Wall clock time and date at job start Tue Mar 31 2020 06:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.08996 * 109.48249 * 55.02479 * 3 2 1 5 5 C 1.53094 * 109.47894 * 175.05988 * 3 2 1 6 6 C 1.53179 * 109.16416 * 177.58981 * 5 3 2 7 7 H 1.08994 * 109.61529 * 183.10857 * 6 5 3 8 8 C 1.50698 * 109.54089 * 62.88365 * 6 5 3 9 9 O 1.21277 * 120.00244 * 0.44435 * 8 6 5 10 10 N 1.34783 * 119.99557 * 180.44565 * 8 6 5 11 11 C 1.46506 * 119.99842 * 179.97438 * 10 8 6 12 12 C 1.52992 * 109.47000 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.47547 * 300.00082 * 12 11 10 14 14 C 1.53001 * 109.47192 * 60.00433 * 12 11 10 15 15 C 1.50698 * 109.47040 * 180.02562 * 12 11 10 16 16 H 1.08008 * 120.00112 * 359.97438 * 15 12 11 17 17 C 1.37878 * 120.00235 * 180.02562 * 15 12 11 18 18 N 1.31514 * 120.00042 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 120.00219 * 179.97438 * 17 15 12 20 20 H 1.48496 * 109.47377 * 59.99395 * 19 17 15 21 21 H 1.48502 * 109.47217 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46896 * 299.99275 * 19 17 15 23 23 C 1.53175 * 109.03602 * 303.01818 * 6 5 3 24 24 C 1.53093 * 109.16480 * 56.97807 * 23 6 5 25 25 O 1.42902 * 109.47726 * 294.99547 * 3 2 1 26 26 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 27 27 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 29 29 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 30 30 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 31 31 H 1.09003 * 109.52040 * 297.49250 * 5 3 2 32 32 H 1.09001 * 109.52414 * 57.67844 * 5 3 2 33 33 H 0.96990 * 120.00164 * 359.97438 * 10 8 6 34 34 H 1.08995 * 109.46877 * 300.00337 * 11 10 8 35 35 H 1.09008 * 109.46798 * 59.99895 * 11 10 8 36 36 H 1.09002 * 109.46859 * 59.99783 * 13 12 11 37 37 H 1.08996 * 109.47339 * 180.02562 * 13 12 11 38 38 H 1.09008 * 109.47010 * 300.00458 * 13 12 11 39 39 H 1.08995 * 109.47197 * 59.99238 * 14 12 11 40 40 H 1.09004 * 109.47058 * 180.02562 * 14 12 11 41 41 H 1.09002 * 109.46743 * 299.99378 * 14 12 11 42 42 H 0.96999 * 120.00209 * 180.02562 * 18 17 15 43 43 H 1.09006 * 109.52109 * 297.07774 * 23 6 5 44 44 H 1.08993 * 109.52509 * 176.88776 * 23 6 5 45 45 H 1.08995 * 109.48059 * 182.40854 * 24 23 6 46 46 H 1.08996 * 109.48869 * 62.38270 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6058 1.9816 0.8420 5 6 3.5658 1.4445 0.1243 6 6 4.0735 2.8885 0.0630 7 1 5.1629 2.8950 0.0954 8 6 3.5295 3.6642 1.2349 9 8 2.8133 3.1156 2.0454 10 7 3.8390 4.9677 1.3822 11 6 3.3098 5.7220 2.5212 12 6 3.8094 7.1664 2.4527 13 6 5.3387 7.1799 2.4983 14 6 3.3324 7.8098 1.1491 15 6 3.2656 7.9422 3.6246 16 1 2.6270 7.4539 4.3460 17 6 3.5822 9.2756 3.7755 18 7 4.3593 9.8704 2.8969 19 14 2.9075 10.2374 5.2278 20 1 3.3707 9.6132 6.4931 21 1 3.3925 11.6394 5.1613 22 1 1.4232 10.2240 5.1836 23 6 3.5958 3.5309 -1.2429 24 6 2.0687 3.4483 -1.3145 25 8 1.6621 2.0815 -1.2211 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3635 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8544 0.9971 1.0755 32 1 3.9989 0.8710 -0.6953 33 1 4.4121 5.4063 0.7343 34 1 2.2204 5.7120 2.4890 35 1 3.6500 5.2639 3.4500 36 1 5.7324 6.6187 1.6509 37 1 5.6946 8.2090 2.4500 38 1 5.6785 6.7216 3.4271 39 1 2.2429 7.8001 1.1166 40 1 3.6887 8.8387 1.1001 41 1 3.7262 7.2486 0.3017 42 1 4.5824 10.8084 3.0032 43 1 4.0294 2.9996 -2.0902 44 1 3.9057 4.5755 -1.2696 45 1 1.7261 3.8656 -2.2613 46 1 1.6349 4.0138 -0.4898 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457996595.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:31 Heat of formation + Delta-G solvation = -111.974591 kcal Electronic energy + Delta-G solvation = -23886.316641 eV Core-core repulsion = 20581.908281 eV Total energy + Delta-G solvation = -3304.408360 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.50139 -38.26231 -36.35718 -34.21447 -33.56082 -33.16191 -30.83759 -29.76218 -26.37063 -25.76705 -25.43901 -24.66161 -23.57840 -21.93666 -21.10149 -19.36578 -18.76056 -16.66321 -16.36195 -16.25938 -15.78215 -15.23728 -15.01602 -14.67706 -14.36655 -13.78120 -13.64043 -13.56602 -13.33382 -12.96718 -12.90412 -12.29802 -12.20073 -12.05590 -11.84318 -11.64903 -11.40126 -11.21846 -11.15783 -10.93818 -10.87433 -10.75499 -10.64720 -10.42960 -10.28246 -10.21166 -9.67029 -9.63125 -9.34754 -9.04509 -8.81911 -8.47492 -8.33422 -6.04773 -4.15050 2.98810 3.28257 3.32670 3.35997 3.69137 3.84700 4.37920 4.56027 4.76102 4.78363 4.90139 5.10367 5.19631 5.21980 5.26601 5.38507 5.46951 5.56841 5.62714 5.75351 5.82748 5.85721 5.92878 5.95885 6.01000 6.09060 6.20323 6.25901 6.28987 6.35045 6.46960 6.74567 6.77966 6.89522 6.97763 7.00419 7.31609 7.33344 7.51910 7.66351 7.97377 8.01555 8.12098 8.35408 8.66417 8.85465 9.50943 10.96585 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.029070 B = 0.003827 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.967578 B = 7315.298929 C = 7598.500064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C 0.078 3.922 4 H 0.087 0.913 5 C -0.125 4.125 6 C -0.114 4.114 7 H 0.098 0.902 8 C 0.507 3.493 9 O -0.549 6.549 10 N -0.715 5.715 11 C 0.131 3.869 12 C 0.056 3.944 13 C -0.130 4.130 14 C -0.130 4.130 15 C -0.507 4.507 16 H 0.056 0.944 17 C 0.067 3.933 18 N -0.886 5.886 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.146 4.146 24 C 0.060 3.940 25 O -0.381 6.381 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.397 0.603 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.005 0.995 37 H 0.086 0.914 38 H 0.026 0.974 39 H 0.026 0.974 40 H 0.085 0.915 41 H 0.005 0.995 42 H 0.261 0.739 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.094 0.906 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.430 -13.674 -9.268 16.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C 0.021 3.979 4 H 0.105 0.895 5 C -0.163 4.163 6 C -0.136 4.136 7 H 0.116 0.884 8 C 0.292 3.708 9 O -0.428 6.428 10 N -0.365 5.365 11 C 0.009 3.991 12 C 0.056 3.944 13 C -0.188 4.188 14 C -0.188 4.188 15 C -0.546 4.546 16 H 0.075 0.925 17 C -0.134 4.134 18 N -0.525 5.525 19 Si 0.721 3.279 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.184 4.184 24 C -0.017 4.017 25 O -0.301 6.301 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.232 0.768 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.024 0.976 37 H 0.104 0.896 38 H 0.045 0.955 39 H 0.045 0.955 40 H 0.104 0.896 41 H 0.024 0.976 42 H 0.071 0.929 43 H 0.099 0.901 44 H 0.097 0.903 45 H 0.112 0.888 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.965 -13.945 -8.844 16.542 hybrid contribution 0.266 1.035 0.703 1.279 sum -0.699 -12.910 -8.142 15.279 Atomic orbital electron populations 1.21705 0.95457 1.01075 1.02393 1.21502 0.96626 0.94715 1.02128 1.22437 0.93412 0.94169 0.87918 0.89514 1.21958 0.97036 0.94503 1.02847 1.21431 1.01903 0.96189 0.94068 0.88427 1.20493 0.81103 0.82638 0.86568 1.90613 1.38064 1.69306 1.44861 1.46349 1.51114 1.09936 1.29087 1.21715 0.97628 0.93333 0.86427 1.18344 0.92872 0.88109 0.95106 1.21831 0.97665 1.02832 0.96495 1.21824 0.98497 1.03384 0.95052 1.20948 1.30302 0.94791 1.08551 0.92528 1.24873 0.94854 0.97504 0.96213 1.69788 1.36146 1.11475 1.35057 0.86632 0.79404 0.78851 0.82974 1.20279 1.21305 1.20261 1.22179 0.97749 1.01782 0.96681 1.22524 0.93265 0.83613 1.02266 1.87853 1.78757 1.24298 1.39149 0.92100 0.93118 0.92773 0.91699 0.90814 0.90316 0.90968 0.76759 0.92803 0.92777 0.97571 0.89571 0.95474 0.95462 0.89585 0.97586 0.92930 0.90138 0.90262 0.88788 0.92996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.81 37.16 0.36 -1.26 16 2 C -0.11 -1.26 5.64 -26.73 -0.15 -1.41 16 3 C 0.08 1.04 2.35 -26.68 -0.06 0.98 16 4 H 0.09 1.42 5.82 -51.93 -0.30 1.12 16 5 C -0.13 -1.53 4.56 -26.59 -0.12 -1.65 16 6 C -0.11 -1.43 3.04 -91.59 -0.28 -1.71 16 7 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 8 C 0.51 8.36 5.82 -10.98 -0.06 8.30 16 9 O -0.55 -10.83 13.85 5.56 0.08 -10.76 16 10 N -0.71 -12.25 4.84 -60.29 -0.29 -12.54 16 11 C 0.13 2.74 4.50 -4.04 -0.02 2.72 16 12 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 13 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 14 C -0.13 -2.86 8.08 37.16 0.30 -2.56 16 15 C -0.51 -13.17 8.01 -34.44 -0.28 -13.44 16 16 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 17 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 18 N -0.89 -23.37 9.35 55.43 0.52 -22.85 16 19 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 20 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 21 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 C -0.15 -1.61 5.56 -26.59 -0.15 -1.76 16 24 C 0.06 0.76 6.62 37.21 0.25 1.01 16 25 O -0.38 -5.25 9.94 -35.23 -0.35 -5.60 16 26 H 0.06 0.70 7.82 -51.93 -0.41 0.29 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.99 8.02 -51.93 -0.42 0.57 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.40 6.17 5.55 -40.82 -0.23 5.94 16 34 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.05 1.19 8.14 -51.92 -0.42 0.77 16 36 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 37 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 38 H 0.03 0.60 8.14 -51.92 -0.42 0.17 16 39 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.09 2.11 6.07 -51.93 -0.32 1.79 16 41 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 42 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 43 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.08 0.83 7.50 -51.93 -0.39 0.44 16 45 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.05 0.76 7.38 -51.93 -0.38 0.38 16 LS Contribution 348.28 15.07 5.25 5.25 Total: -1.00 -27.81 348.28 -7.98 -35.79 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -8.08 Total: 5.65 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: -0.08 Total: -10.52 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.23 Total: -35.39 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.27 Total: -16.36 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -27.81 -7.98 -35.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457996595.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.184 kcal (2) G-P(sol) polarization free energy of solvation -27.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds