Wall clock time and date at job start Tue Mar 31 2020 06:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47100 * 2 1 4 4 H 1.09005 * 109.47645 * 54.97516 * 3 2 1 5 5 C 1.53088 * 109.47856 * 174.99449 * 3 2 1 6 6 C 1.53174 * 109.16292 * 177.59034 * 5 3 2 7 7 H 1.09004 * 109.54418 * 62.97669 * 6 5 3 8 8 C 1.50701 * 109.54684 * 183.15714 * 6 5 3 9 9 O 1.21282 * 119.99965 * 359.81747 * 8 6 5 10 10 N 1.34780 * 120.00188 * 179.82881 * 8 6 5 11 11 C 1.46496 * 119.99698 * 179.97438 * 10 8 6 12 12 C 1.53002 * 109.46936 * 179.97438 * 11 10 8 13 13 C 1.53003 * 109.47038 * 59.99905 * 12 11 10 14 14 C 1.52999 * 109.47226 * 300.00173 * 12 11 10 15 15 C 1.50701 * 109.47426 * 180.02562 * 12 11 10 16 16 H 1.08003 * 119.99811 * 4.91297 * 15 12 11 17 17 C 1.37872 * 120.00421 * 184.92068 * 15 12 11 18 18 N 1.31513 * 119.99820 * 351.63390 * 17 15 12 19 19 Si 1.86802 * 120.00166 * 171.63304 * 17 15 12 20 20 H 1.48495 * 109.46976 * 60.00000 * 19 17 15 21 21 H 1.48501 * 109.46858 * 299.99894 * 19 17 15 22 22 H 1.48507 * 109.46681 * 180.02562 * 19 17 15 23 23 C 1.53184 * 109.11251 * 303.06653 * 6 5 3 24 24 C 1.53100 * 109.15195 * 56.84568 * 23 6 5 25 25 O 1.42902 * 109.48053 * 294.94224 * 3 2 1 26 26 H 1.09000 * 109.46920 * 60.00264 * 1 2 3 27 27 H 1.09000 * 109.47013 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47173 * 300.00104 * 1 2 3 29 29 H 1.08997 * 109.47173 * 239.99896 * 2 1 3 30 30 H 1.09000 * 109.46920 * 119.99736 * 2 1 3 31 31 H 1.09007 * 109.52321 * 57.69209 * 5 3 2 32 32 H 1.08996 * 109.52586 * 297.49896 * 5 3 2 33 33 H 0.96995 * 119.99744 * 359.97438 * 10 8 6 34 34 H 1.09001 * 109.47163 * 59.99776 * 11 10 8 35 35 H 1.09000 * 109.47330 * 299.99756 * 11 10 8 36 36 H 1.09002 * 109.46791 * 172.91550 * 13 12 11 37 37 H 1.08999 * 109.46907 * 292.91754 * 13 12 11 38 38 H 1.09002 * 109.46507 * 52.92038 * 13 12 11 39 39 H 1.09002 * 109.47064 * 307.35876 * 14 12 11 40 40 H 1.09003 * 109.47312 * 67.35679 * 14 12 11 41 41 H 1.08999 * 109.47661 * 187.35761 * 14 12 11 42 42 H 0.97003 * 120.00052 * 5.71936 * 18 17 15 43 43 H 1.08997 * 109.52452 * 176.83925 * 23 6 5 44 44 H 1.08998 * 109.51991 * 297.03360 * 23 6 5 45 45 H 1.09009 * 109.48151 * 182.49893 * 24 23 6 46 46 H 1.09004 * 109.41959 * 62.51646 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6051 1.9818 0.8416 5 6 3.5657 1.4445 0.1259 6 6 4.0734 2.8884 0.0646 7 1 3.6804 3.4494 0.9126 8 6 5.5797 2.8956 0.1099 9 8 6.1891 1.8499 0.1873 10 7 6.2497 4.0642 0.0647 11 6 7.7140 4.0712 0.1092 12 6 8.2194 5.5138 0.0428 13 6 7.6691 6.3022 1.2330 14 6 7.7457 6.1607 -1.2602 15 6 9.7257 5.5210 0.0881 16 1 10.2707 4.5886 0.0771 17 6 10.4080 6.7177 0.1436 18 7 9.7599 7.8519 -0.0083 19 14 12.2532 6.7282 0.4346 20 1 12.9303 5.9794 -0.6543 21 1 12.5522 6.0839 1.7387 22 1 12.7436 8.1299 0.4515 23 6 3.5970 3.5326 -1.2410 24 6 2.0701 3.4479 -1.3150 25 8 1.6633 2.0812 -1.2216 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.9996 0.8709 -0.6932 32 1 3.8533 0.9974 1.0774 33 1 5.7623 4.9005 0.0026 34 1 8.1060 3.5098 -0.7389 35 1 8.0514 3.6099 1.0374 36 1 8.1270 7.2911 1.2567 37 1 6.5885 6.4044 1.1328 38 1 7.8999 5.7727 2.1574 39 1 8.0263 5.5285 -2.1027 40 1 6.6619 6.2743 -1.2365 41 1 8.2113 7.1401 -1.3700 42 1 8.7922 7.8522 -0.0764 43 1 3.9069 4.5773 -1.2660 44 1 4.0314 3.0023 -2.0884 45 1 1.7283 3.8649 -2.2624 46 1 1.6354 4.0137 -0.4909 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457996598.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:38 Heat of formation + Delta-G solvation = -109.690727 kcal Electronic energy + Delta-G solvation = -23347.122392 eV Core-core repulsion = 20042.813068 eV Total energy + Delta-G solvation = -3304.309324 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.31199 -38.76907 -36.82319 -34.32865 -33.76097 -33.46064 -30.55741 -29.96705 -26.73837 -26.09932 -25.63961 -24.36354 -23.60926 -21.97398 -20.86335 -19.75546 -18.94545 -17.45640 -16.65853 -16.43177 -15.95290 -15.34464 -15.09501 -14.72918 -14.18439 -13.92538 -13.77208 -13.75130 -13.57210 -13.22749 -12.74681 -12.73327 -12.52551 -12.02784 -11.98072 -11.58515 -11.48285 -11.36112 -11.30626 -11.11096 -10.96940 -10.78888 -10.66047 -10.65149 -10.50102 -10.11218 -9.93420 -9.87829 -9.59459 -9.31397 -8.58931 -8.48960 -8.23918 -6.30035 -4.14336 2.93701 3.41382 3.42970 3.53634 3.61212 3.64174 4.42950 4.48518 4.63309 4.66955 4.72995 4.89854 4.91293 5.11798 5.17267 5.24318 5.28561 5.33961 5.46777 5.51409 5.55131 5.69484 5.74124 5.82965 5.90810 5.97281 5.98078 6.08967 6.12947 6.19460 6.21374 6.51065 6.58172 6.66438 6.74590 6.84798 7.02702 7.05578 7.06172 7.45593 7.61670 7.95308 8.15576 8.36252 8.59975 8.80406 9.56078 10.96023 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.042031 B = 0.003223 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.008739 B = 8684.396096 C = 9048.329468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C 0.090 3.910 4 H 0.057 0.943 5 C -0.128 4.128 6 C -0.110 4.110 7 H 0.094 0.906 8 C 0.510 3.490 9 O -0.549 6.549 10 N -0.718 5.718 11 C 0.139 3.861 12 C 0.042 3.958 13 C -0.146 4.146 14 C -0.144 4.144 15 C -0.587 4.587 16 H 0.052 0.948 17 C 0.027 3.973 18 N -0.916 5.916 19 Si 1.064 2.936 20 H -0.288 1.288 21 H -0.288 1.288 22 H -0.283 1.283 23 C -0.148 4.148 24 C 0.065 3.935 25 O -0.378 6.378 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.396 0.604 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.016 0.984 38 H 0.037 0.963 39 H 0.036 0.964 40 H 0.014 0.986 41 H 0.071 0.929 42 H 0.280 0.720 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.097 0.903 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.595 -8.310 -0.035 19.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C 0.032 3.968 4 H 0.075 0.925 5 C -0.166 4.166 6 C -0.132 4.132 7 H 0.112 0.888 8 C 0.295 3.705 9 O -0.427 6.427 10 N -0.368 5.368 11 C 0.017 3.983 12 C 0.041 3.959 13 C -0.204 4.204 14 C -0.202 4.202 15 C -0.626 4.626 16 H 0.070 0.930 17 C -0.177 4.177 18 N -0.556 5.556 19 Si 0.893 3.107 20 H -0.215 1.215 21 H -0.214 1.214 22 H -0.208 1.208 23 C -0.186 4.186 24 C -0.012 4.012 25 O -0.297 6.297 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.231 0.769 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.035 0.965 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.033 0.967 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.097 0.903 45 H 0.115 0.885 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.913 -8.142 -0.035 17.875 hybrid contribution -1.269 -0.380 0.133 1.331 sum -17.182 -8.522 0.098 19.180 Atomic orbital electron populations 1.21719 0.95320 1.01436 1.02173 1.21540 0.96511 0.94339 1.02983 1.22194 0.93472 0.94118 0.86971 0.92465 1.22022 0.95048 0.95215 1.04310 1.21380 0.93282 0.98830 0.99677 0.88833 1.20441 0.89341 0.84141 0.76602 1.90668 1.70111 1.31813 1.50156 1.46316 1.09174 1.08008 1.73348 1.21596 0.76376 0.99673 1.00679 1.18515 0.96533 0.89092 0.91762 1.22046 0.96470 1.03020 0.98851 1.22084 0.96414 1.02798 0.98881 1.21747 0.89716 0.95315 1.55798 0.92993 1.25672 1.06670 0.92064 0.93339 1.70883 1.11332 1.28154 1.45272 0.83607 0.74561 0.75926 0.76620 1.21477 1.21427 1.20825 1.22204 0.97265 1.01794 0.97330 1.22539 0.93132 0.83236 1.02262 1.87919 1.78470 1.24620 1.38678 0.91968 0.92841 0.93019 0.90981 0.90534 0.90133 0.90275 0.76941 0.92638 0.92552 0.90841 0.96536 0.94424 0.94498 0.96685 0.91039 0.90350 0.90201 0.90341 0.88531 0.93077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.81 37.16 0.36 -0.81 16 2 C -0.12 -1.03 5.64 -26.73 -0.15 -1.18 16 3 C 0.09 0.91 2.64 -26.68 -0.07 0.84 16 4 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 5 C -0.13 -1.53 4.02 -26.60 -0.11 -1.64 16 6 C -0.11 -1.36 2.61 -91.59 -0.24 -1.60 16 7 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 8 C 0.51 8.59 7.16 -10.98 -0.08 8.51 16 9 O -0.55 -11.36 15.97 5.56 0.09 -11.27 16 10 N -0.72 -12.39 4.95 -60.29 -0.30 -12.69 16 11 C 0.14 2.95 4.50 -4.04 -0.02 2.93 16 12 C 0.04 0.96 0.50 -155.66 -0.08 0.88 16 13 C -0.15 -3.19 7.85 37.16 0.29 -2.90 16 14 C -0.14 -3.14 7.91 37.16 0.29 -2.85 16 15 C -0.59 -15.62 8.00 -34.44 -0.28 -15.89 16 16 H 0.05 1.41 7.76 -52.48 -0.41 1.00 16 17 C 0.03 0.72 5.07 -17.82 -0.09 0.63 16 18 N -0.92 -25.65 12.17 55.43 0.67 -24.98 16 19 Si 1.06 24.38 29.91 -169.99 -5.08 19.29 16 20 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.38 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 C -0.15 -1.60 5.30 -26.58 -0.14 -1.74 16 24 C 0.07 0.61 6.84 37.21 0.25 0.86 16 25 O -0.38 -4.20 9.95 -35.23 -0.35 -4.55 16 26 H 0.06 0.54 7.82 -51.93 -0.41 0.13 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 1.11 8.03 -51.92 -0.42 0.69 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.40 6.06 5.79 -40.82 -0.24 5.82 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.07 1.78 5.16 -51.93 -0.27 1.51 16 37 H 0.02 0.30 7.04 -51.93 -0.37 -0.07 16 38 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.01 0.27 7.05 -51.93 -0.37 -0.10 16 41 H 0.07 1.73 5.30 -51.93 -0.28 1.46 16 42 H 0.28 7.56 3.59 -40.82 -0.15 7.41 16 43 H 0.08 0.79 7.68 -51.93 -0.40 0.39 16 44 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 46 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 351.33 15.07 5.29 5.29 Total: -1.00 -30.12 351.33 -7.72 -37.84 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -8.00 Total: 5.04 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: -0.04 Total: -13.97 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.38 Total: -37.67 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.26 Total: -15.82 kcal Atomic # 14 Polarization: 24.38 SS G_CDS: -5.08 Total: 19.29 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.12 -7.72 -37.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457996598.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.848 kcal (2) G-P(sol) polarization free energy of solvation -30.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds