Wall clock time and date at job start Tue Mar 31 2020 05:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00236 * 2 1 4 4 C 1.50704 * 109.47194 * 302.97581 * 3 2 1 5 5 O 1.21281 * 120.00072 * 143.41509 * 4 3 2 6 6 N 1.34781 * 119.99510 * 323.41093 * 4 3 2 7 7 C 1.46505 * 119.99738 * 175.09977 * 6 4 3 8 8 C 1.52996 * 109.47151 * 179.97438 * 7 6 4 9 9 C 1.52991 * 109.47247 * 300.00291 * 8 7 6 10 10 C 1.52999 * 109.46758 * 60.00169 * 8 7 6 11 11 C 1.50701 * 109.46899 * 179.97438 * 8 7 6 12 12 H 1.07995 * 120.00113 * 0.02562 * 11 8 7 13 13 C 1.37875 * 119.99682 * 179.97438 * 11 8 7 14 14 N 1.31515 * 120.00285 * 0.02562 * 13 11 8 15 15 Si 1.86796 * 120.00071 * 180.02562 * 13 11 8 16 16 H 1.48506 * 109.46807 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47285 * 120.00217 * 15 13 11 18 18 H 1.48502 * 109.47318 * 240.00673 * 15 13 11 19 19 C 1.52993 * 109.47297 * 182.96773 * 3 2 1 20 20 C 1.52994 * 109.47606 * 300.00354 * 19 3 2 21 21 C 1.52998 * 109.47208 * 300.00059 * 20 19 3 22 22 C 1.53005 * 109.47057 * 59.99275 * 21 20 19 23 23 C 1.52994 * 109.47703 * 300.00421 * 22 21 20 24 24 H 1.09000 * 109.47213 * 294.94622 * 1 2 3 25 25 H 1.08997 * 109.47293 * 54.94068 * 1 2 3 26 26 H 1.08995 * 109.47364 * 174.94762 * 1 2 3 27 27 H 0.96996 * 120.00448 * 355.10363 * 6 4 3 28 28 H 1.08999 * 109.46797 * 300.00434 * 7 6 4 29 29 H 1.09005 * 109.46580 * 59.99842 * 7 6 4 30 30 H 1.09002 * 109.47494 * 59.99565 * 9 8 7 31 31 H 1.09001 * 109.47103 * 179.97438 * 9 8 7 32 32 H 1.09005 * 109.47442 * 300.00039 * 9 8 7 33 33 H 1.08998 * 109.47226 * 60.00265 * 10 8 7 34 34 H 1.09001 * 109.46922 * 179.97438 * 10 8 7 35 35 H 1.08997 * 109.47555 * 299.99838 * 10 8 7 36 36 H 0.96995 * 120.00348 * 179.97438 * 14 13 11 37 37 H 1.09004 * 109.46711 * 60.00729 * 19 3 2 38 38 H 1.09008 * 109.47270 * 180.02562 * 19 3 2 39 39 H 1.08994 * 109.47508 * 179.97438 * 20 19 3 40 40 H 1.09008 * 109.46906 * 59.99654 * 20 19 3 41 41 H 1.08998 * 109.46948 * 300.00178 * 21 20 19 42 42 H 1.09000 * 109.47397 * 179.97438 * 21 20 19 43 43 H 1.09004 * 109.46883 * 179.97438 * 22 21 20 44 44 H 1.09007 * 109.46590 * 60.00784 * 22 21 20 45 45 H 1.09008 * 109.46906 * 300.00076 * 23 22 21 46 46 H 1.08994 * 109.47508 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5082 2.0789 -1.1919 5 8 1.2896 3.2679 -1.0950 6 7 1.3021 1.4493 -2.3657 7 6 0.7132 2.1760 -3.4932 8 6 0.5888 1.2380 -4.6955 9 6 1.9758 0.7251 -5.0878 10 6 -0.3076 0.0539 -4.3278 11 6 -0.0175 1.9854 -5.8551 12 1 -0.2869 3.0255 -5.7457 13 6 -0.2275 1.3416 -7.0561 14 7 0.1009 0.0751 -7.1896 15 14 -0.9784 2.2681 -8.4938 16 1 -1.2557 3.6697 -8.0888 17 1 -0.0300 2.2619 -9.6364 18 1 -2.2463 1.6096 -8.8992 19 6 3.5337 1.1854 -0.0747 20 6 4.0434 0.4002 1.1354 21 6 3.6520 1.1326 2.4204 22 6 2.1285 1.2527 2.4951 23 6 1.6188 2.0379 1.2850 24 1 -0.3633 0.4334 0.9318 25 1 -0.3634 0.5903 -0.8412 26 1 -0.3634 -1.0236 -0.0905 27 1 1.5436 0.5150 -2.4639 28 1 -0.2748 2.5418 -3.2135 29 1 1.3521 3.0194 -3.7553 30 1 2.4140 0.1844 -4.2489 31 1 1.8872 0.0565 -5.9441 32 1 2.6145 1.5687 -5.3497 33 1 -1.2957 0.4192 -4.0484 34 1 -0.3965 -0.6142 -5.1845 35 1 0.1305 -0.4869 -3.4889 36 1 -0.0471 -0.3779 -8.0344 37 1 3.8125 0.6636 -0.9902 38 1 3.9771 2.1812 -0.0742 39 1 5.1286 0.3143 1.0820 40 1 3.6000 -0.5956 1.1354 41 1 4.0953 2.1284 2.4204 42 1 4.0148 0.5730 3.2825 43 1 1.8496 1.7742 3.4108 44 1 1.6852 0.2569 2.4951 45 1 2.0622 3.0338 1.2850 46 1 0.5335 2.1239 1.3385 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457997151.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:02 Heat of formation + Delta-G solvation = -107.382108 kcal Electronic energy + Delta-G solvation = -24306.820358 eV Core-core repulsion = 21002.611143 eV Total energy + Delta-G solvation = -3304.209215 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.64504 -38.05374 -36.36036 -35.97227 -33.24489 -31.22635 -30.70932 -30.21240 -26.55729 -25.80413 -25.72416 -25.10047 -23.07033 -22.62452 -20.27988 -19.49522 -18.80068 -17.51111 -16.41891 -15.86461 -15.60496 -15.12487 -14.94868 -14.77407 -14.34900 -13.90742 -13.70523 -13.56871 -12.95371 -12.82553 -12.76011 -12.58524 -12.30046 -12.17992 -12.06040 -11.46282 -11.34949 -11.20248 -11.14205 -10.88620 -10.74931 -10.68163 -10.65011 -10.47928 -10.39479 -10.20313 -9.82236 -9.64073 -9.43405 -8.99476 -8.76844 -8.45559 -8.31406 -6.02739 -4.12970 2.89749 3.26361 3.34999 3.39031 3.50978 3.83940 4.39220 4.59555 4.65059 4.79401 5.09420 5.14557 5.17572 5.23990 5.30323 5.40776 5.44532 5.49755 5.52696 5.68524 5.74653 5.87579 5.94301 6.00127 6.08913 6.12764 6.18650 6.21291 6.30196 6.36469 6.50172 6.75553 6.83833 6.89796 7.00546 7.00726 7.09073 7.34909 7.55314 7.68847 8.00277 8.04577 8.14777 8.37563 8.64506 8.87896 9.52963 10.98593 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.034566 B = 0.004020 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.852547 B = 6963.524644 C = 7018.960116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.366 6.366 3 C 0.106 3.894 4 C 0.484 3.516 5 O -0.548 6.548 6 N -0.707 5.707 7 C 0.130 3.870 8 C 0.056 3.944 9 C -0.130 4.130 10 C -0.130 4.130 11 C -0.506 4.506 12 H 0.057 0.943 13 C 0.066 3.934 14 N -0.885 5.885 15 Si 0.892 3.108 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.102 4.102 20 C -0.113 4.113 21 C -0.119 4.119 22 C -0.114 4.114 23 C -0.128 4.128 24 H 0.043 0.957 25 H 0.052 0.948 26 H 0.090 0.910 27 H 0.403 0.597 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.007 0.993 31 H 0.086 0.914 32 H 0.026 0.974 33 H 0.025 0.975 34 H 0.085 0.915 35 H 0.007 0.993 36 H 0.259 0.741 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.068 0.932 45 H 0.082 0.918 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.026 -2.206 16.455 17.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.284 6.284 3 C 0.063 3.937 4 C 0.268 3.732 5 O -0.427 6.427 6 N -0.358 5.358 7 C 0.007 3.993 8 C 0.055 3.945 9 C -0.188 4.188 10 C -0.188 4.188 11 C -0.544 4.544 12 H 0.076 0.924 13 C -0.135 4.135 14 N -0.524 5.524 15 Si 0.721 3.279 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.140 4.140 20 C -0.151 4.151 21 C -0.157 4.157 22 C -0.152 4.152 23 C -0.166 4.166 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.108 0.892 27 H 0.239 0.761 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.026 0.974 31 H 0.104 0.896 32 H 0.045 0.955 33 H 0.044 0.956 34 H 0.104 0.896 35 H 0.026 0.974 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.101 0.899 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.946 -1.672 16.349 17.162 hybrid contribution -0.609 0.293 -0.985 1.195 sum 4.337 -1.378 15.364 16.024 Atomic orbital electron populations 1.22920 0.80911 1.03216 1.00760 1.87943 1.19917 1.25751 1.94813 1.21772 0.95389 0.83572 0.92953 1.21163 0.78668 0.88225 0.85183 1.90665 1.52152 1.15212 1.84662 1.46391 1.61913 1.15614 1.11886 1.21751 0.96426 0.95594 0.85516 1.18354 0.93412 0.92098 0.90606 1.21821 0.96424 1.00081 1.00479 1.21823 0.97619 0.99711 0.99635 1.21018 1.40799 0.97033 0.95565 0.92448 1.24876 0.95298 0.94882 0.98436 1.69813 1.47832 1.09524 1.25193 0.86525 0.78865 0.80126 0.82422 1.19788 1.21052 1.21061 1.21507 0.90627 1.01893 0.99960 1.21448 1.00246 0.99837 0.93544 1.21548 0.95920 1.00563 0.97669 1.21467 0.95914 1.00764 0.97024 1.21875 1.01701 0.99878 0.93125 0.93859 0.92954 0.89199 0.76075 0.92881 0.92673 0.97450 0.89581 0.95489 0.95580 0.89589 0.97363 0.93060 0.90606 0.90134 0.91805 0.90801 0.92093 0.92022 0.91995 0.91347 0.89944 0.91433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.20 101.05 1.03 1.26 16 2 O -0.37 -4.91 8.45 -35.23 -0.30 -5.21 16 3 C 0.11 1.47 0.62 -91.77 -0.06 1.41 16 4 C 0.48 8.52 5.40 -10.98 -0.06 8.46 16 5 O -0.55 -11.43 16.08 5.56 0.09 -11.34 16 6 N -0.71 -12.90 3.98 -60.29 -0.24 -13.14 16 7 C 0.13 2.77 4.51 -4.04 -0.02 2.76 16 8 C 0.06 1.30 0.50 -155.67 -0.08 1.22 16 9 C -0.13 -2.97 8.08 37.15 0.30 -2.67 16 10 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 11 C -0.51 -13.25 8.01 -34.44 -0.28 -13.52 16 12 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 13 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 14 N -0.88 -23.55 9.35 55.43 0.52 -23.03 16 15 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 16 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 C -0.10 -1.25 4.93 -26.74 -0.13 -1.38 16 20 C -0.11 -1.13 5.78 -26.74 -0.15 -1.28 16 21 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 22 C -0.11 -1.14 5.78 -26.73 -0.15 -1.30 16 23 C -0.13 -1.60 3.94 -26.73 -0.11 -1.71 16 24 H 0.04 0.48 6.74 -51.93 -0.35 0.13 16 25 H 0.05 0.77 6.34 -51.93 -0.33 0.44 16 26 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.40 7.01 5.73 -40.82 -0.23 6.78 16 28 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.01 0.13 6.86 -51.93 -0.36 -0.22 16 31 H 0.09 2.16 6.07 -51.93 -0.32 1.85 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 2.14 6.07 -51.93 -0.32 1.83 16 35 H 0.01 0.15 6.86 -51.93 -0.36 -0.21 16 36 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 37 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.08 0.98 8.14 -51.92 -0.42 0.56 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.78 7.68 -51.92 -0.40 0.38 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.70 7.68 -51.92 -0.40 0.30 16 45 H 0.08 1.10 7.88 -51.92 -0.41 0.69 16 46 H 0.07 0.88 6.72 -51.93 -0.35 0.53 16 LS Contribution 345.87 15.07 5.21 5.21 Total: -1.00 -27.83 345.87 -7.40 -35.22 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -8.00 Total: 5.57 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: 0.35 Total: -8.97 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.28 Total: -36.17 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -0.21 Total: -16.55 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.83 -7.40 -35.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457997151.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.161 kcal (2) G-P(sol) polarization free energy of solvation -27.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds