Wall clock time and date at job start Tue Mar 31 2020 06:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09000 * 109.48006 * 304.98096 * 3 2 1 5 5 C 1.53094 * 109.48445 * 184.94479 * 3 2 1 6 6 C 1.53177 * 109.16451 * 182.40863 * 5 3 2 7 7 H 1.09004 * 109.54101 * 176.84908 * 6 5 3 8 8 C 1.50695 * 109.61633 * 297.07060 * 6 5 3 9 9 O 1.21281 * 120.00076 * 359.59573 * 8 6 5 10 10 N 1.34781 * 119.99989 * 179.60407 * 8 6 5 11 11 C 1.46502 * 119.99987 * 179.97438 * 10 8 6 12 12 C 1.52993 * 109.46958 * 179.97438 * 11 10 8 13 13 C 1.53004 * 109.47350 * 299.99744 * 12 11 10 14 14 C 1.52998 * 109.47336 * 59.99855 * 12 11 10 15 15 C 1.50705 * 109.47271 * 179.97438 * 12 11 10 16 16 H 1.08000 * 119.99788 * 0.02562 * 15 12 11 17 17 C 1.37876 * 120.00109 * 179.97438 * 15 12 11 18 18 N 1.31510 * 120.00194 * 0.02562 * 17 15 12 19 19 Si 1.86805 * 119.99848 * 179.97438 * 17 15 12 20 20 H 1.48504 * 109.46797 * 90.00146 * 19 17 15 21 21 H 1.48492 * 109.47131 * 209.99975 * 19 17 15 22 22 H 1.48497 * 109.47065 * 330.00820 * 19 17 15 23 23 C 1.53179 * 109.03687 * 56.97843 * 6 5 3 24 24 C 1.53093 * 109.16519 * 303.02104 * 23 6 5 25 25 O 1.42900 * 109.41298 * 57.60425 * 24 23 6 26 26 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 27 27 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 31 31 H 1.08996 * 109.51837 * 302.31868 * 5 3 2 32 32 H 1.08996 * 109.52050 * 62.50196 * 5 3 2 33 33 H 0.96995 * 119.99907 * 359.97438 * 10 8 6 34 34 H 1.09004 * 109.47268 * 300.00006 * 11 10 8 35 35 H 1.08999 * 109.46946 * 59.99622 * 11 10 8 36 36 H 1.09006 * 109.47001 * 59.99862 * 13 12 11 37 37 H 1.08997 * 109.47222 * 179.97438 * 13 12 11 38 38 H 1.08999 * 109.47073 * 300.00602 * 13 12 11 39 39 H 1.09004 * 109.47194 * 60.00273 * 14 12 11 40 40 H 1.09005 * 109.46958 * 179.97438 * 14 12 11 41 41 H 1.08996 * 109.47343 * 299.99813 * 14 12 11 42 42 H 0.96997 * 119.99924 * 179.97438 * 18 17 15 43 43 H 1.08993 * 109.52193 * 183.10818 * 23 6 5 44 44 H 1.09005 * 109.52072 * 62.92507 * 23 6 5 45 45 H 1.09003 * 109.47444 * 297.62417 * 24 23 6 46 46 H 1.08992 * 109.47958 * 177.58974 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6057 1.9816 -0.8420 5 6 3.5659 1.4446 -0.1244 6 6 4.0733 2.8886 -0.0631 7 1 5.1629 2.8938 -0.0949 8 6 3.5311 3.6656 -1.2350 9 8 2.8147 3.1182 -2.0462 10 7 3.8424 4.9687 -1.3816 11 6 3.3157 5.7239 -2.5211 12 6 3.8159 7.1681 -2.4508 13 6 3.3368 7.8110 -1.1477 14 6 5.3452 7.1808 -2.4935 15 6 3.2747 7.9448 -3.6234 16 1 2.6373 7.4573 -4.3461 17 6 3.5923 9.2782 -3.7728 18 7 4.3681 9.8720 -2.8924 19 14 2.9220 10.2408 -5.2266 20 1 1.6179 10.8486 -4.8588 21 1 3.8813 11.3126 -5.5953 22 1 2.7336 9.3262 -6.3813 23 6 3.5956 3.5311 1.2428 24 6 2.0686 3.4484 1.3144 25 8 1.6621 2.0816 1.2210 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 3.9989 0.8712 0.6952 32 1 3.8544 0.9972 -1.0755 33 1 4.4151 5.4065 -0.7326 34 1 3.6566 5.2657 -3.4495 35 1 2.2262 5.7152 -2.4904 36 1 3.7286 7.2490 -0.2998 37 1 3.6935 8.8397 -1.0974 38 1 2.2472 7.8019 -1.1172 39 1 5.6866 6.7229 -3.4220 40 1 5.7015 8.2097 -2.4439 41 1 5.7371 6.6189 -1.6457 42 1 4.5918 10.8099 -2.9978 43 1 3.9055 4.5757 1.2694 44 1 4.0293 2.9998 2.0901 45 1 1.6349 4.0138 0.4895 46 1 1.7260 3.8656 2.2612 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457996597.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:35 Heat of formation + Delta-G solvation = -112.070922 kcal Electronic energy + Delta-G solvation = -23884.580556 eV Core-core repulsion = 20580.168019 eV Total energy + Delta-G solvation = -3304.412537 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.49950 -38.26430 -36.35746 -34.21441 -33.56246 -33.16269 -30.83860 -29.76317 -26.37147 -25.76778 -25.44060 -24.66306 -23.57898 -21.93762 -21.10203 -19.36526 -18.76159 -16.66345 -16.36251 -16.26002 -15.78553 -15.23853 -15.01608 -14.67502 -14.36750 -13.78130 -13.64029 -13.56612 -13.33385 -12.96857 -12.90503 -12.29966 -12.20082 -12.05752 -11.84385 -11.65036 -11.40498 -11.22560 -11.15869 -10.94038 -10.89116 -10.72220 -10.64684 -10.43295 -10.28144 -10.21220 -9.67238 -9.63045 -9.34822 -9.04622 -8.81291 -8.47800 -8.33619 -6.05016 -4.15180 2.98804 3.26361 3.33509 3.37200 3.69074 3.84614 4.37843 4.56038 4.76087 4.78257 4.90089 5.10303 5.19562 5.21885 5.26520 5.38458 5.46928 5.56775 5.62676 5.75279 5.82635 5.85680 5.92850 5.95764 6.00937 6.09011 6.20266 6.25834 6.28947 6.34960 6.46908 6.74536 6.77907 6.89442 6.97685 7.00392 7.31581 7.33322 7.51826 7.66408 7.97285 8.01549 8.12068 8.35310 8.66416 8.85599 9.50905 10.96383 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.029097 B = 0.003824 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.075347 B = 7319.477925 C = 7602.003637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C 0.078 3.922 4 H 0.087 0.913 5 C -0.125 4.125 6 C -0.114 4.114 7 H 0.098 0.902 8 C 0.507 3.493 9 O -0.549 6.549 10 N -0.715 5.715 11 C 0.131 3.869 12 C 0.056 3.944 13 C -0.130 4.130 14 C -0.131 4.131 15 C -0.507 4.507 16 H 0.057 0.943 17 C 0.067 3.933 18 N -0.886 5.886 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.146 4.146 24 C 0.060 3.940 25 O -0.381 6.381 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.397 0.603 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.005 0.995 37 H 0.085 0.915 38 H 0.026 0.974 39 H 0.026 0.974 40 H 0.086 0.914 41 H 0.005 0.995 42 H 0.260 0.740 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.052 0.948 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.451 -13.701 9.258 16.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C 0.021 3.979 4 H 0.105 0.895 5 C -0.163 4.163 6 C -0.136 4.136 7 H 0.116 0.884 8 C 0.292 3.708 9 O -0.428 6.428 10 N -0.365 5.365 11 C 0.009 3.991 12 C 0.055 3.945 13 C -0.188 4.188 14 C -0.188 4.188 15 C -0.545 4.545 16 H 0.075 0.925 17 C -0.135 4.135 18 N -0.525 5.525 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.184 4.184 24 C -0.017 4.017 25 O -0.301 6.301 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.232 0.768 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.024 0.976 37 H 0.104 0.896 38 H 0.045 0.955 39 H 0.045 0.955 40 H 0.104 0.896 41 H 0.024 0.976 42 H 0.070 0.930 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.070 0.930 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.984 -13.977 8.829 16.561 hybrid contribution 0.267 1.049 -0.689 1.283 sum -0.718 -12.928 8.141 15.294 Atomic orbital electron populations 1.21706 0.95455 1.01076 1.02393 1.21503 0.96629 0.94712 1.02131 1.22434 0.93414 0.94166 0.87913 0.89531 1.21956 0.97036 0.94503 1.02849 1.21429 1.01911 0.96180 0.94070 0.88435 1.20490 0.81095 0.82639 0.86573 1.90615 1.38046 1.69367 1.44820 1.46348 1.51160 1.09961 1.29015 1.21714 0.97661 0.93311 0.86413 1.18352 0.92876 0.88121 0.95120 1.21825 0.98499 1.03378 0.95055 1.21829 0.97668 1.02830 0.96497 1.20984 1.30297 0.94777 1.08449 0.92474 1.24875 0.94845 0.97525 0.96225 1.69796 1.36195 1.11414 1.35048 0.86574 0.78725 0.79686 0.82917 1.20691 1.21249 1.19900 1.22180 0.97753 1.01783 0.96680 1.22523 0.93265 0.83611 1.02264 1.87850 1.78756 1.24296 1.39155 0.92105 0.92765 0.93117 0.91697 0.90812 0.90964 0.90316 0.76758 0.92769 0.92809 0.97585 0.89585 0.95466 0.95468 0.89572 0.97567 0.92990 0.90262 0.90139 0.92998 0.88784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.81 37.16 0.36 -1.25 16 2 C -0.11 -1.26 5.64 -26.73 -0.15 -1.41 16 3 C 0.08 1.05 2.36 -26.68 -0.06 0.98 16 4 H 0.09 1.42 5.83 -51.93 -0.30 1.12 16 5 C -0.13 -1.53 4.56 -26.59 -0.12 -1.65 16 6 C -0.11 -1.43 3.04 -91.59 -0.28 -1.71 16 7 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 8 C 0.51 8.36 5.82 -10.99 -0.06 8.30 16 9 O -0.55 -10.84 13.87 5.56 0.08 -10.76 16 10 N -0.71 -12.24 4.84 -60.30 -0.29 -12.53 16 11 C 0.13 2.74 4.50 -4.04 -0.02 2.72 16 12 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 13 C -0.13 -2.86 8.08 37.16 0.30 -2.56 16 14 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 15 C -0.51 -13.14 8.01 -34.44 -0.28 -13.42 16 16 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 17 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 18 N -0.89 -23.36 9.35 55.43 0.52 -22.84 16 19 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 C -0.15 -1.61 5.56 -26.59 -0.15 -1.76 16 24 C 0.06 0.76 6.62 37.21 0.25 1.01 16 25 O -0.38 -5.25 9.94 -35.23 -0.35 -5.60 16 26 H 0.06 0.70 7.82 -51.93 -0.41 0.29 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.99 8.02 -51.93 -0.42 0.57 16 33 H 0.40 6.17 5.55 -40.82 -0.23 5.94 16 34 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 37 H 0.09 2.11 6.07 -51.93 -0.32 1.79 16 38 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 41 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 42 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 43 H 0.08 0.83 7.49 -51.93 -0.39 0.44 16 44 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.05 0.76 7.38 -51.93 -0.38 0.38 16 46 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 348.30 15.07 5.25 5.25 Total: -1.00 -27.83 348.30 -7.98 -35.81 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -8.08 Total: 5.61 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: -0.08 Total: -10.50 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: 0.23 Total: -35.37 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.27 Total: -16.36 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -27.83 -7.98 -35.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457996597.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.260 kcal (2) G-P(sol) polarization free energy of solvation -27.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds