 * 179.97438 * 23 22 21 45 45 H 1.09000 * 109.46885 * 179.97438 * 24 23 22 46 46 H 1.09000 * 109.47053 * 60.00263 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6353 -1.6010 -1.1316 6 6 1.7223 -0.2233 -2.4825 7 7 1.9157 -0.9724 -3.5461 8 14 1.0275 1.5007 -2.6684 9 1 2.1416 2.4818 -2.7083 10 1 0.2468 1.5866 -3.9287 11 1 0.1417 1.8043 -1.5158 12 6 2.0401 -0.7212 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8820 -0.4879 3.6694 15 8 2.5793 -1.4740 3.7807 16 6 1.3847 0.2261 4.8999 17 1 0.2983 0.3047 4.8603 18 8 1.7671 -0.5088 6.0643 19 6 1.9957 1.6277 4.9581 20 6 3.5207 1.5174 5.0137 21 6 4.1315 2.9189 5.0725 22 6 3.6267 3.6434 6.3220 23 6 2.1016 3.7536 6.2664 24 6 1.4908 2.3520 6.2076 25 1 -0.3634 0.6518 0.7945 26 1 -0.3633 0.3621 -0.9617 27 1 -0.3633 -1.0140 0.1672 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6979 -0.6297 -4.4269 32 1 3.1301 -0.7208 1.2494 33 1 1.6768 -1.7489 1.2492 34 1 0.9943 0.7582 2.3564 35 1 2.7226 -0.6180 6.1643 36 1 1.7040 2.1883 4.0700 37 1 3.8122 0.9568 5.9018 38 1 3.8803 1.0010 4.1238 39 1 3.8399 3.4800 4.1846 40 1 5.2179 2.8404 5.1117 41 1 4.0621 4.6416 6.3642 42 1 3.9183 3.0823 7.2100 43 1 1.8101 4.3145 5.3786 44 1 1.7420 4.2692 7.1568 45 1 0.4043 2.4306 6.1685 46 1 1.7824 1.7911 7.0956 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457990801.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:32 Heat of formation + Delta-G solvation = -107.322289 kcal Electronic energy + Delta-G solvation = -23969.914010 eV Core-core repulsion = 20665.707389 eV Total energy + Delta-G solvation = -3304.206621 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.38399 -38.44779 -36.92403 -35.84623 -33.46396 -31.83381 -31.21587 -30.95754 -27.47229 -26.43461 -25.47655 -24.65201 -22.92639 -22.04840 -20.26632 -19.77652 -19.26030 -17.65859 -16.63448 -16.13661 -15.88907 -15.40476 -15.12080 -14.87272 -14.43637 -14.31027 -14.06806 -13.81044 -13.22400 -12.99485 -12.80043 -12.65890 -12.50720 -12.34402 -12.23614 -12.08978 -11.87096 -11.48619 -11.33785 -11.26163 -11.04575 -10.68354 -10.48937 -10.44176 -10.31368 -10.21462 -10.16716 -10.10894 -9.31647 -9.09617 -8.72359 -8.59990 -8.48162 -6.17780 -4.15343 2.82472 3.20651 3.27439 3.35794 3.50360 4.19421 4.32212 4.39534 4.45888 4.54935 4.88921 4.90735 5.02987 5.12651 5.13063 5.20759 5.30107 5.32960 5.43445 5.45649 5.65006 5.72951 5.83178 5.88965 5.92951 5.96456 6.00119 6.01314 6.05024 6.11458 6.25116 6.30666 6.42370 6.47718 6.58591 6.64335 6.72639 6.91358 7.17524 7.38575 7.41410 7.68574 7.85968 8.40400 8.50496 8.87470 9.45897 10.95346 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.022148 B = 0.004533 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.895272 B = 6175.475704 C = 6773.568221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.029 3.971 3 C -0.147 4.147 4 C -0.514 4.514 5 H 0.076 0.924 6 C 0.076 3.924 7 N -0.890 5.890 8 Si 0.885 3.115 9 H -0.286 1.286 10 H -0.305 1.305 11 H -0.249 1.249 12 C 0.141 3.859 13 N -0.718 5.718 14 C 0.479 3.521 15 O -0.542 6.542 16 C 0.094 3.906 17 H 0.120 0.880 18 O -0.538 6.538 19 C -0.114 4.114 20 C -0.121 4.121 21 C -0.117 4.117 22 C -0.120 4.120 23 C -0.120 4.120 24 C -0.108 4.108 25 H 0.021 0.979 26 H 0.056 0.944 27 H 0.047 0.953 28 H 0.053 0.947 29 H 0.042 0.958 30 H 0.029 0.971 31 H 0.265 0.735 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.396 0.604 35 H 0.380 0.620 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.063 0.937 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.674 10.683 18.767 21.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.027 3.973 3 C -0.204 4.204 4 C -0.552 4.552 5 H 0.094 0.906 6 C -0.127 4.127 7 N -0.527 5.527 8 Si 0.718 3.282 9 H -0.214 1.214 10 H -0.234 1.234 11 H -0.175 1.175 12 C 0.019 3.981 13 N -0.370 5.370 14 C 0.264 3.736 15 O -0.420 6.420 16 C 0.031 3.969 17 H 0.137 0.863 18 O -0.343 6.343 19 C -0.133 4.133 20 C -0.158 4.158 21 C -0.154 4.154 22 C -0.157 4.157 23 C -0.157 4.157 24 C -0.146 4.146 25 H 0.040 0.960 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.231 0.769 35 H 0.229 0.771 36 H 0.102 0.898 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.812 9.897 18.728 21.198 hybrid contribution 0.002 1.359 -0.632 1.499 sum -0.810 11.256 18.096 21.327 Atomic orbital electron populations 1.22298 0.97838 0.99862 0.99964 1.18720 0.92511 0.92240 0.93796 1.22357 1.01167 0.98311 0.98542 1.20711 1.34117 1.12341 0.87991 0.90574 1.24970 0.94653 0.97284 0.95782 1.69949 1.48115 1.35902 0.98737 0.87301 0.79330 0.85560 0.76033 1.21372 1.23358 1.17530 1.21521 0.98554 0.95880 0.82164 1.46352 1.52684 1.31740 1.06218 1.21419 0.81236 0.85326 0.85629 1.90700 1.38239 1.26295 1.86737 1.21932 1.00708 0.89943 0.84269 0.86261 1.86538 1.29472 1.76559 1.41730 1.21820 0.96363 0.94974 1.00131 1.21608 0.94137 0.97652 1.02448 1.21489 0.99996 0.95657 0.98283 1.21547 0.95736 1.00203 0.98247 1.21543 0.95505 0.96909 1.01780 1.21493 0.99941 0.95481 0.97650 0.95971 0.92500 0.93378 0.92815 0.94020 0.95239 0.92529 0.92018 0.91874 0.76932 0.77105 0.89778 0.91726 0.91350 0.91780 0.91903 0.92209 0.92045 0.91975 0.92044 0.91827 0.91067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 7.53 37.16 0.28 -2.55 16 2 C 0.03 0.61 0.50 -155.66 -0.08 0.53 16 3 C -0.15 -2.88 7.52 37.16 0.28 -2.60 16 4 C -0.51 -13.64 8.62 -34.44 -0.30 -13.93 16 5 H 0.08 2.23 7.99 -52.48 -0.42 1.81 16 6 C 0.08 2.09 5.32 -17.82 -0.09 1.99 16 7 N -0.89 -26.44 13.96 55.43 0.77 -25.66 16 8 Si 0.89 20.80 22.79 -169.99 -3.87 16.93 16 9 H -0.29 -6.70 7.10 56.52 0.40 -6.30 16 10 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 11 H -0.25 -5.29 4.65 56.52 0.26 -5.03 16 12 C 0.14 2.77 4.49 -4.04 -0.02 2.75 16 13 N -0.72 -11.19 4.97 -60.29 -0.30 -11.49 16 14 C 0.48 7.45 5.90 -10.99 -0.06 7.38 16 15 O -0.54 -10.60 16.32 -14.30 -0.23 -10.83 16 16 C 0.09 1.10 3.19 -27.88 -0.09 1.01 16 17 H 0.12 1.24 8.14 -51.93 -0.42 0.81 16 18 O -0.54 -6.73 12.28 -55.09 -0.68 -7.40 16 19 C -0.11 -1.09 2.04 -90.62 -0.19 -1.27 16 20 C -0.12 -1.22 4.65 -26.73 -0.12 -1.34 16 21 C -0.12 -1.04 5.92 -26.73 -0.16 -1.20 16 22 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 23 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 24 C -0.11 -0.90 5.06 -26.73 -0.14 -1.03 16 25 H 0.02 0.36 7.13 -51.93 -0.37 -0.01 16 26 H 0.06 1.21 4.30 -51.93 -0.22 0.99 16 27 H 0.05 0.96 8.12 -51.93 -0.42 0.53 16 28 H 0.05 1.05 8.14 -51.92 -0.42 0.63 16 29 H 0.04 0.87 2.25 -51.93 -0.12 0.75 16 30 H 0.03 0.47 6.86 -51.93 -0.36 0.11 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.40 5.30 6.04 -40.82 -0.25 5.06 16 35 H 0.38 4.20 7.08 45.56 0.32 4.52 16 36 H 0.08 0.79 7.92 -51.93 -0.41 0.38 16 37 H 0.06 0.61 6.78 -51.93 -0.35 0.26 16 38 H 0.07 0.85 7.22 -51.93 -0.37 0.47 16 39 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.47 8.14 -51.92 -0.42 0.04 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.07 0.63 7.68 -51.93 -0.40 0.23 16 LS Contribution 339.00 15.07 5.11 5.11 Total: -1.00 -30.71 339.00 -7.50 -38.21 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -7.29 Total: 7.58 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -1.00 Total: -12.43 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.47 Total: -37.16 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.91 Total: -18.24 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -3.87 Total: 16.93 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.71 -7.50 -38.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457990801.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.113 kcal (2) G-P(sol) polarization free energy of solvation -30.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds