Wall clock time and date at job start Tue Mar 31 2020 05:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47152 * 2 1 4 4 C 1.50703 * 109.47326 * 239.99789 * 2 1 3 5 5 H 1.07994 * 120.00210 * 239.99819 * 4 2 1 6 6 C 1.37875 * 119.99567 * 59.99862 * 4 2 1 7 7 N 1.31516 * 120.00494 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99895 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46937 * 90.00092 * 8 6 4 10 10 H 1.48499 * 109.47045 * 209.99871 * 8 6 4 11 11 H 1.48495 * 109.46904 * 330.00159 * 8 6 4 12 12 C 1.52998 * 109.47553 * 119.99906 * 2 1 3 13 13 N 1.46506 * 109.46996 * 300.00206 * 12 2 1 14 14 C 1.34775 * 120.00019 * 179.97438 * 13 12 2 15 15 O 1.21280 * 119.99930 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.99971 * 179.97438 * 14 13 12 17 17 O 1.42902 * 109.47205 * 180.02562 * 16 14 13 18 18 C 1.42898 * 114.00186 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.47319 * 180.02562 * 18 17 16 20 20 C 1.54267 * 110.03373 * 292.91285 * 19 18 17 21 21 C 1.54968 * 104.16137 * 217.13581 * 20 19 18 22 22 C 1.54884 * 102.77441 * 37.88396 * 21 20 19 23 23 C 1.53874 * 110.03593 * 175.69205 * 19 18 17 24 24 H 1.09006 * 109.46951 * 300.00048 * 1 2 3 25 25 H 1.09000 * 109.47144 * 59.99890 * 1 2 3 26 26 H 1.09000 * 109.47029 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47347 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47186 * 300.00085 * 3 2 1 29 29 H 1.08998 * 109.47401 * 59.99811 * 3 2 1 30 30 H 0.97001 * 120.00493 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.48057 * 179.97438 * 12 2 1 32 32 H 1.09000 * 109.47144 * 59.99836 * 12 2 1 33 33 H 0.96995 * 119.99976 * 359.97438 * 13 12 2 34 34 H 1.09001 * 109.47017 * 60.00358 * 16 14 13 35 35 H 1.08999 * 109.47472 * 300.00035 * 16 14 13 36 36 H 1.09002 * 109.47259 * 300.00293 * 18 17 16 37 37 H 1.09001 * 109.47074 * 60.00315 * 18 17 16 38 38 H 1.09004 * 110.01939 * 54.29674 * 19 18 17 39 39 H 1.09001 * 110.48609 * 335.77840 * 20 19 18 40 40 H 1.08999 * 110.49311 * 98.42344 * 20 19 18 41 41 H 1.08997 * 110.72048 * 279.57487 * 21 20 19 42 42 H 1.08993 * 110.92252 * 156.29196 * 21 20 19 43 43 H 1.09009 * 110.48779 * 203.40596 * 22 21 20 44 44 H 1.09001 * 110.59973 * 80.82109 * 22 21 20 45 45 H 1.09003 * 110.03243 * 238.56963 * 23 19 18 46 46 H 1.09004 * 110.03196 * 359.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.3427 -2.1617 -4.4118 10 1 2.4865 -0.1414 -5.1122 11 1 3.6292 -1.7583 -3.7122 12 6 2.0401 -0.7212 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 1.8769 -0.4913 3.6695 15 8 2.5743 -1.4773 3.7808 16 6 1.3751 0.2195 4.8999 17 8 1.8514 -0.4542 6.0667 18 6 1.4307 0.1428 7.2950 19 6 1.9964 -0.6564 8.4706 20 6 1.3516 -2.0571 8.5165 21 6 1.1886 -2.3501 10.0295 22 6 0.7922 -0.9679 10.6052 23 6 1.6414 0.0358 9.7982 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 0.7088 1.1613 -3.4844 31 1 3.1300 -0.7216 1.2491 32 1 1.6767 -1.7489 1.2493 33 1 0.9943 0.7582 2.3564 34 1 0.2851 0.2202 4.8999 35 1 1.7391 1.2469 4.9000 36 1 1.7958 1.1686 7.3443 37 1 0.3418 0.1419 7.3452 38 1 3.0784 -0.7466 8.3742 39 1 0.3795 -2.0459 8.0234 40 1 2.0071 -2.7943 8.0529 41 1 2.1298 -2.6921 10.4597 42 1 0.3987 -3.0811 10.2015 43 1 1.0395 -0.9110 11.6653 44 1 -0.2702 -0.7788 10.4516 45 1 2.5511 0.2809 10.3464 46 1 1.0664 0.9415 9.6049 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458038978.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:39 Heat of formation + Delta-G solvation = -110.872051 kcal Electronic energy + Delta-G solvation = -22388.173269 eV Core-core repulsion = 19083.812719 eV Total energy + Delta-G solvation = -3304.360550 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.50272 -38.73969 -37.03366 -36.14888 -33.27692 -31.09839 -30.62417 -28.92846 -27.91713 -25.73961 -25.48832 -24.71892 -24.09187 -20.91773 -20.36684 -19.77831 -18.80909 -17.22539 -16.74342 -16.30280 -15.86675 -15.64865 -15.29016 -14.71892 -14.64534 -14.47917 -13.76974 -13.56942 -13.26044 -12.95685 -12.80035 -12.30087 -12.19303 -11.90320 -11.50904 -11.37654 -11.37218 -11.23230 -11.19963 -10.95199 -10.86822 -10.82122 -10.69871 -10.63118 -10.39493 -10.20652 -9.72685 -9.64576 -9.51235 -9.21273 -8.79550 -8.46079 -8.31724 -6.02810 -4.12780 3.03506 3.10829 3.28305 3.35281 3.39826 4.10827 4.37289 4.38431 4.40574 4.60899 4.96964 5.00260 5.15611 5.19856 5.21619 5.22645 5.24011 5.26574 5.37992 5.41991 5.50049 5.55582 5.64510 5.78075 5.85969 6.04297 6.10562 6.20460 6.22590 6.32572 6.49510 6.77352 6.80769 6.89824 6.99340 7.00874 7.07877 7.34742 7.54458 7.68843 7.99948 8.03769 8.14915 8.37860 8.70721 8.88088 9.53084 10.98626 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.047750 B = 0.002540 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.251583 B =11021.494278 C =11253.765395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.055 3.945 3 C -0.131 4.131 4 C -0.505 4.505 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.134 3.866 13 N -0.716 5.716 14 C 0.504 3.496 15 O -0.532 6.532 16 C 0.044 3.956 17 O -0.360 6.360 18 C 0.066 3.934 19 C -0.091 4.091 20 C -0.114 4.114 21 C -0.128 4.128 22 C -0.125 4.125 23 C -0.118 4.118 24 H 0.006 0.994 25 H 0.086 0.914 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.086 0.914 29 H 0.006 0.994 30 H 0.260 0.740 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.398 0.602 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.048 0.952 37 H 0.050 0.950 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.658 1.977 21.684 21.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.012 3.988 13 N -0.369 5.369 14 C 0.288 3.712 15 O -0.409 6.409 16 C -0.036 4.036 17 O -0.278 6.278 18 C -0.011 4.011 19 C -0.110 4.110 20 C -0.152 4.152 21 C -0.165 4.165 22 C -0.162 4.162 23 C -0.156 4.156 24 H 0.025 0.975 25 H 0.104 0.896 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.104 0.896 29 H 0.025 0.975 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.233 0.767 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.101 1.208 21.595 21.731 hybrid contribution -0.165 0.285 -0.951 1.006 sum -2.266 1.493 20.645 20.822 Atomic orbital electron populations 1.21837 0.97752 0.99220 1.00081 1.18365 0.92814 0.92787 0.90552 1.21835 0.98642 0.98332 1.00083 1.20987 1.31452 1.12087 0.89863 0.92405 1.24883 0.94883 0.94917 0.98868 1.69801 1.36754 1.22732 1.23226 0.86563 0.79343 0.79379 0.82548 1.20707 1.21272 1.19892 1.21727 0.98201 0.95796 0.83122 1.46213 1.53047 1.31991 1.05670 1.20147 0.81408 0.85181 0.84418 1.90694 1.37446 1.26041 1.86674 1.22244 0.99221 0.96267 0.85915 1.88024 1.74306 1.53212 1.12254 1.22723 0.98153 0.96024 0.84160 1.21753 1.01311 0.95365 0.92544 1.22376 1.01045 0.96087 0.95661 1.22547 1.01237 0.96806 0.95949 1.22359 0.99728 0.95049 0.99101 1.22136 1.00087 0.98404 0.94928 0.97505 0.89565 0.95403 0.95393 0.89568 0.97497 0.93009 0.92655 0.92664 0.76750 0.90670 0.90666 0.93369 0.93220 0.90052 0.91497 0.91119 0.91578 0.91657 0.91790 0.91671 0.91439 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 2 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 3 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 4 C -0.51 -13.24 8.01 -34.44 -0.28 -13.51 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -23.52 9.35 55.43 0.52 -23.01 16 8 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 12 C 0.13 2.86 4.50 -4.04 -0.02 2.85 16 13 N -0.72 -12.74 4.96 -60.29 -0.30 -13.04 16 14 C 0.50 9.04 7.91 -10.99 -0.09 8.95 16 15 O -0.53 -11.93 16.50 -14.35 -0.24 -12.16 16 16 C 0.04 0.58 6.42 36.00 0.23 0.81 16 17 O -0.36 -5.21 9.71 -55.14 -0.54 -5.75 16 18 C 0.07 0.68 4.98 37.16 0.19 0.87 16 19 C -0.09 -0.87 3.19 -89.50 -0.29 -1.16 16 20 C -0.11 -1.13 6.22 -25.03 -0.16 -1.29 16 21 C -0.13 -1.00 6.91 -24.70 -0.17 -1.18 16 22 C -0.12 -0.87 6.83 -25.08 -0.17 -1.04 16 23 C -0.12 -0.87 6.46 -25.61 -0.17 -1.03 16 24 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 25 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 29 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 30 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.40 6.18 6.16 -40.82 -0.25 5.93 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.05 0.45 8.02 -51.93 -0.42 0.04 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.69 7.77 -51.93 -0.40 0.28 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.43 7.67 -51.93 -0.40 0.03 16 LS Contribution 360.14 15.07 5.43 5.43 Total: -1.00 -29.74 360.14 -8.90 -38.64 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -8.27 Total: 2.32 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -0.48 Total: -8.16 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.22 Total: -36.04 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.77 Total: -17.91 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.74 -8.90 -38.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458038978.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.228 kcal (2) G-P(sol) polarization free energy of solvation -29.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds