Wall clock time and date at job start Tue Mar 31 2020 06:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47029 * 2 1 4 4 H 1.09006 * 109.48468 * 305.03023 * 3 2 1 5 5 C 1.53090 * 109.47751 * 185.00297 * 3 2 1 6 6 C 1.53180 * 109.16077 * 182.40829 * 5 3 2 7 7 H 1.09001 * 109.54345 * 297.02239 * 6 5 3 8 8 C 1.50703 * 109.54465 * 176.84591 * 6 5 3 9 9 O 1.21280 * 119.99698 * 359.97438 * 8 6 5 10 10 N 1.34776 * 119.99823 * 179.97438 * 8 6 5 11 11 C 1.46502 * 119.99753 * 179.72812 * 10 8 6 12 12 C 1.52994 * 109.46980 * 180.27478 * 11 10 8 13 13 C 1.52999 * 109.47341 * 299.99351 * 12 11 10 14 14 C 1.52998 * 109.47569 * 59.99800 * 12 11 10 15 15 C 1.50710 * 109.47130 * 179.97438 * 12 11 10 16 16 H 1.07999 * 119.99398 * 357.00733 * 15 12 11 17 17 C 1.37867 * 120.00233 * 177.00318 * 15 12 11 18 18 N 1.31520 * 119.99976 * 5.54411 * 17 15 12 19 19 Si 1.86802 * 120.00374 * 185.54366 * 17 15 12 20 20 H 1.48501 * 109.46905 * 85.00107 * 19 17 15 21 21 H 1.48493 * 109.47343 * 204.99996 * 19 17 15 22 22 H 1.48494 * 109.46710 * 325.00288 * 19 17 15 23 23 C 1.53175 * 109.03949 * 56.97623 * 6 5 3 24 24 C 1.53089 * 109.16381 * 303.02286 * 23 6 5 25 25 O 1.42897 * 109.48221 * 65.05640 * 3 2 1 26 26 H 1.09003 * 109.47187 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47155 * 299.99700 * 1 2 3 28 28 H 1.08999 * 109.47292 * 59.99880 * 1 2 3 29 29 H 1.08998 * 109.47475 * 239.99916 * 2 1 3 30 30 H 1.08998 * 109.46921 * 119.99725 * 2 1 3 31 31 H 1.08998 * 109.52567 * 62.50188 * 5 3 2 32 32 H 1.08999 * 109.57278 * 302.34003 * 5 3 2 33 33 H 0.96995 * 120.00454 * 359.97438 * 10 8 6 34 34 H 1.09004 * 109.46430 * 300.27208 * 11 10 8 35 35 H 1.08997 * 109.47510 * 60.26880 * 11 10 8 36 36 H 1.09000 * 109.46892 * 53.93190 * 13 12 11 37 37 H 1.08996 * 109.47590 * 173.93467 * 13 12 11 38 38 H 1.08997 * 109.47014 * 293.93990 * 13 12 11 39 39 H 1.09004 * 109.47301 * 59.99376 * 14 12 11 40 40 H 1.08996 * 109.47535 * 179.97438 * 14 12 11 41 41 H 1.09004 * 109.46973 * 299.99650 * 14 12 11 42 42 H 0.96998 * 119.99805 * 179.97438 * 18 17 15 43 43 H 1.09000 * 109.52333 * 62.92579 * 23 6 5 44 44 H 1.08995 * 109.52787 * 183.11360 * 23 6 5 45 45 H 1.09004 * 109.48411 * 297.62542 * 24 23 6 46 46 H 1.09006 * 109.49299 * 177.59587 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6050 1.9820 -0.8415 5 6 3.5657 1.4446 -0.1259 6 6 4.0733 2.8885 -0.0646 7 1 3.6803 3.4495 -0.9126 8 6 5.5796 2.8957 -0.1099 9 8 6.1891 1.8498 -0.1834 10 7 6.2494 4.0646 -0.0687 11 6 7.7139 4.0712 -0.1067 12 6 8.2192 5.5138 -0.0405 13 6 7.6746 6.3003 -1.2345 14 6 7.7398 6.1631 1.2594 15 6 9.7258 5.5207 -0.0789 16 1 10.2697 4.5878 -0.0953 17 6 10.4096 6.7178 -0.0933 18 7 9.7545 7.8509 0.0364 19 14 12.2664 6.7305 -0.2971 20 1 12.6061 6.6824 -1.7419 21 1 12.8215 7.9712 0.3009 22 1 12.8475 5.5480 0.3877 23 6 3.5969 3.5307 1.2419 24 6 2.0699 3.4480 1.3149 25 8 1.6632 2.0812 1.2215 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8533 0.9974 -1.0774 32 1 4.0004 0.8707 0.6925 33 1 5.7620 4.9011 -0.0102 34 1 8.1019 3.5109 0.7440 35 1 8.0555 3.6087 -1.0326 36 1 6.5892 6.2055 -1.2674 37 1 7.9445 7.3513 -1.1310 38 1 8.1019 5.9044 -2.1557 39 1 8.1278 5.6027 2.1101 40 1 8.1001 7.1906 1.3067 41 1 6.6501 6.1581 1.2876 42 1 10.2357 8.6930 0.0266 43 1 4.0313 2.9992 2.0886 44 1 3.9068 4.5753 1.2686 45 1 1.6354 4.0136 0.4907 46 1 1.7280 3.8651 2.2621 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457996599.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:42 Heat of formation + Delta-G solvation = -115.935651 kcal Electronic energy + Delta-G solvation = -23291.150844 eV Core-core repulsion = 19986.570720 eV Total energy + Delta-G solvation = -3304.580124 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.24271 -38.67325 -36.39220 -34.27344 -33.68601 -33.17346 -30.82936 -29.92738 -26.62622 -25.76279 -25.44815 -24.63294 -23.62425 -21.94803 -20.81373 -19.64006 -18.79083 -17.10178 -16.58632 -16.04904 -15.70947 -15.13918 -15.08368 -14.74468 -14.46315 -14.07683 -13.88424 -13.63763 -13.30616 -13.06722 -12.90624 -12.52280 -12.21465 -11.97706 -11.92938 -11.45556 -11.42785 -11.28273 -11.20682 -11.06990 -10.88580 -10.74470 -10.70798 -10.45392 -10.40763 -10.23305 -9.81978 -9.65510 -9.48083 -9.14088 -8.81243 -8.46660 -8.31990 -6.04822 -4.13674 3.02102 3.27477 3.33993 3.37333 3.59744 3.71732 4.38423 4.48632 4.69257 4.73396 4.79059 4.93927 4.96074 5.15917 5.22128 5.22421 5.29458 5.40681 5.52701 5.56145 5.60010 5.74945 5.77278 5.88082 5.95077 6.03115 6.12091 6.21368 6.25242 6.30833 6.48449 6.76314 6.78181 6.90311 6.98798 7.01652 7.10639 7.32550 7.52841 7.67766 7.96686 8.03495 8.13007 8.35998 8.69216 8.86863 9.51943 10.97263 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.042089 B = 0.003211 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.093697 B = 8717.346804 C = 9075.260414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C 0.090 3.910 4 H 0.057 0.943 5 C -0.128 4.128 6 C -0.110 4.110 7 H 0.093 0.907 8 C 0.509 3.491 9 O -0.551 6.551 10 N -0.716 5.716 11 C 0.131 3.869 12 C 0.056 3.944 13 C -0.129 4.129 14 C -0.130 4.130 15 C -0.508 4.508 16 H 0.057 0.943 17 C 0.067 3.933 18 N -0.886 5.886 19 Si 0.893 3.107 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.148 4.148 24 C 0.065 3.935 25 O -0.378 6.378 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.397 0.603 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.006 0.994 37 H 0.081 0.919 38 H 0.029 0.971 39 H 0.026 0.974 40 H 0.086 0.914 41 H 0.005 0.995 42 H 0.260 0.740 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.051 0.949 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.396 -7.488 0.154 18.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C 0.033 3.967 4 H 0.075 0.925 5 C -0.166 4.166 6 C -0.132 4.132 7 H 0.111 0.889 8 C 0.294 3.706 9 O -0.430 6.430 10 N -0.366 5.366 11 C 0.009 3.991 12 C 0.056 3.944 13 C -0.187 4.187 14 C -0.188 4.188 15 C -0.546 4.546 16 H 0.075 0.925 17 C -0.134 4.134 18 N -0.524 5.524 19 Si 0.721 3.279 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.186 4.186 24 C -0.012 4.012 25 O -0.298 6.298 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.232 0.768 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.025 0.975 37 H 0.100 0.900 38 H 0.048 0.952 39 H 0.045 0.955 40 H 0.104 0.896 41 H 0.024 0.976 42 H 0.070 0.930 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.069 0.931 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.988 -8.120 0.253 18.831 hybrid contribution 1.103 0.740 -0.345 1.372 sum -15.885 -7.380 -0.092 17.516 Atomic orbital electron populations 1.21719 0.95355 1.01402 1.02168 1.21538 0.96478 0.94391 1.02962 1.22191 0.93521 0.94065 0.86971 0.92483 1.22020 0.94987 0.95303 1.04279 1.21378 0.93420 0.98738 0.99646 0.88853 1.20423 0.89290 0.84203 0.76682 1.90661 1.70108 1.31848 1.50373 1.46332 1.09237 1.07945 1.73089 1.21702 0.76436 1.00554 1.00425 1.18349 0.95453 0.87869 0.92776 1.21806 0.94844 1.04086 0.97927 1.21847 0.95085 1.04224 0.97604 1.20972 0.90033 0.92640 1.50999 0.92459 1.24874 0.98280 0.95550 0.94718 1.69824 1.35251 0.97414 1.49913 0.86594 0.85550 0.77414 0.78365 1.20616 1.21310 1.19966 1.22199 0.97163 1.01895 0.97325 1.22544 0.93209 0.83188 1.02234 1.87913 1.78504 1.24658 1.38676 0.92876 0.91972 0.93027 0.90553 0.90996 0.90323 0.90150 0.76784 0.92799 0.92771 0.97520 0.89985 0.95190 0.95459 0.89568 0.97632 0.92996 0.90344 0.90124 0.93075 0.88560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.81 37.16 0.36 -0.83 16 2 C -0.12 -1.05 5.64 -26.73 -0.15 -1.20 16 3 C 0.09 0.93 2.64 -26.68 -0.07 0.85 16 4 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 5 C -0.13 -1.55 4.02 -26.59 -0.11 -1.66 16 6 C -0.11 -1.39 2.61 -91.59 -0.24 -1.62 16 7 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 8 C 0.51 8.68 7.16 -10.98 -0.08 8.60 16 9 O -0.55 -11.48 15.97 5.56 0.09 -11.40 16 10 N -0.72 -12.53 4.81 -60.29 -0.29 -12.82 16 11 C 0.13 2.79 4.50 -4.04 -0.02 2.77 16 12 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 13 C -0.13 -2.87 8.03 37.16 0.30 -2.57 16 14 C -0.13 -2.89 8.10 37.16 0.30 -2.59 16 15 C -0.51 -13.29 8.01 -34.44 -0.28 -13.56 16 16 H 0.06 1.52 7.75 -52.49 -0.41 1.11 16 17 C 0.07 1.76 5.13 -17.82 -0.09 1.67 16 18 N -0.89 -23.50 9.45 55.43 0.52 -22.98 16 19 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 C -0.15 -1.63 5.30 -26.60 -0.14 -1.77 16 24 C 0.07 0.62 6.84 37.20 0.25 0.87 16 25 O -0.38 -4.27 9.94 -35.23 -0.35 -4.62 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.55 7.83 -51.93 -0.41 0.14 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.08 1.12 8.02 -51.93 -0.42 0.70 16 33 H 0.40 6.23 5.68 -40.82 -0.23 6.00 16 34 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.01 0.11 6.71 -51.93 -0.35 -0.23 16 37 H 0.08 2.00 6.25 -51.93 -0.32 1.68 16 38 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 2.13 6.10 -51.93 -0.32 1.81 16 41 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 42 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 43 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.08 0.82 7.70 -51.93 -0.40 0.42 16 45 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 354.54 15.07 5.34 5.34 Total: -1.00 -28.70 354.54 -8.00 -36.70 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -8.26 Total: 3.92 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: -0.03 Total: -9.83 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: 0.23 Total: -35.80 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.26 Total: -16.01 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.70 -8.00 -36.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457996599.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.234 kcal (2) G-P(sol) polarization free energy of solvation -28.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds